#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 13:42 GMT

TreeBASE (cc) 1994-2008

Study reference:
Oh S., & Potter D. 2003. Phylogenetic utility of the second intron of <i>LEAFY</i>
in <i>Neillia</i> and <i>Stephanandra</i> (Rosaceae) and implications for the
origin of <i>Stephanandra</i>. Molecular Phylogenetics and Evolution, 29: 203-215.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1071]

BEGIN TAXA;
        TITLE  TaxonLabelSet11310;
        DIMENSIONS NTAX=13;
        TAXLABELS
            Neillia_affinis_144
            Neillia_gracilis_255
            Neillia_sinensis_140
            Neillia_sinensis_149
            Neillia_thibetica_145
            Neillia_thibetica_169
            Neillia_thyrsiflora_170
            Neillia_thyrsiflora_254
            Neillia_thyrsiflora_258
            Neillia_uekii_152
            Neillia_uekii_168
            Physocarpus_amurensis_265
            Physocarpus_capitatus_082
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M705]

	TITLE 'Neillia_ITSsm';
	LINK TAXA = TaxonLabelSet11310;
	DIMENSIONS NCHAR=608;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                     10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620      ]
[                                      .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .      ]
Neillia_affinis_144           TCGATACCTGCCTAGCAGAACGACCCGAGAACGCGTTATGA-ACTCGGGGGAGGAGGGGCCTCGCGCCTCTCGTCCCCT--TTGTCCCGGCGGGCGA---CCGTC--GGGCGAACAAACGAACACCGGCGCGAATTGCGCCAAGGAACCTTAACGAAAGAGCGCGCTCCCTCCGCCCCGGAAACGGTGCCTGCGGGGGGCGGCGTCGCGATCTTCAAATATGTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCACTAGGCCGAGGGCACGCCTGCCTGGGCGTCACACGTCGTTGCCCCCCC-TCCGCAACTCCCTCGGGAATGCGGGGCGGGGCGGAAGATGGCCTCCCGTGCGCTCCGCCGCGCGGTTGGCGTAAATACCAAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTGTCAAA---CCTCGGTGGCATGTCGTGCGCGCGCGCCGCGACTCGAGGGCTCTTCGGACCCAACGCTTCGCTTCGGCGACGCTTTCAAC
Neillia_gracilis_255          TCGATACCTGCCTAGCAGAACGACCCGAGAACGCGTTATGA-ACTCGGGGGGGGAGGGGCCTCGCGCCTCTCGTCCCCT--TTGTCCCGGCGGGCGA---CCGTC--GGGCGAACAAACGAACACCGGCGCGAATTGCGCCAAGGAACCTTAACGAAAGAGCGCGCTCCCTCCGCCCCGGAAACGGTGCCTGCGGGGGGCGGCGTCGCGATCTTCAAATATGTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCACTAGGCCGAGGGCACGCCTGCCTGGGCGTCACACGTCGTTGCCCCCCCATCCGCAACTCCCTCGGGAATGCGGGGCGGGGCGGAAGATGGCCTCCCGTGCGCCCCGCCGCGCGGTTGGCGTAAAT{AG}CCAAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTGTCAAA---CCTCGGTGGCCTGTCGTGTGCGCGCGTCGCGACTCGAGGGCTCGTCGGACCCAACGCTTCGCTTCGGCGACGCTTTCAAC
Neillia_sinensis_140          TCGATACCTGCCTAGCAGAACGACCCGAGAACGCGTTATGA-ACTCGGGGGAGGA{GT}GGGCC{AT}CGCGCCCTTCGTCCCCT--TTGTCCCGGCGGGCGA---CCGTC--GGGCGAACAAACGAACACCGGCGCGAATTGCGCCAAGGAACCTTAACGAAAGAGCGCGCTCCCTCCGCCCCGGAAACGGTGCCTGCGGGGGGCGGCGTCGCGATCTTCAAATATGTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCACTAGGCCGAGGGCACGCCTGCCTGGGCGTCACACGTCGTTGCCCCCC--TCCGCACCTCCCTCGGGAATGCGGGGCGGGGCGGAAGATGGCCTCCCGTGCGCTTCGCCGCGCGGTTGGCGTAAATACCAAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTGTCAAA---CCTCGGTGGCATGTCGTGCGCGCGCGCCGCGACTCG{AG}GGGCTCTTCGGACCCAACGCTTCGCTTCGGCGACGCTTTCAAC
