#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 13:34 GMT

TreeBASE (cc) 1994-2008

Study reference:
Ye W., Lee C., Scheffrahn R., Aleong J., Su N., Bennett G., & Scharf M. 2004. Phylogenetic
relationships of nearctic Reticulitermes species (Isoptera: Rhinotermitidae)
with particular reference to Reticulitermes arenincola Goellner. Molecular
Phylogenetics and Evolution, 30(3): 815-822.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1132]

BEGIN TAXA;
        TITLE  TaxonLabelSet11466;
        DIMENSIONS NTAX=13;
        TAXLABELS
            Coptotermes_formosanus
            Reticulitermes_arenincola_Sd
            Reticulitermes_flavipes
            Reticulitermes_flavipes_Hh
            Reticulitermes_flavipes_Rh
            Reticulitermes_flavipes_Rw
            Reticulitermes_flavipes_Sm
            Reticulitermes_flavipes_Wl
            Reticulitermes_hageni
            Reticulitermes_tibialis_Ag
            Reticulitermes_tibialis_Fs
            Reticulitermes_virginicus
            Reticulitermes_virginicus_Jp
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M153]

	TITLE 12S;
	LINK TAXA = TaxonLabelSet11466;
	DIMENSIONS NCHAR=447;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -;

MATRIX
[                                        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       ]
[                                         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .       ]
Coptotermes_formosanus           TACTATGTTACGACTTATCTCATTAACAA--CAAACGAGAGCGACGGGCGATGTGTACATATCTTAGAACCCA-TATCACGAAAACAATCTACAAGACATTACAATCAAATCCAATTTCATACTAATAA-TCCAACCAATAATCCAAAC--AACAAAGAACAATGTAATCCATCAATAACACTTAGAAACAAGCTGCACCTTGACCTGAAATAAATCAAAATAAAGAAACCAGAAAATTAATAAACCCTAAAAGCATAATCAATAAACGGCGGTATACAAACCA---TAGCAACTAAGTAAGGTCCAACGCGGACTATCGATAACGAGACAGATTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATACCTAATACTACTCAAGCAAAAAAATTAACATTCTAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_arenincola_Sd     TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGTCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATAAAACCAAATATAGGAACAAGAAAATTACATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAC-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_flavipes          TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGTCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATATAGGAACAAGAAAATTACATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAAAATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_flavipes_Hh       TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGTCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATATAGGAACAAGAAAATTACATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAAAATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_flavipes_Rh       TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGTCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATAAAACCAAATATAGGAACAAGAAAATTACATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAC-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_flavipes_Rw       TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATCAAACCAAATATAGGAACAAGAAAATTATATGACCCTAAAAAGATAATCAATAAACGGCGATATACAAACCAAT-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_flavipes_Sm       TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATCAAACCAAATATAGGAACAAGAAAATTATATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_flavipes_Wl       TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGTCAGTAATTAAAACCAACAATCCAAAC---ACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATAAAACCAAATATAGGAACAAGAAAATTAAATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAC-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_hageni            TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATACCTCAGAACCAATTATCATAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAAACCACCAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATCAAACCAAATAGAGGAACAAGAAAATTATATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAATAAAACAACTAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAGTACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_tibialis_Ag       TACTATGTTACGACTTATCTCATTAACAAAT-AAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAACATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAAA-CAACAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATAAAGGAACAAGAAAATTATATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACTAAGTAAGGTCCAACGCGGACTATCGATAACGAGACAGGTTCCTCTGAGCGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_tibialis_Fs       TACTATGTTACGACTTATCTCATTAACAAAT-AAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAACATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAAA-CAACAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATAAAGGAACAAGAAAATTATATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACTAAGTAAGGTCCAACGCGGACTATCGATAACGAGACAGGTTCCTCTGAGCGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_virginicus        TACTATGTTACGACTTATCTCATTAACAAGTAAAACGAGAGCGACGGGCGATGTGTACATACCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAA-CCAACAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATAAAGGAACAAGAAAATTGTATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAATTAAACAACTAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_virginicus_Jp     TACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGCCGATGTGTACATACCTCAGAACCAATTATCATAAAAACAATCTTCAAAACATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAACCCAACAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATAAAGGAACAAGAAAATTATATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAATTAAACAACTAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = 12S) = 
		N: 1-447;
CODONPOSSET  CodonPositions (CHARACTERS = 12S) = 
		N: 1-447;
END;