NEXUS
[File created by TreeBASE:  7/26/07  21:02:04]
[Matrix accession#: M1410]

BEGIN TAXA;
	TITLE M1410;
	DIMENSIONS  NTAX=18;
	TAXLABELS
		Ceratocystis_virescens	Ceratocystis_resinifera	Ceratocystis_pirilliformis_AF427106	Ceratocystis_pirilliformis_AF427105	Ceratocystis_pirilliformis_AF427104	Ceratocystis_paradoxa	Ceratocystis_moniliformis	Ceratocystis_laricicola	Ceratocystis_fimbriata_AF453438	Ceratocystis_fimbriata_AF395696	Ceratocystis_fimbriata_AF395693	Ceratocystis_fimbriata_AF395679	Ceratocystis_fimbriata_AF264904	Ceratocystis_eucalypti	Ceratocystis_douglasii	Ceratocystis_coerulescens	Ceratocystis_albofundus_AF264910	Ceratocystis_albofundus_AF043605
	;
END;

BEGIN CHARACTERS;
	TITLE M1410;
	DIMENSIONS NCHAR=573;
	FORMAT DATATYPE = DNA MISSING = N GAP = -  ;
	MATRIX
		Ceratocystis_virescens                    TTCGCGAGACCTCG-CTT-GCGG------------------------CATGAT-GGGAATCAA---------------TGGA-AG----------CCTCTCCAGT-GATTAAGCA------------------------------GCGGGGC---------CCCTGTGGGGGGGGCGG-----TGCCCACCGG---CGG--TCGGATGACAGA--ATCGG-CCTCGCC-GCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTTATGG-----------AAGAGGAACAACTTGAGGAGGG--------------GTCCTCAATTCTTACCCGATCGTAATGAGGCG----CTGGAT-CATGGTTTGAGAGCAGCC-----------------GCGTG-CGGG----CTCTGGGACCCT
		Ceratocystis_resinifera                   TTCGCGAGACCTCG-CTT-GGTG------------------------CATGAT-GGGAATCAA---------------TGGA-AG----------CCCCTCCAGT-GATTAAGCA------------------------------TCGGG-CC--------CCCTGTGGG---CGCGGG----TGCACACCGG---CGG--TCGGATGACAGA--ATCGG-CCTCGCC-GCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTGATGG-----------AAGAGGAACAACTTTATCGTGG-----------------ATAAATTCTTACCCGATCGTAATGAGGCG----CGGGAT-CATGGTTTGAGAGCAGCC-----------------GCGGG-CGGG----CTATGGGACCCT
		Ceratocystis_pirilliformis_AF427106       TTCGGGAGACCTAGGCTT-GCGTGGAGCTGACACGACCGCCCTCCGCGATGAT-GGGAAGC-AGGAAAAAAAAA-CACATG--TTATTGGAGAGACCAGGGGGGG-----TGGG-GTTCTGCTTCATCAGCGCCCCAGCAGGGGTGTGGG-CTTCTGCCCCCCCTGTGGG--CCGCGGGGG-C-GCACCC-GGGA-CGGG-TCGGATGACAGACCATCG-CCC-CGCC-GCCC----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCTGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCACCTGCGGGGG--------TGGAAGAGGAACAAGTTGAGG-TGG-------------TGACATCAATTATTACCCGAGCGTAATGAGGCC----CTGGATTCCTGTTTTGAGAGCAGCGCCCAACCGCCGGGGGGGGGGTTCCGGGGGG-CTCGGGGACCAG
		Ceratocystis_pirilliformis_AF427105       TTCGGGAGACCTAGGCTT-GCGTGGAGCTGACACGACCGCCCTCCGCGATGAT-GGGAAGC-AGGAAAAAAAAA-CACATG--TTATTGGAGAGACCAGGGGGGG-----TGGG-GTTCTGCTTCATCAGCGCCCCAGCAGGGGTGTGGG-CTTCTGCCCCCCCTGTGGG--CCGCGGGGG-C-GCACCC-GGGA-CGGG-TCGGATGACAGACCATCG-CCC-CGCC-GCCC----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCTGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCACCTGCGGGGG--------TGGAAGAGGAACAAGTTGAGG-TGG-------------TGACATCAATTATTACCCGAGCGTAATGAGGCC----CTGGATTCCTGTTTTGAGAGCAGCGCCCAACCGCCGGGGGGGGGGTTCCGGGGGG-CTCGGGGACCAG
