#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 13:34 GMT

TreeBASE (cc) 1994-2008

Study reference:
Ye W., Lee C., Scheffrahn R., Aleong J., Su N., Bennett G., & Scharf M. 2004. Phylogenetic
relationships of nearctic Reticulitermes species (Isoptera: Rhinotermitidae)
with particular reference to Reticulitermes arenincola Goellner. Molecular
Phylogenetics and Evolution, 30(3): 815-822.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1132]

BEGIN TAXA;
        TITLE  TaxonLabelSet11467;
        DIMENSIONS NTAX=9;
        TAXLABELS
            Coptotermes_formosanus
            Reticulitermes_arenincola_Sd
            Reticulitermes_flavipes
            Reticulitermes_flavipes_Sm
            Reticulitermes_flavipes_Wl
            Reticulitermes_hageni
            Reticulitermes_tibialis_Ag
            Reticulitermes_tibialis_Fs
            Reticulitermes_virginicus
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2407]

	TITLE combined;
	LINK TAXA = TaxonLabelSet11467;
	DIMENSIONS NCHAR=1590;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -;

MATRIX
[                                        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990       1000       1010       1020       1030       1040       1050       1060       1070       1080       1090       1100       1110       1120       1130       1140       1150       1160       1170       1180       1190       1200       1210       1220       1230       1240       1250       1260       1270       1280       1290       1300       1310       1320       1330       1340       1350       1360       1370       1380       1390       1400       1410       1420       1430       1440       1450       1460       1470       1480       1490       1500       1510       1520       1530       1540       1550       1560       1570       1580       1590]
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Coptotermes_formosanus           ATGACAACATGATTAAACATAAGACTACAAGATGGAGCATCCCCCATTATAGAACAATTAGTCTTCTTCCACGACCATGTTCTAATAATTATACTAATAATCACCACAACCGTATCATACATAATGGTCACCTTAATCCGAAATAAACAAACCAGACGATTCATACTAGAAGGACAAATGATTGAAACCACATGAACCATTGCACCAGCAATCATCCTTGTGTTTATCGCCATACCATCACTACGACTCCTATACCTAATAGATGAAGTTCACAACCCAACACTAACACTAAAAGCAGTCGGACACCAATGATACTGAAGATATGAATATTCAGACTTTACAAAATTAGAATTCGACTCATACATAATCCCCCAAGAAGAACAACAAGAAAGAACATTCCGACTACTAGACACGGACAACCGAATCGTCCTACCAATCAATTCACCAATTCGACTAATCGTTACAGCAGCAGACGTCCTACACTCATGAACAATTCCAAGACTAGGGGTAAAAACAGACGCCACACCAGGACGACTAAATCAAACAAGATTCTCAATCAGTCGTCCTGGTATCCTATATGGACAATGCTCAGAGATTTGCGGAGCAAACCACAGATTCATACCCATCACAATTGAAAGAGTACCAGCAAAATACTTTATTAACTGAGTTTCAAAACTAAGAGAACTTAATCCAACATCGAGGTCGCAAACCTCCCTGCCGATAAGAACTCTCAAGGAAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTATAATCAAAATAAATGGATCAAATAAATATAAATCAATATAACCAAAATCAAGAGGAGTT-AATTATATTCCTCCCATCACCCCAACAAAACAAAAAGTCCACTCACCAATAAAACAAACAAACAACAAACAAACAAATAAACCAAATGTTAAACTCTATAGGGTCTTCTCGTCCCACAAAAACATCTAAGAATTTTAACTCAAAAACCAAATTCAATAAAACATTCAACATTAAGACAGCTTGTGCCTCGTCAAGCCATTCATTCCAGATCACAATTAAAGAACTAATGATTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACACTCAA-GTCAGCGGGCAGGCCATACTTCAAAAACTAATACTATGTTACGACTTATCTCATTAACAA--CAAACGAGAGCGACGGGCGATGTGTACATATCTTAGAACCCA-TATCACGAAAACAATCTACAAGACATTACAATCAAATCCAATTTCATACTAATAA-TCCAACCAATAATCCAAA--CAACAAAGAACAATGTAATCCATCAATAACACTTAGAAACAAGCTGCACCTTGACCTGAAATAAATCAAAATAAAGAAACCAGAAAATTAATAAACCCTAAAAGCATAATCAATAAACGGCGGTATACAAACCA---TAGCAACTAAGTAAGGTCCAACGCGGACTATCGATAACGAGACAGATTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATACCTAATACTACTCAAGCAAAAAAATTAACATTCTAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_arenincola_Sd     ATGACAACATGATTAAACATAACACTACAAGACGGAGCATCTCCCATCATAGAACAATTAATCTTCTTCCACGATCATACATTAATAATCATATTAATAATCATCACAACCGTTATATACATAATAACCACCCTACTTTGAAATAAACACACCAGACGATTCATACTAGAAGGACAACTAATTGAAACTACATGAACAATTGCACCAGCAATCATCCTAGTATTCATTGCAATACCATCCTTACGACTTCTATATCTAATAGACGAAATCCACAACCCAACAATAACCCTAAAGGCAGTAGGACATCAATGATACTGAAGATATGAATACTCAGACTTCACAAAATTAGAATTCGACTCTTACATAATCCCACAAGAGGAAAATCAAGCAAGAACTTTCCGACTACTAGACACAGATAATCGAATTGTACTACCCATAAATTCACCAATCCGACTGGTAGTGACAGCAGCAGACGTATTGCACTCATGAACAATCCCAAGACTAGGGGTGAAAACAGACGCCACACCAGGGCGACTAAATCAAGTAAGATTCTCAATCAATCACCCAGGTATCCTATACGGACAATGCTCAGAAATCTGCGGAGCTAATCACAGATTTATGCCCATTACAATCGAAAGAGTATCGGCAAATCACTTCATTAATTGAGTCTCAAGTCTAAGAGAACTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAGCAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCAT-AA---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTTATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAATACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGTCAGTAATTAAAACCAACAATCCAAA---CACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATAAAACCAAATATAGGAACAAGAAAATTACATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAC-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_flavipes          ATGACAACATGATTAAACATAAGACTACAAGACGGAGCATCTCCCATCATAGAACAACTGATCTTCTTCCACGATCATACATTAATAATTATATTAATAATCATCACAACCGTTATATACATGATAACCACCCTACTTTGAAATAAACATACTAGACGATTCATACTAGAAGGACAACTAATTGAAACTACATGAACAATTGCACCAGCAATTATCTTAGTATTCATTGCAATACCATCCTTACGACTTCTATATCTAATAGACGAAATCCACAACCCAACAATAACCCTAAAAGCAGTGGGACATCAATGATACTGAAGATATGAATATTCAGACTTCACAAAATTAGAATTCGACTCTTACATAATCCCACAAGAGGAAAATCAAGCAAGAACTTTCCGACTACTAGACACAGATAATCGAATTGTACTACCCATAAATTCACCAATCCGACTAGTAGTGACAGCAGCAGACGTATTGCACTCATGAACAATCCCAAGACTAGGGGTGAAAACAGACGCTACACCAGGACGACTAAATCAAGCAAGATTCTCAATCAATCACCCAGGTATCCTATACGGACAATGCTCAGAAATCTGCGGAGCTAATCACAGATTTATGCCCATTACAATCGAAAGAGTATCGGCAAATCACTTCATTAATTGAGTCTCAAGTCTAAGAGAACTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTATTCTTACAAT-AAAATAAATGGGATAAGCAAATATAAATAAATATAACAACATAAAGGAGGGGTTAAACAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCAT-AA---TAAATGTAAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAATACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGTCAGTAATTAAAACCAACAATCCAAA---CACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATATAGGAACAAGAAAATTACATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAAAATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_flavipes_Sm       