#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 13:29 GMT

TreeBASE (cc) 1994-2008

Study reference:
Ye W., Lee C., Scheffrahn R., Aleong J., Su N., Bennett G., & Scharf M. 2004. Phylogenetic
relationships of nearctic Reticulitermes species (Isoptera: Rhinotermitidae)
with particular reference to Reticulitermes arenincola Goellner. Molecular
Phylogenetics and Evolution, 30(3): 815-822.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1132]

BEGIN TAXA;
        TITLE  TaxonLabelSet11468;
        DIMENSIONS NTAX=31;
        TAXLABELS
            Coptotermes_formosanus
            Reticulitermes_arenincola_Sd
            Reticulitermes_flavipes
            Reticulitermes_flavipes_AF107479
            Reticulitermes_flavipes_AF107480
            Reticulitermes_flavipes_AF107481
            Reticulitermes_flavipes_AF107482
            Reticulitermes_flavipes_AF107484
            Reticulitermes_flavipes_AF107489
            Reticulitermes_flavipes_AF525321
            Reticulitermes_flavipes_AF525322
            Reticulitermes_flavipes_AF525323
            Reticulitermes_flavipes_AF525324
            Reticulitermes_flavipes_AF525325
            Reticulitermes_flavipes_AF525326
            Reticulitermes_flavipes_AY027477
            Reticulitermes_flavipes_Sm
            Reticulitermes_flavipes_Wl
            Reticulitermes_hageni
            Reticulitermes_hesperus_AF525329_CA
            Reticulitermes_santonensis_AF262607
            Reticulitermes_santonensis_AF291742
            Reticulitermes_santonensis_AF291743
            Reticulitermes_santonensis_AF525343
            Reticulitermes_santonensis_AY027473
            Reticulitermes_santonensis_AY027474
            Reticulitermes_santonensis_AY027475
            Reticulitermes_santonensis_AY027476
            Reticulitermes_tibialis_Ag
            Reticulitermes_tibialis_Fs
            Reticulitermes_virginicus
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2406]

	TITLE COII_Protein;
	LINK TAXA = TaxonLabelSet11468;
	DIMENSIONS NCHAR=228;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                               10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220        ]
[                                                .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .        ]
Coptotermes_formosanus                  MTTWLNMSLQDGASPIMEQLVFFHDHVLMIMLMITTTVSYMMVTLIRNKQTSRFMLEGQMIETTWTIAPAIILVFIAMPSLRLLYLMDEVHNPTLTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEEQQESTFRLLDTDNRIVLPINSPIRLIVTAADVLHSWTIPSLGVKTDATPGRLNQTSFSISRPGILYGQCSEICGANHSFMPITIESVPAKYFINWVSKLSE
Reticulitermes_arenincola_Sd            MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes                 MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQASFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_AF107479        MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQASFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_AF107480        MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQASFSINHPGILYGQCSEICGANHSFSPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_AF107481        MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSFEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_AF107482        MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFLLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSCEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_AF107484        MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_AF107489        MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQASSSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_AF525321        MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASAFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_AF525322        MTTWLNMTLQDGASPIMEHLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_AF525323        MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTATNVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_AF525324        MTTWLNMTLFDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_AF525325        MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKGVGHQWYWSYEGSDFTKLEFASYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYEQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_AF525326        MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQESTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_AY027477        MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQASSSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_Sm              MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILSGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_flavipes_Wl              MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_hageni                   MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQTSTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQSSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_hesperus_AF525329_CA     MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQPSTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQTSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_santonensis_AF262607     MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_santonensis_AF291742     MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_santonensis_AF291743     MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_santonensis_AF525343     MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINTPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_santonensis_AY027473     MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILAFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_santonensis_AY027474     MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_santonensis_AY027475     MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_santonensis_AY027476     MTTWLNMTLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQVSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_tibialis_Ag              MTTWLNMSLQDGASPIMEQMIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPAMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQMSTFRLLDTDNRIVLPMNSPIRMVVTAADVLHSWTIPSLGVKTDATPGRLNQTSFSINHPGVLYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_tibialis_Fs              MTTWLNMSLQDGASPIMEQMIFFHDHTLMIMLMIITTVMYMMTTLLWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPAMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQMSTFRLLDTDNRIVLPMNSPIRMVVTAADVLHSWTIPSLGVKTDATPGRLNQTSFSINHPGVLYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
Reticulitermes_virginicus               MTTWLNMSLQDGASPIMEQLIFFHDHTLMIMLMIITTVMYMMTALPWNKHTSRFMLEGQLIETTWTIAPAIILVFIAMPSLRLLYLMDEIHNPTMTLKAVGHQWYWSYEYSDFTKLEFDSYMIPQEENQASTFRLLDTDNRIVLPMNSPIRLVVTAADVLHSWTIPSLGVKTDATPGRLNQTSFSINHPGILYGQCSEICGANHSFMPITIESVSANHFINWVSSLSE
;
END;