		Ceratocystis_pirilliformis_AF427104       TTCGGGAGACCTAGGCTT-GCGTGGAGCTGACACGACCGCCCTCCGCGATGAT-GGGAAGC-AGGAAAAAAAAAACACATG--TTATTGGAGAGACCAGGGGGGG-----TGGG-GTTCTGCTTCATCAGCGCCCCAGCAGGGGTGTGGG-CTTCTGCC-CCCCTGTGGG--CCGCGGGGG-C-GCACCC-GGGA-CGGG-TCGGATGACAGACCATCG-CCC-CGCC-GCCC----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCTGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCACCTGCGGGGGG-------TGGAAGAGGAACAAGTTGAGG-TGG-------------TGACATCAATTATTACCCGAGCGTAATGAGGCC----CTGGATTCCTGTTTTGAGAGCAGCGCCCAACCGCCGGGGGGGGGGTTCCGGGGGG-CTCGGGGACCAG
		Ceratocystis_paradoxa                     TTCGGGAGACCTGG-CTT-GGTG------------------------AATGAT-GGGAATCAAG-------------TTGGTAAACGGGATTAAGCATCTCCC-T--------------------------------------------------------CCCTGTGGG---CGCGGG----TGCACACCGG---CGG--TCGGATGACAGA--ATCGG-CCT-GCCCGCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCTGTCAGACCGTCGTACCGTGGGACCTATCTCGGATCTTGAATCATCGGTGATTCAAGCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTGATGG-----------AATAGGAACAACTTTAT--AGGG----------------ATAAATTATTACCCGACCGTAATGAGGCG----CTGGAT-CATGGTTTGATAGCAGCC-----------------GGGGAGAGG-----CTATGGGACCCT
		Ceratocystis_moniliformis                 TTCGGGAGACC-GGG-TTC-------------------TCCCTCGTACCTGATACGGAATAAAG----------------TG----------------------------------TTTTATTTAATCAGC-------------TGTGGA------------CCTGTAGGGGGCGCG--------CCCACCGGG--CGG--TCGGATGACAG--CATCGGG----GC--GCCCG---AGCGGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTTCATCAGCTGTGATGAAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTGATGG------AGG-----AGGAACACATTGAGA-TGCG--------------ATATAAATTGTGACCCGATCGTAATGAGAGG----CTCGAT-CAGGGTTTGAGAGCAGCCCCT--------------GGG---CGGAGG--ATCTGGGACCCT
		Ceratocystis_laricicola                   TTCGCGAGACCTCG-CTT-GGGGGG----------------------CATGAT-GGGAATCAAG--------------TGGA-AG----------CCCCTCCAGTTGATTAAGCA------------------------------GCGGG-CA------CCCCCTGTGGG--CCGCGGG----TGCACACCGGGCGCGG--TCGGATGACAGA--ATCGG-CCTCGCC-GCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCA-TCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTGATGG-----------AAGAGGAACAACTTTATCGTGG-----------------ATAAATTATTACCCGATCGTAATGAGGAC----CGGGAT-CATGGTTTGAGAGCAGCC-----------------GCGGG-CGGGGGGGCTATGGGACCCT
