#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 13:39 GMT

TreeBASE (cc) 1994-2008

Study reference:
Weimin Y., Giblin-davis R., Braasch H., Morris K., & Thomas W. 2004. Phylogenetic
relationships among Bursaphelenchus species (Nematoda: Parasitaphelenchidae) inferred
from nuclear ribosomal and mitochondrial DNA sequence. Molecular Phylogenetics
and Evolution, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1109]

BEGIN TAXA;
        TITLE  TaxonLabelSet11409;
        DIMENSIONS NTAX=11;
        TAXLABELS
            Bursaphelenchus_fraudulentus
            Bursaphelenchus_mucronatus_163_JP
            Bursaphelenchus_mucronatus_164_Hanestad_NOR
            Bursaphelenchus_mucronatus_165_FIN
            Bursaphelenchus_mucronatus_166_DE
            Bursaphelenchus_mucronatus_167_Gruenberg_DE
            Bursaphelenchus_mucronatus_168_Zusmarshausen_DE
            Bursaphelenchus_xylophilus_185_CAN
            Bursaphelenchus_xylophilus_186_JP
            Bursaphelenchus_xylophilus_187_New_Brunswick_CAN
            Bursaphelenchus_xylophilus_188_Quebec_CAN
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M785]

	TITLE Xylophilus_28S;
	LINK TAXA = TaxonLabelSet11409;
	DIMENSIONS NCHAR=729;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                            10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720         ]
[                                                             .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         ]
Bursaphelenchus_fraudulentus                         AAGAGAGTGCAAGAGAACGTGAAACCGGTGTAATGGAAGCGAATGGAGCCGACGTATCTAGTGCGTATTCAGCTGTCCGTTCGTGCGATTGGGGTTTGTGCATTTCCGCAAGGTGTGTCTGGCCCCAGTGTCGTGCGGTCGGTCGGTGCATTTGCGTACGGAGTGCGCCGGGTTGTGTGGTGTTGTCGGACGAGGCGTGCTTAGAGGACCCGGGCTTCGGCGCTGGGAACCCTGGGCGCGTGGAGTTCGGTTGGTGCTGCGCAGCTTTGTGGAGACGTGGGCGTTGCGCGTGCCGCGGTGTCGGTGGGCTCGGTTCGGGTGGTACACATGTGTGCAGCCCTTATGGGGTCGGTCGATGTTGTGGTGTGCTCCGCGTTCTTCCCGGTGTATAGTCGGTGACCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTTTATGGTATGCGCAAGTCATTGGGTTTGTCGAAGCCTAAAGGCGTAATGAAAGTGAGACATTACTTGTCTGAACGTGACTGGGTGCGGCACTCGTGCGGCCCAAGCAACGTTGCCCCGTTTCGAGGACTTGTCCTGTTGCGGAGGTTGAGCGTATGCTATGAGACCCGAAAGATGGTGAACTATGCCTGAACAGGACGAAGCCAGAGGAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGATTTTGGTATAGGGGCGCAAGACTAATCGAACCATC