ATGACAACATGATTAAACATAACACTACAAGACGGAGCATCTCCCATCATAGAACAATTGATCTTCTTCCACGATCATACATTAATAATTATATTAATAATCATCACAACCGTTATATACATAATAACCACCCTACTTTGAAATAAACACACCAGACGATTCATACTAGAAGGACAACTAATTGAAACTACATGAACAATTGCACCAGCAATTATCCTAGTATTCATTGCAATACCATCCTTACGACTTCTATATCTAATAGACGAAATCCACAACCCAACAATAACCCTAAAGGCAGTAGGACATCAATGATACTGAAGATATGAATACTCAGACTTCACAAAATTAGAATTCGACTCTTATATAATCCCACAAGAGGAAAATCAAGCAAGAACTTTCCGACTACTAGACACAGATAATCGAATTGTACTACCCATAAATTCACCAATCCGACTGGTAGTGACAGCAGCAGACGTATTGCACTCATGAACAATCCCAAGACTAGGTGTGAAAACAGACGCCACACCAGGACGACTAAATCAAGTAAGATTCTCAATCAATCACCCGGGTATCCTATCCGGACAGTGCTCAGAAATCTGCGGAGCTAATCACAGATTTATGCCCATTACAATCGAAAGAGTATCGGCAAATCACTTCATTAATTGAGTCTCAAGTCTAAGAGAACTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAGCAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCGTGAA---TAAATGTTAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTTATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAATACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAA---CACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATCAAACCAAATATAGGAACAAGAAAATTATATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_flavipes_Wl       ATGACAACATGATTAAACATAACACTACAAGACGGAGCATCTCCCATCATAGAACAATTAATCTTCTTCCACGATCATACATTAATAATCATATTAATAATCATCACAACCGTTATATACATAATAACCACCCTACTTTGAAATAAACACACCAGACGATTCATACTAGAAGGACAACTAATTGAAACTACATGAACAATTGCACCAGCAATCATCCTAGTATTCATTGCAATACCATCCTTACGACTTCTATATCTAATAGACGAAATCCACAACCCAACAATAACCCTAAAGGCAGTAGGACATCAATGATACTGAAGATATGAATACTCAGACTTCACAAAATTAGAATTCGACTCTTACATAATCCCACAAGAGGAAAATCAAGCAAGAACTTTCCGACTACTAGACACAGATAATCGAATTGTACTACCCATAAATTCACCAATCCGACTGGTAGTGACAGCAGCAGACGTATTGCACTCATGAACAATCCCAAGACTAGGGGTGAAAACAGACGCCACACCAGGGCGACTAAATCAAGTAAGATTCTCAATCAATCACCCAGGTATCCTATACGGACAATGCTCAGAAATCTGCGGAGCTAATCACAGATTTATGCCCATTACAATCGAAAGAGTATCGGCAAATCACTTCATTAATTGAGTCTCAAGTCTAAGAGAACTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAGCAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCAT-AA---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTTATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAATACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGTCAGTAATTAAAACCAACAATCCAAA---CACAAATAACAATGTAACCCACCAA-AACACTTAGAGA-AAGCTGCACCTTGACCTGAAATAAAACCAAATATAGGAACAAGAAAATTAAATGACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAC-AAACAACCAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_hageni            