Neillia_sinensis_149          TCGATACCTGCCTAGCAGAACGACCCGAGAACGCGTTATGA-ACTCGGGGGAGGAGGGGCCTCGCGCCCCTCGTCCCCT--TTGTCCCGGCGGGCGA---CCGTC--GGGCGAACAA{AC}CGAACACCGGCGCGAATTGCGCCAAGGAACCTTAACGAAAGAGCGCGCTCCCTCCGCCCCGGAAACGGTGCCTGCGGGGGGCGGCGTCGCGATCTTCAAATATGTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCACTAGGCCGAGGGCACGCCTGCCTGGGCGTCACACGTCGTTGCCCCCC--TCCGCA{AC}CTCCCTCGGGAATGCGGGGCGGGGCGGAAGATGGCCTCCCGTGCGCTTCGCCGCGCGGTTGGCGTAAATACCAAGTCCTCGGCGACGGGCGCCACGACGATCGGTGGTTGTCAAA---CCTCGGTGGCATGTCGTGCGCGCGCGCCGCGACTCGAGGGCTCTTCGGACCCAACGCTTCGCTTCGGCGACGCTTTCAAC
Neillia_thibetica_145         TCGATACCTGCCTAGCAGAACGACCCGAGAACGCGTTATGA-ACTCGGGGGAGGAGGGGCCTCGCGCCTCTCGTCCCCT--TTGTCCCGGCGGGCGA---CCGTC--GGGCGAACAAACGAACACCGGCGCGAATTGCGCCAAGGAACCTTAACGAAAGAGCGCGCTCCCTCCGCCCCGGAAACGGTGCCTGCGGGGGGCGGCGTCGCGATCTTCGAATATGTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCACTAGGCCGAGGGCACGCCTGCCTGGGCGTCACACGTCGTTGCCCCCCC-TCCGCAACTCCCTCGGGAATGCGGGGCGGGGCGGAAGATGGCCTCCCGTGCGCTCCGCCGCGCGGTTGGCGTAAAT{AG}CCAAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTGTCAAA---CCTCGGTGGCATGTCGTGCGCGCGCGCCGCGAC{CT}CGAGGGCTCTTCGGACCCAACGCTTCGCTTCGGCGACGCTTTCAAC
Neillia_thibetica_169         TCGATACCTGCCTAGCAGAACGACCCGAGAACGCGTTATGA-ACTCGGGGGAGGAGGGGCCTCGCGCCTCTCGTCCCCT--TTGTCCCGGCGGGCGA---CCGTC--GGGCGAACAAACGAACACCGGCGCGAATTGCGCCAAGGAACCTTAACGAAAGAGCGCGCTCCCTCCGCCCCGGAAACGGTGCCTGCGGGGGGCGGCGTCGCGATCTTCGAATATGTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCACTAGGCCGAGGGCACGCCTGCCTGGGCGTCACACGTCGTTGCCCCCCC-TCCGCAACTCCCTCGGGAATGCGGGGCGGGGCGGAAGATGGCCTCCCGTGCGCTCCGCCGCGCGGTTGGCGTAAAT{AG}CCAAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTGTCAAA---CCTCGGTGGCATGTCGTGCGCGCGCGCCGCGAC{CT}CGAGGGCTCTTCGGACCCAACGCTTCGCTTCGGCGACGCTTTCAAC
Neillia_thyrsiflora_170       TCGATACCTGCCTAGCAGAACGACCCGAGAACGCGTTATGA-GCTCGGGGGAGGAGGGGCCTCGCGCCTCTCGTCCCCT--TTGTCCCGGCGGGCGA---CCGTC--GGGCGAACAACCGAACACCGGCGCGAATTGCGCCAAGGAACCTTAACGAAAGAGCGCGCTCCCTCCGCCCCGGAAACGGTGCCTGCGGGGGGCGGCGTCGCGATCTTCAAATATGTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCACTAGGCCGAGGGCACGCCTGCCTGGGCGTCACACGTCGTTGCCCCCCC-TCCGCAGCTCCCTCGGGAATGCGGGGCGGGGCGGAAGATGGCCTCCCGTGCGCTCCGCCGCGCGGTTGGCCTAAATGCCAAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTGTCAAA---CCTCGGTGGCCTGTCGTGTGCGCGCGTCGCGACTCGAGGGCTCGTCGGACCCAACGCTTCGCTTCGGCGACGCTTTAAAC
Neillia_thyrsiflora_254       TCGATACCTGCCTAGCAGAACGACCCGAGAACGCGTTATGA-ACTCGGGGGAGGAGGGGCCTCGCGCCTCTCGTCCCCT--TTGTCCCGGCGGGCGA---CCGTC--GGGCGAACAACCGAACACCGGCGCGAATTGCGCCAAGGAACCTTAACGAAAGAGCGCGCTCCCTCCGCCCCGGAAACGGTGCCTGCGGGGGGCGGCGTCGCGATCTTCAAATATGTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCACTAGGCCGAGGGCACGCCTGCCTGGGCGTCACACGTCGTTGCCCCCC{AC}-TCCGCA{CG}CTCCCTCGGGAATGCGGGGCGGGGCGGAAGATGGCCTCCCGTGCGC{CT}CCGCCGCGCGGTTGGCGTAAAT{AG}CCAAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTGTCAAA---CCTC{GT}GTGGCCTGCCGTG{CT}GCGCGCGTCGCGACTCGAGGGCTCGTCGGACCCAACGCTTCGCTTCGGCGACGCTTTCAAC