Bursaphelenchus_mucronatus_163_JP                    AAGAGAGTGCAAGAGAACGTGAAACCGGTGTAATGGAAGCGAATGGAGCCGACGTATCTAGTGCGTATTCAGCCTTCTGGGCGTACGATTGGGGTTTGTGCATTTCCGCAAGGTGTGCCGGGTCCTATTGTCGTGCGTTCGGTTGGTGCATTTGCGTACGGAGTGCGCCGGGTTGTGTGGTGTTGTCGGACGATGCGCGTTTAGAGGACCCGGGCTTCGGCGCTGGGAACCCTGGGCGTGCGGAGTTCGGTTGGCGCTGCGCAGCTTTGTGGAGACGTGGGTTTTTCGCGTGCTGCGGTGTCGGCAGGCTCGGTTTGGGTGGTACACATGTGTGCAGCCCTTATCGGGTGGGTCGGTGTTGTGGTGTGCTCTACGTTCTTCCCGGTGTTCAGTCGGTGACCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTTTATGGTATGCGCAAGTCATTGGGTTTGTCGAAGCCTAAAGGCGTAATGAAAGTGAGACATTACTTGTCTGAACGTGACTGGGTGCGGCACTCGTGCGGCCCAAGCAACGTTGCCCCGTTTCGAGGACTTGTCCTGATGCGGAGGTTGAGCGTATGCTATGAGACCCGAAAGATGGTGAACTATGCCTGAACAGGACGAAGCCAGAGGAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGATTTTGGTATAGGGGCGCAAGACTAATCGAACCATC
Bursaphelenchus_mucronatus_164_Hanestad_NOR          AAGAGAGTGCAAGAGAACGTGAAACCGGTGTAATGGAAGCGAATGGAGCCGACGTATCTAGTGCGTATTCAGCCTTCTGGGCGTGCGATTGGGGTTTGTGCATTTCCGCAAGGTGTGCCTGGCCTTATTGTCGTGCGTTCGGTTGGTGCATTTGCGTACGGAGTGCGCCGGGTTGTGTGGTGTTGTCGGACGATGCGCGTTTAGAGGACCCGGGCTTCGGCGCTGGGAACCCTGGGCGTGCGGAGTTCGGTTGGCGCTGCGCAGCTTTGTGGAGACGTGGGTTTTTCGCGTGCCGCGGTGTCGACAGGCTCGGTTCGGGTGGTACACATGTGTGCAGCCCTTATGGGGTCGGTCGGTGTTGTGGTGTGCTCTACGTTCTTCCCGGTGTTCAGTCGGTGACCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTTTATGGTATGCGCAAGTCATTGGGTTTGTCGAAGCCTAAAGGCGTAATGAAAGTGAGACATTACTTGTCTGAACGTGACTGGGTGCGGCATTCGTGCGGCCCAAGCAACGTTGCCCCGTTTCGAGGACTTGTCCTGATGCGGAGGTTGAGCGTATGCTATGAGACCCGAAAGATGGTGAACTATGCCTGAACAGGACGAAGCCAGAGGAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGATTTTGGTATAGGGGCGCAAGACTAATCGAACCATC
Bursaphelenchus_mucronatus_165_FIN                   AAGAGAGTGCAAGAGAACGTGAAACCGGTGTAATGGAAGCGAATGGAGCCGACGTATCTAGTGCGTATTCAGCCTTCTGGGCGTGCGATTGGGGTTTGTGCATTTCCGCAAGGTGTGCCTGGCCTTATTGTCGTGCGTTCGGTTGGTGCATTTGCGTACGGAGTGCGCCGGGTTGTGTGGTGTTGTCGGACGATGCGCGTTTAGAGGACCCGGGCTTCGGCGCTGGGAACCCTGGGCGTGCGGAGTTCGGTTGGCGCTGCGCAGCTTTGTGGAGACGTGGGTTTTTCGCGTGCCGCGGTGTCGACAGGCTCGGTTCGGGTGGTACACATGTGTGCAGCCCTTATGGGGTCGGTCGGTGTTGTGGTGTGCTCTACGTTCTTCCCGGTGTTCAGTCGGTGACCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTTTATGGTATGCGCAAGTCATTGGGTTTGTCGAAGCCTAAAGGCGTAATGAAAGTGAGACATTACTTGTCTGAACGTGACTGGGTGCGGCATTCGTGCGGCCCAAGCAACGTTGCCCCGTTTCGAGGACTTGTCCTGATGCGGAGGTTGAGCGTATGCTATGAGACCCGAAAGATGGTGAACTATGCCTGAACAGGACGAAGCCAGAGGAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGATTTTGGTATAGGGGCGCAAGACTAATCGAACCATC
Bursaphelenchus_mucronatus_166_DE                    AAGAGAGTGCAAGAGAACGTGAAACCGGTGTAATGGAAGCGAATGGAGCCGACGTATCTAGTGCGTATTCAGCCTTCTGGGCGTGCGATTGGGGTTTGTGCATTTCCGCAAGGTGTGCCTGGCCTTATTGTCGTGCGTTCGGTTGGTGCATTTGCGTACGGAGTGCGCCGGGTTGTGTGGTGTTGTCGGACGATGCGCGTTTAGAGGACCCGGGCTTCGGCGCTGGGAACCCTGGGCGTGCGGAGTTCGGTTGGCGCTGCGCAGCTTTGTGGAGACGTGGGTTTTTCGCGTGCCGCGGTGTCGACAGGCTCGGTTCGGGTGGTACACATGTGTGCAGCCCTTATGGGGTCGGTCGGTGTTGTGGTGTGCTCTACGTTCTTCCCGGTGTTCAGTCGGTGACCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTTTATGGTATGCGCAAGTCATTGGGTTTGTCGAAGCCTAAAGGCGTAATGAAAGTGAGACATTACTTGTCTGAACGTGACTGGGTGCGGCATTCGTGCGGCCCAAGCAACGTTGCCCCGTTTCGAGGACTTGTCCTGATGCGGAGGTTGAGCGTATGCTATGAGACCCGAAAGATGGTGAACTATGCCTGAACAGGACGAAGCCAGAGGAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGATTTTGGTATAGGGGCGCAAGACTAATCGAACCATC