		Ceratocystis_fimbriata_AF453438           TTCGAGAGACCTAG-CTTTGCGTGGAGCAGACACGACCG---------ATGAG-GGGAAG-AAG----CAAATTTGG---TG------------ACCACAC--AAATC--------TTATGATTCATCAGCGGC----------AGTGGT-ATTCTGAG--CCCTGTGGGGGCGGCGGGG---TGCAC-GGGGG-------TCGGATGACAGA--ATCG--CCT-GC--GCCCCCCCA--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCAC-TGTGGGG------AGGTGGAATAGGAACAAGTTGAGG-TG-----------TTTTGACCTCAATTATTACCCGAGCGTAATGAGGCG----CTGGATTCCTGTTTTGAGAGCAGCGCCCC-------------GGGTGCCGGGGG--CTCTGGGACCAG
		Ceratocystis_fimbriata_AF395696           TTCGAGAGACCTCG-CTTTG-GTGGTGC-GCCACTACCT---------ATGAT-GGGAAG-AAGGGGACATTTTAGGGT-TGAGGCCCCCA-A-ACCACCAAAAAATCCCTG--TGCCATGATTAATCATCG-C----------AGTGG--CTTCTGC---CCCTGTGGGG-CGGGGGGGGGCTGCACCC-GGGA-CGGG-TCGGATGACAGA--ATCG-CCCT-GC--GCCCCC--A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCACCCGCTGGGGGCGGGGGGTGGAAGAGGAACAAGTTGAGG-TGGGC-----------TGACATCAATTATTACCCGAGCGTAATGAGGCG----CTGGATTCCTGTTTTGAGAGCAGCTGCCCC--------------GGGCGGGGGG-TCTCTGGGACCAG
		Ceratocystis_fimbriata_AF395693           TTCGAGAGACCTCG-CTTTCGGTGGTGCCGCCACGACCC---------ATGAT-GGGAAG-AAGGGG-CAAAAACCTTCGTTGCGCCCC--GA-ACAAC-----------TGGGTGCCATGCTTCCTCAGCG-C----------AGTGG--CTGCTGC--CCGGTG-GGG--CGGGGGGGGGCTGCACCC-GGGA-CGGG-TCGGATGACAGA--ATCG--CCT-GC--GCCCCC--A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCAC--GCCTGGGGG------TGGAAGAGGAACAAGTTGAGG-TGAGGGGGGGGGGCGCTGACCTCAATTATTACCCGAGCGTAATGAGGCG----CTGGATTCCTGTTTTGAGAGCAGCGGCCCC--------------GGGCGGGGGG-TCTCTGGGACCAG
		Ceratocystis_fimbriata_AF395679           TTCGAGAGACCTAG-CTT-GCGTGGAGCAGACACGACCG---------ATGAG-GGGAAG-AAG----CAAATTTGG---TG------------ACC------AAATC--------TTATGATTCATCAGCG-C----------AGTGT--ATTCTGAG--CCCTGTGG---C-GCGGGGG--TTCACGGGGGG-------TCGGATGACAGA--ATCG--CCT-GC--GCCCCCC-A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCAACTGTTGGG------AGGTGGAATAGGAACAAGTTGAGG-TG-----------TTTTGACCTCAATTATTACCCGAGCGTAATGAGGCG----CTGGATTCCTGTTTTGAGAGCAGCGCCCC-------------GGGTGCCGGGGG--CTCTGGGACCAG
		Ceratocystis_fimbriata_AF264904           TTCGAGAGACCTAG-CTT-GCGTGGAGCAGACACGACCG---------ATGAG-GGGAAG-AAG----CAAATTTGG---TG------------ACCAAAC--AAATC--------TTATGATTCATCAGCGGC----------AGTGT--CTTCTGCG--CCCTGTGGGG-CGGCGGGG---TGCAC-GGGGG-------TCGGATGACAGA--ATCG--CCT-GC--GCCCCCCCA--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCAC-GGCGGTGGG-------TGGAATAGGAACAAGTTGAGG-TG-----------TTTTGACCTCAATTATTACCCGATCGTAATGAGGCG----CTGGATTCCTGTTTTGAGAGCAGCGCCCC-------------GGGTGCCGGGGG--CTCTGGGACCAG