ATGACAACATGATTAAACATAAGACTACAAGACGGAGCATCTCCCATCATAGAACAACTGATCTTCTTCCATGACCATACATTAATAATCATATTAATAATCATCACAACCGTAATGTACATAATAACTACCCTACTTTGGAATAAACACACTAGACGATTTATATTAGAAGGACAACTAATTGAAACTACATGAACAATTGCACCAGCAATCATCCTAGTATTCATTGCAATACCATCCTTACGACTCCTATACCTAATAGACGAAATCCACAACCCGACAATAACTCTAAAAGCAGTAGGACACCAATGGTACTGGAGATATGAATACTCAGACTTCACAAAATTAGAATTTGACTCTTACATAATTCCACAGGAGGAAAATCAAACAAGAACCTTCCGACTACTAGACACAGACAACCGAATCGTACTACCCATAAACTCACCAATCCGACTAGTAGTAACAGCAGCAGACGTATTACACTCATGAACAATTCCAAGACTAGGGGTGAAAACAGACGCCACACCGGGACGGCTAAATCAATCAAGATTCTCAATCAATCACCCAGGTATCCTATATGGACAATGCTCAGAAATCTGTGGAGCAAATCATAGATTTATGCCTATCACAATCGAAAGAGTATCGGCAAATCACTTCATTAATTGAGTCTCAAGCCTAAGAGAACTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAACAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATTATATCCCTCCCATCACCCCAACAAAACATACTAAATGGCCC-AGTGAAACCTCACAAAC-GAAAAGAGACCAT-A---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCCCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACA-TCAAAGTCAGCGGGCAGGCCATACTTCAAAAACTAATACTATGTTACGACTTATCTCATTAACAAATAAAACGAGAGCGACGGGCGATGTGTACATACCTCAGAACCAATTATCATAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAAACCACCAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATCAAACCAAATAGAGGAACAAGAAAATTATATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAATAAAACAACTAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAGTACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_tibialis_Ag       ATGACAACATGATTAAACATAAGACTACAGGACGGAGCATCTCCCATCATAGAACAAATAATCTTCTTCCACGATCATACATTAATAATTATATTAATAATTATTACAACCGTAATGTACATAATAACCACGTTACTTTGAAATAAGCATACTAGACGATTCATATTAGAAGGACAACTAATTGAAACTACATGAACAATCGCGCCGGCAATCATCCTGGTATTCATTGCAATACCATCCTTACGACTCCTATATCTAATAGACGAAATTCATAACCCAGCAATAACCCTAAAAGCAGTAGGACATCAATGATACTGAAGATATGAATATTCAGACTTCACAAAACTAGAATTTGACTCTTACATAATCCCACAGGAAGAAAATCAAATAAGAACCTTCCGACTATTAGATACAGACAACCGAATTGTACTACCCATAAACTCACCAATTCGAATAGTAGTAACAGCAGCAGACGTGCTACACTCATGAACAATTCCAAGATTAGGCGTGAAAACGGACGCTACACCAGGACGATTAAATCAAACAAGATTCTCAATCAACCACCCCGGTGTTCTATACGGACAGTGCTCAGAAATCTGCGGGGCAAATCACAGATTTATACCCATTACAATCGAAAGAGTATCGGCAAATCACTTCATTAATTGAGTCTCAAGCCTAAGAGAACTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGGGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATTAATGGATCAAGTAAATATAAATAAATATAACAACCTAAAGGAGGGGTTAAATAA-ATCCCTCCCATCACCCCAACAAAACATACTAAACGG-CCTAGTGAACCCTCACAAACAGAAAAGGACCAT-AA---TAAATGTTAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCCCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACA-TCAAAGTCAGTGGGCAGGCCATACTTCAAAAACTAATACTATGTTACGACTTATCTCATTAACAAAT-AAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAACATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAAA-CAACAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATAAAGGAACAAGAAAATTATATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACTAAGTAAGGTCCAACGCGGACTATCGATAACGAGACAGGTTCCTCTGAGCGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_tibialis_Fs       