Bursaphelenchus_mucronatus_167_Gruenberg_DE          AAGAGAGTGCAAGAGAACGTGAAACCGGTGTAATGGAAGCGAATGGAGCCGACGTATCTAGTGCGTATTCAGCCTTCTGGGCGTGCGATTGGGGTTTGTGCATTTCCGCAAGGTGTGCCTGGCCTTATTGTCGTGCGTTCGGTTGGTGCATTTGCGTACGGAGTGCGCCGGGTTGTGTGGTGTTGTCGGACGATGCGCGTTTAGAGGACCCGGGCTTCGGCGCTGGGAACCCTGGGCGTGCGGAGTTCGGTTGGCGCTGCGCAGCTTTGTGGAGACGTGGGTTTTTCGCGTGCCGCGGTGTCGACAGGCTCGGTTCGGGTGGTACACATGTGTGCAGCCCTTATGGGGTCGGTCGGTGTTGTGGTGTGCTCTACGTTCTTCCCGGTGTTCAGTCGGTGACCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTTTATGGTATGCGCAAGTCATTGGGTTTGTCGAAGCCTAAAGGCGTAATGAAAGTGAGACATTACTTGTCTGAACGTGACTGGGTGCGGCATTCGTGCGGCCCAAGCAACGTTGCCCCGTTTCGAGGACTTGTCCTGATGCGGAGGTTGAGCGTATGCTATGAGACCCGAAAGATGGTGAACTATGCCTGAACAGGACGAAGCCAGAGGAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGATTTTGGTATAGGGGCGCAAGACTAATCGAACCATC
Bursaphelenchus_mucronatus_168_Zusmarshausen_DE      AAGAGAGTGCAAGAGAACGTGAAACCGGTGTAATGGAAGCGAATGGAGCCGACGTATCTAGTGCGTATTCAGCCTTCTGGGCGTACGATTGGGGTTTGTGCATTTCCGCAAGGTGTGCCGGGTCCTATTGTCGTGCGTTCGGTTGGTGCATTTGCGTACGGAGTGCGCCGGGTTGTGTGGTGTTGTCGGACGATGCGTGTTTAGAGGACCCGGGCTTCGGCGCTGGGAACCCTGGGCGTGCGGAGTTCGGTTGGCGCTGCGCAGCTTTGTGGAGACGTGGGTTTTTCGCGTGCTGCGGTGTCGGCAGGCTCGGTTTGGGTGGTACACATGTGTGCAGCCCTTATCGGGTGGGTCGGTGTTGTGGTGTGCTCTACGTTCTTCCCGGTGTTCAGTCGGTGACCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTTTATGGTATGCGCAAGTCATTGGGTTTGTCGAAGCCTAAAGGCGTAATGAAAGTGAGACATTACTTGTCTGAACGTGACTGGGTGCGGCACTCGTGCGGCCCAAGCAACGTTGCCCCGTTTCGAGGACTTGTCCTGATGCGGAGGTTGAGCGTATGCTATGAGACCCGAAAGATGGTGAACTATGCCTGAACAGGACGAAGCCAGAGGAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGATTTTGGTATAGGGGCGCAAGACTAATCGAACCATC
Bursaphelenchus_xylophilus_185_CAN                   AAGAGAGTGCAAGAGAACGTGAAACCGGTGTAATGGAAGCGAATGGAGCCGACGTATCTAGTGCGTATTCAGCCTTCTGGGCGCGTGATTGGTGTTTGTGCATTGCCGCAAGGTGTGCCTGGCGCTATTGTCGCGTGTTCGGTTGGTGCATTTGCGTACGGAGTGCGCCGGGTTGTGTGGTGTTGTCGGACGATGCGCGTTTAGAGGACCCGGGCTTCGGCGCTGGGAACCCTGGGCGTGTGGAGTTCGGTTGGCGCTGCGCAGCTTTGTGGAGACGTGGGTTTTTCGCGTGCCGCGGTGTCGACAGGCTCGGTTCGGGTGGTACACATGTGTGCAGCCCTTATGGGGTCGGTCGGTGTTGTGGTGTGCTCTGCGTTCTTCCCGGTGTTCAGTCGGTGACCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTTTATGGTATGCGCAAGTCATTGGGTTTGTCGAAGCCTAAAGGCGTAATGAAAGTGAGACATTACTTGTCTGAACGTGACTGGGTGCGGCATTCGTGCGGCCCAAGCAACGTTGCCCCGTTTCGAGGACTTGTCCTGATGCGGAGGTTGAGCGTATGCTATGAGACCCGAAAGATGGTGAACTATGCCTGAACAGGACGAAGCCAGAGGAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGATTTTGGTATAGGGGCGCAAGACTAATCGAACCATC
