#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 14:02 GMT

TreeBASE (cc) 1994-2008

Study reference:
Oh S., & Potter D. 2003. Phylogenetic utility of the second intron of <i>LEAFY</i>
in <i>Neillia</i> and <i>Stephanandra</i> (Rosaceae) and implications for the
origin of <i>Stephanandra</i>. Molecular Phylogenetics and Evolution, 29: 203-215.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1071]

BEGIN TAXA;
        TITLE  TaxonLabelSet11307;
        DIMENSIONS NTAX=19;
        TAXLABELS
            Neillia_affinis_144_A
            Neillia_gracilis_255
            Neillia_sinensis_140_A
            Neillia_sinensis_149
            Neillia_thibetica_145_A
            Neillia_thibetica_169_A
            Neillia_thyrsiflora_170_A
            Neillia_thyrsiflora_254_A
            Neillia_thyrsiflora_258_A
            Neillia_uekii_152_PCR
            Neillia_uekii_168_PCR
            Physocarpus_amurensis_265_A
            Physocarpus_capitatus_082_A
            Stephanandra_chinensis_147
            Stephanandra_chinensis_172_PCR
            Stephanandra_incisa_102_A
            Stephanandra_incisa_160_PCR
            Stephanandra_tanakae_162_PCR
            Stephanandra_tanakae_171_PCR
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M708]

	TITLE 'Neillia_LFY';
	LINK TAXA = TaxonLabelSet11307;
	DIMENSIONS NCHAR=1818;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990       1000       1010       1020       1030       1040       1050       1060       1070       1080       1090       1100       1110       1120       1130       1140       1150       1160       1170       1180       1190       1200       1210       1220       1230       1240       1250       1260       1270       1280       1290       1300       1310       1320       1330       1340       1350       1360       1370       1380       1390       1400       1410       1420       1430       1440       1450       1460       1470       1480       1490       1500       1510       1520       1530       1540       1550       1560       1570       1580       1590       1600       1610       1620       1630       1640       1650       1660       1670       1680       1690       1700       1710       1720       1730       1740       1750       1760       1770       1780       1790       1800       1810       1820       ]
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Neillia_affinis_144_A              CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAACGCTAATT----TCTACCGCGGTAAATACTTCGTCATTTACAACCTGCTCGTTGTGGGCCCATCGTTGGCTAGTGGGCCGCAATTGGAGAAGCATGCTGACACGTTCAATATAAATGTT-CAAACT--AAATCTAGG-------AGCCCAAGTTCACAAGAAAT-AAAATCATTA--ATAG-TGTGTTGCTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCGTTTGGTATTACTTCTAT-GGAAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGCATCTCCAACAACCATAAAAA-------ATACTTTTAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCATGGGTCAAGACCAAATGTTGACCCA-----CTAATAATTAATC-GTGTTCTTCTCTTTCATAGTAAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTTTGTAGGATAAAAATCTAGACACAATTGTTGGTGCAGAGTGCAGACGACTTCTATTG-TGTACG------GTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTGTTTTTTTTTTCTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATGTATAATTGGACGGATTAAGCAGCTTACTTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Neillia_gracilis_255               CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAACGCTAATT----TCTACCGCGGTAAATACTTCGTCATTTACAACCTGCTCGTTGTGGGCCCATCGTTGGCTAGTGGGCCGCAATTGGAGAAGCATGCTGACACGTTCAATATAAATGTT-CGAACT--AAATCTAGG-------AGCCCAAGTTCACAAGAAAT-AAAATCATTA--ATAG-TGTGTTACTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCGTTTGGTATTACTTCTAT-GGAAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGCATCTCCAACAACCATAAAAA-------ATACTTTTAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCATGGGTCAAGACCAAATGTTGACCCA-----CTAATAATTAATC-CTGTTCTTCTCTTTCATAGTAAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTTTGTAGGATAAAAATCTAGACCCAATTGTTGGTGCAGAGTGCAGACGACTTCTATTG-TGTACG------GTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTGTTTTTTTTTTCTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATGTATAATTGGACGGATTAAGCAGCTTACTTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Neillia_sinensis_140_A             CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAACGCTAATT----TCTACCGTGGTAAATACTTTGTCATTTACAACCTGATCGTTGTGGGCCCATCGTTGGCTAGTGGGCCGCAATTGGAGAGGCATTCTGACACCTTCAATATAAATGTT-CGAACT--AAATCTAGG-------AGCCCAAGTTCACGAGAAAT-AAAATCATTA--ATAG-TTTGGTACTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCGTTTGGGATTACTTTTATCGAAAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTCTGTCTCCAACAACCATAAAAA-------ATACTTTTAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCATGGGTCAAGACCAAATG---ACTCA-----CTAATAATTAATC-GTGTTCTTCTCTTTCATAGAAAAAAAACAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTTTGTAGGATAAAAATCTAGACCCAATTGTTGGTGCA-------GACGACTTCTATTG-TGTACG--ATAGGTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTTTTTTT-----CTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATATATAATTGGACGGATTAAGCAGCTTACCTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Neillia_sinensis_149               CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAATGCTAATT----TCTACCGTGGTAAATACTTTGTCATTTACAACCTGATCGTTGTGGGCCCATCGTTGGCTAGTGGGCCGCAATTGGAGAGGCATTCTGACACCTTCAATATAAATGTT-CGAACT--AAATCTAGG-------AGCCCAAGTTCACAAGAAAT-AAAATCATTA--ATAG-TTTGGTACTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCGTTTGGGATTACTTTTATCGAAAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGTGTCTCCAACAACCATAAAAA-------ATACTTTTAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCATGGGTCAAGACCAAATG---ACTCA-----CTAATAATTAATC-GTGTTCTTCTCTTTCATAGAAAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTTTGTAGGATAAAAATCTAGACCCAATTGTTGGTGCA-------GACGACTTCTATTG-TGTACG--ATAGGTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTTTTTCTTT---CTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATATATAATTGGACGGATTAAGCAGCTTACCTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Neillia_thibetica_145_A            CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAACACTAATT----TCTACCGTGGTAAATACTTTGTCATTTACAACCTGATCGTTGTGGGCCCATCGTTGGCTAGTGGGCCGCAATTGGAGAGGCATTCTGACACCTTCAATATAAATGTT-CGAACT--AAATCTAGAATCTAGGAGCCCAAGTTCACAAGAAAT-AAAATCATTA--ATAG-TTTGGTACTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCGTTTGGGATTACTTTTATCGAAAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGTGTCTCCAACAACCATAAAAA-------ATAC---TAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCATGGGTCAAGACCAAATG---ACTCA-----CTAATAATTAATC-GTGTTCTTCTCTTTCATAGAAAAAA--GGCTTATTTATTGATATGCCCCCTGGAACATCACATTTGTTCCACTTTGCCCCATGAAATTTTAAATGGGTCACTTAACCCCCTGGACCACCATAACGTGTATCACTTTGCCCCCTGTAACTTTAAATAGGTCACTTAACCCCTGAACCACCATACCATGTATCACTTTGCCCCCTGGACCACCACCATACCGTGTATCACTTTGCCGTCTTGGCTTAATCCTTTCAAATATATACATACCTAACCACTGTATTCACCAAAATTCTGGAATGAAAAAGAAACAATTCTATTTTTCTCTCCTCTGTTTTCTATTGTCTATGTCCTGTTTAAAATCTTTTACTTTGAACGAGAACTCACACTAAACAATAGTGACTATTTCTTGTTTTAAGGGGCTTTTGGAATGAGAAAGAAACGACATAGCCCTGATTCAGGAAGATAATGTACAATGTAATTTCGGGTTTCTGGTTAGTAAATAGGGTTATGTTGTTTGTTTCTGAATAAGGAAGATGATGTACAATGTAAGCACCTTATTACCCTCAAAGTTAACGATTCAATTGACGGAATTGGCGTGAAATGACAAAGGGATACACGGTATGGTGGTCTAGGAGGTTAAGTGACCCATTTAAAGTTCCAGGGGGCAAAGTGATACATGGTATGGTGGTCAGGGGGTTAAGTGACCCATTTAAAGTTTCAGGGGGCAAACTGGAACAAATGTGATGTTTCAGGGGGCATATCAATAGATAAGCCTAGAAAAAAACACTTGCACTATTTTGTAGGATAAAAATCTAGACCCAATTGTTGGTGCA-------GACGACTTCTATTG-TGTACG--ATAGGTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTTTTTT------CTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATATATAATTGGACGGATTAAGCAGCTTACCTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Neillia_thibetica_169_A            CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGATTTACACCCCTCCCTAC---GTTTTTACAAACGCTAATTAATTTCTACCGTGGTAAATACTTTGTCATTTACAACCTGATCGTTGTGGGCCCATCGTTGGCTAGTGGGCCGCAATTGGAGAGGCATTCTGACACCTTCAATATAAATGTT-CGAACT--AAATCTAGG-------CGCCCAAGTTCACAAGAAAT-AAAATCATTA--ATAG-TTTGGTACTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCGTTTGGGATTACTTTTATCGAAAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGTGTCTCCAACAACCCTAAAAA-------ATACTTTTAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCATGGGTCAAGACCAAATG---ACTCA-----CTAATAATTAATC-GTGTTCTTCTCTTTCATAGAAAAAA--TGCTTATTTATTGATATGTCCCCTGGAACATCACATTTGTTCTACTTTGCCCCCTGAAATTTTAAATGGGTCACTTAACCCCCTGGACCACCATAACGTGTATCACTTTGCCCCCTGCAACTTTAAATAGGTCACTTAACCCCTGAACCACCATACCATGTATCACTTTGCCCCCTGGACCACCACCATACCGTGTATCACTTTGCCGTCTTGGCTTAATCCTTTCAAATATATACATACCTAACCACTGTATTCACCAAAATTTTGGAATGAAAAAAAAACAATTCTATTTTTCTCTCCTTTGTTTTCTATTGTCTATGTCCTGTTTAAAATCTTTTACTTTGAACGAGAACTTACACTAAACAATAGTGACTATTGCTTGTTTTAAGGGGCTTTTGGAATGAGAAAGAAACGACATAGCCCTGATTCAGGAAGATAATGTACAATGTAATTTCGGGTTTCTGGTTAGTAAATAGGGTTATGTTGTTTGTTTCTGAATAAGGAAGATGATGTACAATGTAAGCACCTTATTACCCTCAAAGTTAACGATTCAATTGACGGAATTGGCGTGAAATGACAAAGTGATACACGATATGGTGGTCTAGGAGGTTAAGTGACTCATTTAAAGTTCCAGGGGGCAAAGTGATACATGGTATGGTGGCCAGGGGGTTAAGTGACCCATTTAAAGTTTCAGGGGGCAAACTGGAACAAATGTGATGTTTCAGGGGGCATATCAATAGATAAGCCTAGAAAAAAACACTTGCACTATTTTGTAGGATAAAAATCTAGACCCAATTGTTGGTGCA-------GACGACTTCTATTG-TGTACG--ATAGGTGAATGTTTTATGTTTTCTTCCATAATTTGAAATGTTTTTTTGTT-------CTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATATATAATTGGACGGATTAAGCAGCTTACCTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Neillia_thyrsiflora_170_A          CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAACGCTAATT----TCTACCGTGGTAAATACTTCGTCATTTACAACCTGATTGTTGTGGGCCCATCGTTGGCTAGTGGGCCGCAATTGGAGAGGCATGCTGACACGTTCAATATAAATGTT-GGAACT--AAATCTAGG-------AGCCCAAGTTCACAAGAAAT-AAAATCATTA--ATAG-TTTGTTTCTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGG---CGTTTGGTATTACTTCTAT-GGAAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGCATCTCCAACAACCATAAAAA-------ATACTTTTAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCATGGGTCAAGACCAAATGTTGACCAAAATCACTAATAATTAATC-GTGTTCTTGTCTTTCATAGTAAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTTTGTAGGATAAAAATCTAGGCCCAATTGTTGGTGCA-------GACGACTTCTATTG-TGTACG------GTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTTTTT-------CTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATGTATAATTGGACGGATTAAGCAGCTTACTTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Neillia_thyrsiflora_254_A          CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAACGCTAATT----TCTACCGTGGTAAATACTTCGTCATTTATAACCTGATTGTTGTGGGCCCATCGTTGGCTAGTGGGCCGCAATTGGAGAAGCATGCTGACACGTTCAATATAAATGTT-CGAACT--AAATGTAGG-------AGCCCAAGTTCACAAGAAAT-AAAATCATTATAATAG-TTTGTTACTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCGTTTGGTATTACTTCTAT-GGAAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGCATCTCCAACAACCATAAAAA-------ATACTTTTAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCATGGGTCAAGACCAAATGTTGACCCA-----CTAATAATTAATC-GTGTTCTTGTCTTTCATAATAAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTTTGTAGGATAAAAATCTAGACCCAATTGTTGGTGCA-------GACGACTTCTATTG-TGTACG------GTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTTTTT-------CTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATGTATAATTGGACGGATTAAGCAGCCTACTTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Neillia_thyrsiflora_258_A          CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAACGCTAATT----TCTACCGTGGTAAATACTTCGTCATTTACAACCTGATTGTTGTGGGCCCATCGTTGGCTAGTGGGCCGCAATTGGAGAAGCATGCTGACACGTTCAATATAAATGTT-CGAACT--AAATGTAGG-------AGCCCAAGTTCACAAGAAAT-AAAATCATTATAATAG-TTTGTTACTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCGTTTGGTATTACTTCTAT-GGAAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGCATCTCCAACAACCATAAAAA-------ATACTTTTAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCATGGGTCAAGACCAAATGTTGACCCA-----CTAATAATTAATC-GTGTTCTTGTCTTTCATAGTAAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTTTGTAGGATAAAAATCTAGACCCAATTGTTGGTGCA-------GACGACTTCTATTG-TGTACG------GTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTTTTT-------CTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATGTATAATTGGACGGATTAAGCAGCCTACTTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Neillia_uekii_152_PCR              CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAACGCTAATT----TCTACCGTGGTAAATACTTTGTCATTTACAACCTGATCGTTGTGGGCCCATCGTTGGCTAGTGGGCCGCAATTGGAGAGGCATGCTGACACCTTCAATATATATGTT-CGAACT--AAATCTGGG-------AGCCCAAGTTCACAAGAAAT-AAAATCATTA--ATAG-TTTGTTCCTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCATTTGGGATTACTTCTATAGAAAACACTTTCA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGCGTCTCCAACAACCATCAAAA-------ATACTTTTAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATCTCAACCATGGGTCAAGACCAAATGTTGACCCA-----CTAATAATTAATC-GTGTTCTTTTCTTTCATAGAAAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTGTGTAGGATAAAAATCTAGACCCAATTGTTGGTGCA-------GACGACTTCTATTG-TGTACG--ATAGGTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTTTATTTT----CTAACATTAACAACTGTCGTGGGTACTAATTGTGCATTATATATAATTGGACGGATTAAGCAGCTTACCTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Neillia_uekii_168_PCR              CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAACGCTAATT----TCTACCGTGGTAAATACTTTGTCATTTACAACCTGATCGTTGTGGGCCCATCGTTGGCTAGTGGGCCGCAATTGGAGAGGCATGCTGACACCTTCAATATATATGTT-CGAACT--AAATCTGGG-------AGCCCAAGTTCACAAGAAAT-AAAATCATTA--ATAG-TTTGTTCCTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCATTTGGGATTACTTCTATAGAAAACACTTTCA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGCGTCTCCAACAACCATCAAAA-------ATACTTTTAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATCTCAACCATGGGTCAAGACCAAATGTTGACCCA-----CTAATAATTAATC-GTGTTCTTTTCTTTCATAGAAAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTGTGTAGGATAAAAATCTAGACCCAATTGTTGGTGCA-------GACGACTTCTATTG-TGTACG--ATAGGTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTTTATTTT----CTAACATTAACAACTGTCGTGGGTACTAATTGTGCATTATATATAATTGGACGGATTAAGCAGCTTACCTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Physocarpus_amurensis_265_A        CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGACTTACCCTCCTCCCTACGATATTGTTAGAAACGATAATT----TCTACTGTGGTAAATACTT-GTAATTTACAACCTGATCTTTGTGGGCCCATTGTAGGCTAGTGGGCCACAATTGAAGAGGCCTGCTGACACCTTCAATATGAATGTTT-GAGCT--AACTGTAGG-------AGCCCAAATTCACAAGAAATCAAAATCTTTA--ATAGGTTTGTTACTAATTTAGGAATTTTGCCACTTAGCACTACGGTTGAGTAGTATTGTTGAGTAGTATTTTTCTTCACTTATAAGTCAGAGGTCTTAGGTTCAAGTCTCGGCAAGCCCATTGTGTAGCTTAGTCTAATTCTCACCCTTTTAGTGTAAATATCGTTGTATTTAAAAAAAAAATTAATTTAGGAACTTTGGATTCCTTTGAAATTACTTCTATAGAATACACTTTTACCTATAAATACTTCTTTTACTAAAAGCACAGCAAAAGCATTCGGGAGTGCTTCTCCAAGAACCATAAAAATGCGTTCATTATTTTAA----CCAAA-CACTATCAGCAACACTTGTGGATTTTTGAAAGCGCTTTTAGCCCTGTAAAATAGGCTCTAAATATTCCAACATTTATCTAAATTTGGTTTGACTGGCCAGATGTTAGACAGTGATTGATTTCAAACATGGGTCAAGACCAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCATAATTTTGTAGGAAAAAAGTCTAGACCCAATTGTTAGTGCA-------TTTGACT---ATTATTGTATCCGATAGGTGAATGTTTTCTTTTTTGTTCTACAGTTTGAAGTGTTTTT----------AACTAACATTAACAACTGTCGTAAGTACTAACGGTGC----ATAATAATTAGACGGATTAAGTATCTTACTTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Physocarpus_capitatus_082_A        CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGACTTACCCTCCTCCCTACGATATTGTTAGAAACGATAATT----TCTACTGTGGTAAATACTT-GTAATTTACAACCTGATCTTTGTGGGCCCATTGTAGGCTAGTGGGCCACAATTGAAGAGGCCTGCTGACACCTTCAATATAAATGTTTTGAGCT--AACTGTAGG-------AGCCCAAATTCACAAGAAATCAAAATCTTTA--ATAGGTTTGTTACTAATTTAGGAACTTTGCCACTTAGCACTACGGTC-------------TAGTGGTATTTCTCTTCACTTGTAAGTCAGAGGTCTTAGGTTCAAGTCTCGGCAAATCCATTGTGTGGCTTAGCCTAATTCTCACACTTTTAGTGTAAATATCGTTGTATTTAAAAAAAAA-CTAATTTAGGAACTTTGGATTCCTTTGGAATTACTTCTATAGAATACACTTTTACCTATAAATACTTCTTTTACTAAAAGCACAACAAAAGCACTCGGGAGTGCGTCTCCAAGAACCATAAAAATGCGTTCATTATTTTAA----CCAAA-CACTATCAGCAGCACTTGTGGATTTTTGAAAGCACTTTTAGCCCTGTAATATAGGCTCTAAATATTCCAACATTTATCTAAATTTGGTTTGACTGGCCAGATGTTAGACAGTGATTGATTTCAAACATGGGTCAAGACCAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCATAATTTTGTAGGAAAAAAGTCTAGACCCAATTGTTAGTGCA-------TTCGACT---ATTATTATATCCGATAGGTGAATGTTTTCTTTTTTGTTCTACAGTTTGAAGTGTTTTT----------AACTAACATTAACAACTGTCGTAACTACTAACGGTGC----ATAATTATTAGACGGATTAAGTATCTTACTTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Stephanandra_chinensis_147         CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAACGCTAATT----TCTACCGTGGTAAATACTTCGTCATTTACAACCTGATCGTTGTGGGCCCATCGTTGGCTAGTGGCCCGCAATTGGAGAGGCATGCTGGCACGTTCAATATAAATGTT-CGAACTATAAATCTAGG------------------------------AATAATTA--ATAG-TTTGTTACTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCATTT---------------ACAAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGCATCTCCAACAACCATAAAAA-------ATACTTTTAGAGTAAAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCATGGGTCAAGACCAAATGTTGATCCA-----CTAATAATTAATC-GTGTTCTTCTCTTTCATAGTAAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTTTGTAGGATAAAAATCTAGACTCAATTGTTGGTGCA-------GACGACTTCTATTG-TGTACG------GTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTGTTTTTTTTTCCTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATGTATAATTGGACGGATTAAGCAGCTTACTTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Stephanandra_chinensis_172_PCR     CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAACGCTAATT----TCTACCGTGGTAAATACTTCGTCATTTACAACCTGATCGTTGTGGGCCCATCGTTGGCTAGTGGCCCGCAATTGGAGAGGCATGCTGGCACGTTCAATATAAATGTT-CGAACTATAAATCTAGG------------------------------AATAATTA--ATAG-TTTGTTACTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCATTT---------------ACAAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGCATCTCCAACAACCATAAAAA-------ATACTTTTAGAGTAAAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCATGGGTCAAGACCAAATGTTGATCCA-----CTAATAATTAATC-GTGTTCTTCTCTTTCATAGTAAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTTTGTAGGATAAAAATCTAGACTCAATTGTTGGTGCA-------GACGACTTCTATTG-TGTACG------GTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTGTTTTTTTTTCCTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATGTATAATTGGACGGATTAAGCAGCTTACTTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Stephanandra_incisa_102_A          CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAACGCTAATT----TCTACCGTGGTAAATACTTCGTCATTTACAACCTGATCGTTGTGGGCCCATCGTTGGCTAGTGGCCCGCAATTGGAGAGGCATGCTGACACGTTCAATATAAATGTT-CGAACT--AAATCTAGG------------------------------AATAATTA--ATAG-TTTGTTACTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCATTTGGGATTACTTCTAT-AGAAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGCATCTCCAACAACCATAAAAA-------ATACTTTTAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCATGGGTCAAGACCAAATGTTGATCCA-----CTAATAATTAATC-GTGTTCTTCTCTTTCATAGTAAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTTTGTAGGATAAAAATCTAGACCCAATTGTTGGTGCA-------GACGACTTCTATTG-TGTACG------GTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTGTTTTTTTTTTCTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATGTATAATTGGACGGATTAAGCAGCTTACTTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Stephanandra_incisa_160_PCR        CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCCTCCCTAC---GTTTTTACAAACGCTAATT----TCTACCGTGGTAAATACTT{AC}GTCATTTACAACCTGATCGTTGTGGGCCCATCGTTGGCTAGTGGCCCGCAATTGGAGAGGCATGCTGACACGTTCAATATAAATGTT-CGAACT--AAATCTAGG------------------------------AATAATTA--ATAG-TTTGTTACTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTTGGGTTCATTTGGGATTACTTCTAT-AGAAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGCATCTCCAACAACCATAAAAA-------ATACTTTTAGAGTA{AC}AAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCATGGGTCAAGACCAAATGTTGATCCA-----CTAATAATTAATC-GTGTTCTTCTCTTTCATAGTAAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTTTGTAGGATAAAAATCTAGACCCAATTGTTGGTG{AC}A-------GACGACTTCTATTG-TGTACG------GTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTGTTTTTTTTTTCTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATGTATAATTGGACGGATTAAGCAGCTTACTTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Stephanandra_tanakae_162_PCR       CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCGTCCCTAC---GTTTATACAAACGCTAATT----TCTACCGTGGTAAATACTTCGTCATTTACAACCTGATCGTTGTGGACCCATCGTTGGCTAGTGGGCCGCAATTGGAGAGGCATGCTGACACGTTCAATATAAATGTT-CGAACT--AAATCTAGG-------AGCCCAAGTTCACAAGAAAT-AAAATCATTA--ATAG-TTTGTTACTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTAGGGTTCGTTTGGGATTATTTCTAT-AGGAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGCATCTCCAACAACCATAAAAA-------ATACTTTTAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCGTGGGTAAAGACCAAATGTTGACCCA-----CTAATAATTAATCAGTCTTCTTCTCTTTCATAGTTAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTTTGTAGGATAAAAATCTAGACCCAGTTGTTGGTGCA-------GACGACTTCTATTG-TGTACG------GTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTTTTT-------CTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATGTATAATTGGACGGATTAAGCAGCTTACTTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
Stephanandra_tanakae_171_PCR       CAGAACATTGCCAAGGAGCGCGGTGAGAAATGTCCCACCAAGGTACGGAGTTACACCCGTCCCTAC---GTTTTTACAAACGCTAATT----TCTACCGTGGTAAATACTTCGTCATTTACAACCTGATCGTTGTGGACCCATCGTTGGCTAGTGGGCCGCAATTGGAGAGGCATGCTGACACGTTCAATATAAATGTT-CGAACT--AAATCTAGG-------AGCCCAAGTTCACAAGAAAT-AAAATCATTA--ATAG-TTTGTTACTAAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTTAGGGTTCGTTTGGGATTATTTCTAT-AGGAACACTTTTA-------------------TTAAAAGCACAACAAAAA-----GGAAGTGCATCTCCAACAACCATAAAAA-------ATACTTTTAGAGTACAAAATCAC--------------------------------TTTTA-------------------------------------------------------------------------ATT-ATTTCAACCGTGGGTAAAGACCAAATGTTGACCCA-----CTAATAATTAATCAGTCTTCTTCTCTTTCATAGTTAAAAA-CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCACTATTTTGTAGGATAAAAATCTAGACCCAATTGTTGGTGCA-------GACGACTTCTATTG-TGTACG------GTGAATGTTTTATGTTTTCTTCTATAATTTGAAATGTTTTTTTTTTT------CTAACATTAACAACTGTCGTAAGTACTAATTGTGCATTATGTATAATTGGACGGATTAAGCAGCTTACTTATTATATATGCAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGGCAGGGGCAAGCTACATCAAC
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