		Ceratocystis_eucalypti                    TTCGCGAGACCTCG-CTT-GGTG------------------------CATGAT-GGGAATCAA---------------TGGA-AG----------CCTCTCCAGTGGATTAAGCA------------------------------GCGGG-CT--------CCCTGTGGGGG---CGGG----TGCACACCGG---CGG--TCGGATGACAGA--ATCGG-CCTCGCC-GCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTTATGG-----------AAGAGGAACAACTGTATCGTGGC------------GACGATAAATTATTACCCGATCGTAATGAGGCG----CTGGAT-CATGGTTTGAGAGCAGCC-----------------GCGGG-CGGG----CTATGGGACCCT
		Ceratocystis_douglasii                    TTCGCGAGACCTCG-CTTTGGGG------------------------CATGAT-GGGAATCAA---------------TGGA-AG---------CCCCCTCCAGT-GATTAAGCA------------------------------GCGCG-CC------CCCCCTGTGGG--CCGCGGG----TGCTCACCGGG--CGGG-TCGGATGACAGA--ATCGCCCCTCGCC-GCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTGATGG-----------AAGAGGAACAACTTTATCGTGG-----------------ATAAATTATTACCCGATCGTAATGAGGCG----CGGGAT-CATGGTTTGAGAGCAGCC-----------------GCGGG-CGGGG---CTATGGGACCCT
		Ceratocystis_coerulescens                 TTCGCGAGACCTCG--TT-GGGGG-----------------------CATGAT-GGGAATCAA---------------TGGA-AG--GGA--CCCCCCCTCCAGT-GATTAATCA------------------------------GCGCG-CC-----CCCCTCTGTGGG--CCGCGGG----TGCACACCGGG--CGGGGTCGGATGACAGA--ATCGG-CCTCGCC-GCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGAATTTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTGATGG-----------AAGAGGAACAACTTTATAGTGGGGGGAGGG---------ATAAATTATTACCCGATCGTAATGAGGCG----CGGGAT-CATGGTTTGAGAGCAGCC-----------------GC-GGGCGGGG---CTATGGGACCCT
		Ceratocystis_albofundus_AF264910          ATGATTGGAAGAAA-----GAGTG-AGCAGAAGAG---GCCT-------TGTGGGGGCGCCAAAAATCATTTC------TGC-TTAT----------------------------GC-ATTCTTCATCATCGCTCCA--------GTGGGGCTTCTGCG--CCCT-TGGTGAGCGCGGGGGG---CCCCGGGGGCCC----CCGGATGACAGA--ATCG--CCT-GC--GCCCCCCCA--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATTTTGAAGCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCAC-TG-GATGGG----CAGGGGAAGAGGAACAAGTTGAGG-TGGC-------TTTGGTGACCTCAATTATTACCCGATCGTAATGAGGCGGGGGCTGGATTCCTGTTTTGAGAGCAGCTCCAC----------GGGGGG-CCCGGGGG--CTATGGGAACAG
		Ceratocystis_albofundus_AF043605          ATGATTGGAAGAAA-----GAGTG-AGCAGAAGAG---GCCT-------TGTGGGGGC-CCAAAAATCATTTC------TGC-TTAT----------------------------GC-ATTCTTCATCATCGCTCCA--------GTGGGGCTTCTGCG--CCCT-TGGTGAGCGCGGGGGG---CCCCGGGGGCCC----CCGGATGACAGA--ATCG--CCT-GC--GCCCCCCCA--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCAC-TG-GATGGG----CAGGGGAAGAGGAACAAGTTGAGG-TGGC-------TTTGGTTACCTCAATTATTACCCGATCGTAATGAGGCGGGGGCTGGATTCCTGTTTTGAGAGCAGCTCCAC----------GGGGGG-CCCGGGGG--CTATGGGAACAG
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 573 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS gapmode = newstate ; 
 EXSET * Excluded = 64 - 145 ; 
 END;