Bursaphelenchus_xylophilus_186_JP                    AAGAGAGTGCAAGAGAACGTGAAACCGGTGTAATGGAAGCGAATGGAGCCGACGTATCTAGTGCGTATTCAGCCTTCTGGGCGCGTGATTGGTGTTTGTGCATTGCCGCAAGGTGTGCCTGGCGCTATTGTCGCGTGTTCGGTTGGTGCATTTGCGTACGGAGTGCGCCGGGTTGTGTGGTGTTGTCGGACGATGCGCGTTTAGAGGACCCGGGCTTCGGCGCTGGGAACCCTGGGCGTGTGGAGTTCGGTTGGCGCTGCGCAGCTTTGTGGAGACGTGGGTTTTTCGCGTGCCGCGGTGTCGACAGGCTCGGTTCGGGTGGTACACATGTGTGCAGCCCTTATGGGGTCGGTCGGTGTTGTGGTGTGCTCTGCGTTCTTCCCGGTGTTCAGTCGGTGACCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTTTATGGTATGCGCAAGTCATTGGGTTTGTCGAAGCCTAAAGGCGTAATGAAAGTGAGACATTACTTGTCTGAACGTGACTGGGTGCGGCATTCGTGCGGCCCAAGCAACGTTGCCCCGTTTCGAGGACTTGTCCTGATGCGGAGGTTGAGCGTATGCTATGAGACCCGAAAGATGGTGAACTATGCCTGAACAGGACGAAGCCAGAGGAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGATTTTGGTATAGGGGCGCAAGACTAATCGAACCATC
Bursaphelenchus_xylophilus_187_New_Brunswick_CAN     AAGAGAGTGCAAGAGAACGTGAAACCGGTGTAATGGAAGCGAATGGAGCCGACGTATCTAGTGCGTATTCAGCCTTCTGGGCGCGTGATTGGTGTTTGTGCATTGCCGCAAGGTGTGCCTGGTGCTATTGTCGCGTGTTCGGTTGGTGCATTTGCGTACGGAGTGCGCCGGGTTGTGTGGTGTTGTCGGACGATGCGCGTTTAGAGGACCCGGGCTTCGGCGCTGGGAACCCTGGGCGTGCGGAGTTCGGTTGGCGCTGCGCAGCTTTGTGGAGACGTGGGTTTTTCGCGTGCCGCGGTGTCGACAGGCTCGGTTCGGGTGGTACACATGTGTGCAGCCCTTATGGGGTCGGTCGGTGTTGTGGTGTGCTCTGCGTTCTTCCCGGTGTTCAGTCGGTGACCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTTTATGGTATGCGCAAGTCATTGGGTTTGTCGAAGCCTAAAGGCGTAATGAAAGTGAGACATTACTTGTCTGAACGTGACTGGGTGCGGCATTCGTGCGGCCCAAGCAACGTTGCCCCGTTTCGAGGACTTGTCCTGATGCGGAGGTTGAGCGTATGCTATGAGACCCGAAAGATGGTGAACTATGCCTGAACAGGACGAAGCCAGAGGAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGATTTTGGTATAGGGGCGCAAGACTAATCGAACCATC
Bursaphelenchus_xylophilus_188_Quebec_CAN            AAGAGAGTGCAAGAGAACGTGAAACCGGTGTAATGGAAGCGAATGGAGCCGACGTATCTAGTGCGTATTCAGCCTTCTGGGCGCGTGATTGGTGTTTGTGCATTGCCGCAAGGTGTGCCTGGTGCTATTGTCGCGTGTTCGGTTGGTGCATTTGCGTACGGAGTGCGCCGGGTTGTGTGGTGTTGTCGGACGATGCGCGTTTAGAGGACCCGGGCTTCGGCGCTGGGAACCCTGGGCGTGCGGAGTTCGGTTGGCGCTGCGCAGCTTTGTGGAGACGTGGGTTTTTCGCGTGCCGCGGTGTCGACAGGCTCGGTTCGGGTGGTACACATGTGTGCAGCCCTTATGGGGTGGGTCGGTGTTGTGGTGTGCTCTGCGTTCTTCCCGGTGTTCAGTCGGTGACCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTTTATGGTATGCGCAAGTCATTGGGTTTGTCGAAGCCTAAAGGCGTAATGAAAGTGAGACATTACTTGTCTGAACGTGACTGGGTGCGGCATTCGTGCGGCCCAAGCAACGTTGCCCCGTTTCGAGGACTTGTCCTGATGCGGAGGTTGAGCGTATGCTATGAGACCCGAAAGATGGTGAACTATGCCTGAACAGGACGAAGCCAGAGGAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGATTTTGGTATAGGGGCGCAAGACTAATCGAACCATC
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = Xylophilus_28S) = 
		N: 1-729;
CODONPOSSET  CodonPositions (CHARACTERS = Xylophilus_28S) = 
		N: 1-729;
END;