Neillia_thyrsiflora_258       TCGATACCTGCCTAGCAGAACGACCCGAGAACGCGTTATGA-ACTCGGGGGAGGAGGGGCCTCGCGCCTCTCGTCCCCT--TTGTCCCGGCGGGCGA---CCGTC--GGGCGAACAACCGAACACCGGCGCGAATTGCGCCAAGGAACCTTAACGAAAGAGCGCGCTCCCTCCGCCCCGGAAACGGTGCCTGCGGGGGGCGGCGTCGCGATCTTCAAATATGTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCACTAGGCCGAGGGCACGCCTGCCTGGGCGTCACACGTCGTTGCCCCCCC-TCCGCAGCTCCCTCGGGAATGCGGGGCGGGGCGGAAGATGGCCTCCCGTGCGCTCCGCCG{CT}GCGGTTGGCCTAAATGCCAAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTGTCAAA---CCTCGGTGGCCTGTCGTGTGCGCGCGTCGCGACTCGAGGGCTCGTCGGACCCAACGCTTCGCTTCGGCGACGCTTTAAAC
Neillia_uekii_152             TCGATACCTGCCTAGCAGAACGACCCGAGAACGCGTTATGA-ACTCGGGGGGGGAGGGGCCTCGCGCCCCTCGTCCCCT--TTGTCCCGGCGGGCGA---CCGTC-GGGGCGAACAAACGAACACCGGCGCGAATTGCGCCAAGGAACCTTAACGAAAGAGCGCGCTCCCTCCGCCCCGGAAACGGTGCCTGCGGGGGGCGGCGTCGCGATCTTCAAATATGTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCACTAGGCCGAGGGCACGCCTGCCTGGGCGTCACACGTCGTTGCCCCCC--TCCGCAACTCCCTCGGGAATGCGGGGCGGGGCGGAAGATGGCCTCCCGTGCGCTTCGCCGCGCGGTTGGCGTAAATACCAAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTGTCAAA---CCTCGGTGGCATGTCGTGCGCGCGCGCCGCGACTCGAGGGCTCTTCGGACCCAACGCTTCGCTTCGGCGACGCTTTCAAC
Neillia_uekii_168             TCGATACCTGCCTAGCAGAACGACCCGAGAACGCGTTATGA-ACTCGGGGGGGGAGGGGCCTCGCGCCCCTCGTCCCCT--TTGTCCCGGCGGGCGA---CCGTC-GGGGCGAACAAACGAACACCGGCGCGAATTGCGCCAAGGAACCTTAACGAAAGAGCGCGCTCCCTCCGCCCCGGAAACGGTGCCTGCGGGGGGCGGCGTCGCGATCTTCAAATATGTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCACTAGGCCGAGGGCACGCCTGCCTGGGCGTCACACGTCGTTGCCCCCC--TCCGCAACTCCCTCGGGAATGCGGGGCGGGGCGGAAGATGGCCTCCCGTGCGCTTCGCCGCGCGGTTGGCGTAAATACCAAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTGTCAAA---CCTCGGTGGCATGTCGTGCGCGCGCGCCGCGACTCGAGGGCTCTTCGGACCCAACGCTTCGCTTCGGCGACGCTTTCAAC
Physocarpus_amurensis_265     TCGATGCCTGCCTAGCAGAACGACCCGAGAACAAGTTTTGACGCTCGGGGGAGGGGGGGTCTCGCGCCTCCCGTCCCCTTTTTGTCCCGGAGGGCGAAAGCCCTCCCGGGCGATCAAACGAACACCGGCGCGAACTGCGCCAAGGAACCTTAACGAAAGAGCGCGCTCCCTCCGCCCCGGAAACGGTGCTCGCGGGGGGCGGCGTCGCGATCTTCAAATATGTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCACTAGGCCGAGGGCACGCCTGCCTGGGCGTCACACGTCGTTGCCCCC---TCCGCAGTTCCCTCGGGAACGCGGG-CGGGGCGGAAGGTGGCCTCCCGTGCGCCCCGCCGCGCGGTTGGCATAAATACCAAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGCTTTCAAAACCCCCCCGTTGCGTGCCGTGCGCGCCCGTCGCGACTCGAGGGCTCGCTTGCCCCTCTGCTTCGCTCCGGCGACGCTCTCAAC
Physocarpus_capitatus_082     TCGATGCCTGCCTAGCAGAACGACCCGAGAACAAGTTTTAACGCTCGGGGGAGG-GGGGTCTCGCGCCTCCCGTCCCCTTTTTGTCCCGGAGGGCGAAAGCCCTCCCGGGCGATCAAACGAACACCGGCGCGAATTGCGCCAAGGAACCTTAACGAAAGAGCGCGCTCCCTCCGCCCCGGAAACGGTGCTCGCGGGGGGCGGCGT{AC}GCGATCTTCAAATATGTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCACTAGGCCGAGGGCACGCCTGCCTGGGCGTCACACGTCGTTGCCCCC---TCCGCAGCTCCCTCGGGAACGCGGG-CGGGGCGGAAGGTGGCCTCCCGTGCGCCCCGCCGCGCGGTTGGCATAAATACCAAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGCTTTCAAAACCCCCCCGTTGCGTGCCGTGCGCGCCCGTCGCGACTCGAGGGCTCGCTTGCCCCTCTGCTTCGCTCCGGCGACGCTCTCAAC
;
END;