ATGACAACATGATTAAACATAAGACTACAGGACGGAGCATCTCCCATCATAGAACAAATAATCTTCTTCCACGATCATACATTAATAATTATATTAATAATTATTACAACCGTAATGTACATAATAACCACGTTACTTTGAAATAAGCATACTAGACGATTCATATTAGAAGGACAACTAATTGAAACTACATGAACAATCGCGCCGGCAATCATCCTGGTATTCATTGCAATACCATCCTTACGACTCCTATATCTAATAGACGAAATTCATAACCCAGCAATAACCCTAAAAGCAGTAGGACATCAATGATACTGAAGATATGAATATTCAGACTTCACAAAACTAGAATTTGACTCTTACATAATCCCACAGGAAGAAAATCAAATAAGAACCTTCCGACTATTAGATACAGACAACCGAATTGTACTACCCATAAACTCACCAATTCGAATAGTAGTAACAGCAGCAGACGTGCTACACTCATGAACAATTCCAAGATTAGGCGTGAAAACGGACGCTACACCAGGACGATTAAATCAAACAAGATTCTCAATCAACCACCCCGGTGTTCTATACGGACAGTGCTCAGAAATCTGCGGGGCAAATCACAGATTTATACCCATTACAATCGAAAGAGTATCGGCAAATCACTTCATTAATTGAGTCTCAAGCCTAAGAGAACTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGGGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATTAATGGATCAAGTAAATATAAATAAATATAACAACCTAAAGGAGGGGTTAAATAA-ATCCCTCCCATCACCCCAACAAAACATACTAAACGG-CCTAGTGAACCCTCACAAACAGAAAAGGACCAT-AA---TAAATGTTAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCCCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACA-TCAAAGTCAGTGGGCAGGCCATACTTCAAAAACTAATACTATGTTACGACTTATCTCATTAACAAAT-AAACGAGAGCGACGGGCGATGTGTACATATCTCAGAACCAATTATCACAAAAACAATCTTCAAAACATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCCAAAA-CAACAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATAAAGGAACAAGAAAATTATATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAAT-AAACAACTAAGTAAGGTCCAACGCGGACTATCGATAACGAGACAGGTTCCTCTGAGCGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
Reticulitermes_virginicus        ATGACAACATGATTAAACATAAGACTACAAGACGGAGCATCTCCCATCATAGAACAACTAATCTTCTTCCACGACCATACATTAATAATTATACTAATAATCATCACAACCGTAATGTACATAATAACCGCCCTACCTTGAAACAAACACACTAGACGATTTATATTAGAAGGACAACTAATCGAAACCACATGAACAATTGCACCAGCAATCATCCTAGTATTCATCGCGATACCATCCTTACGACTTCTATATCTAATAGACGAAATCCACAACCCAACAATAACTCTAAAAGCAGTAGGACACCAGTGATACTGAAGATATGAATATTCAGACTTCACAAAATTAGAATTTGACTCTTACATAATTCCACAAGAGGAAAATCAAGCAAGAACCTTCCGACTATTAGACACAGACAACCGAATTGTACTACCCATAAACTCACCAATCCGATTAGTAGTAACAGCAGCAGACGTACTACACTCATGAACAATTCCAAGACTAGGAGTGAAAACAGACGCCACACCAGGACGATTAAATCAAACAAGATTCTCAATCAATCACCCAGGTATCCTATACGGACAATGCTCAGAAATCTGTGGAGCAAATCATAGATTTATGCCTATTACAATCGAAAGAGTATCGGCAAATCACTTCATTAATTGAGTCTCAAGTCTAAGAGAACTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAACAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATTATATCCCTCCCATCACCCCAACAAAACATATTAAACGGCCC-AGTGAACCCTCACAAACAGAAAGTAGACCATAA---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCCCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACA-CTAAAGTCAGCGGGCAGGCCATACTTCAAAAACTAATACTATGTTACGACTTATCTCATTAACAAGTAAAACGAGAGCGACGGGCGATGTGTACATACCTCAGAACCAATTATCACAAAAACAATCTTCAAAATATTACAATCAAATCCAATTTCATGCCAGTAATTAAAACCAACAATCC-AAACCAACAAATAACAATGTAACCCACCAA-TACACTTAGAGA-AAGCTGCACCTTGACCTGAAATTAAACCAAATAAAGGAACAAGAAAATTGTATAACCCTAAAAAGATAATCAATAAACGGCGGTATACAAACCAATTAAACAACTAAGTAAGGTCCAACGTGGACTATCGATAACGAGACAGGTTCCTCTGAACGGAATAAGATACCGCCAAATTCTTTAAGTTTCAAGAACATAACTAATACTACTCAGGC-AAAACATTAACATCCAAAAATAATAGGGTATCTAATCCTAGTTT
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = combined) = 
		N: 1-1590;
CODONPOSSET  CodonPositions (CHARACTERS = combined) = 
		N: 1-1590;
END;