#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 13:41 GMT

TreeBASE (cc) 1994-2008

Study reference:
Ye W., Lee C., Scheffrahn R., Aleong J., Su N., Bennett G., & Scharf M. 2004. Phylogenetic
relationships of nearctic Reticulitermes species (Isoptera: Rhinotermitidae)
with particular reference to Reticulitermes arenincola Goellner. Molecular
Phylogenetics and Evolution, 30(3): 815-822.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1132]

BEGIN TAXA;
        TITLE  TaxonLabelSet11465;
        DIMENSIONS NTAX=11;
        TAXLABELS
            Coptotermes_formosanus
            Reticulitermes_arenincola_Sd
            Reticulitermes_flavipes
            Reticulitermes_flavipes_Sm
            Reticulitermes_flavipes_Wl
            Reticulitermes_hageni
            Reticulitermes_santonensis_AF292025
            Reticulitermes_santonensis_AF292026
            Reticulitermes_tibialis_Ag
            Reticulitermes_tibialis_Fs
            Reticulitermes_virginicus
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2409]

	TITLE 16S;
	LINK TAXA = TaxonLabelSet11465;
	DIMENSIONS NCHAR=459;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -;

MATRIX
[                                               10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450         ]
[                                                .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         ]
Coptotermes_formosanus                  CTTAATCCAACATCGAGGTCGCAAACCTCCCTGCCGATAAGAACTCTCAAGGAAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTATAATCAAAATAAATGGATCAAATAAATATAAATCAATATAACCAAAATCAAGAGGAGTT-AATTATATTCCTCCCATCACCCCAACAAAACAAAAAGTCCACTCACCAATAAAACAAACAAACAACAAACAAACAAATAAACCAAATGTTAAACTCTATAGGGTCTTCTCGTCCCACAAAAACATCTAAGAATTTTAACTCAAAAACCAAATTCAATAAAACATTCAACATTAAGACAGCTTGTGCCTCGTCAAGCCATTCATTCCAGATCACAATTAAAGAACTAATGATTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACACTCAA-GTCAGCGGGCAGGCCATACTTCAAAAACTAA
Reticulitermes_arenincola_Sd            CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAGCAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCAT-AA---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTTATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAA
Reticulitermes_flavipes                 CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTATTCTTACAATCAAAATAAATGGGATAAGCAAATATAAATAAATATAACAACATAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCAT-AA---TAAATGTAAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAA
Reticulitermes_flavipes_Sm              CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAGCAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCGTGAA---TAAATGTTAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTTATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAA
Reticulitermes_flavipes_Wl              CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAGCAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCAT-AA---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTTATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAA
Reticulitermes_hageni                   CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAACAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATTATATCCCTCCCATCACCCCAACAAAACATACTAAAT-GGCCCAGTGAAACCTCACAAAC-GAAAAGAGACCAT-A---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCCCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACA-TCAAAGTCAGCGGGCAGGCCATACTTCAAAAACTAA
Reticulitermes_santonensis_AF292025     CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAGCAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCAT-AA---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTTATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAA
Reticulitermes_santonensis_AF292026     CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAGCAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATAATATCCCTCCCATCACCCCAACAAAACATATTAAACAGCCCTAGTGAACCCTCACAAACAGAAAGAGACCGTGAA---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCTTATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACATTCAAGGTCAGTGGGCAGGCCATACTTCAAAAACTAA
Reticulitermes_tibialis_Ag              CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGGGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATTAATGGATCAAGTAAATATAAATAAATATAACAACCTAAAGGAGGGGTTAAA-TAAATCCCTCCCATCACCCCAACAAAACATACTAAAC-GGCCTAGTGAACCCTCACAAACAGAAAAG-GACCATAA---TAAATGTTAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCCCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACA-TCAAAGTCAGTGGGCAGGCCATACTTCAAAAACTAA
Reticulitermes_tibialis_Fs              CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGGGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATTAATGGATCAAGTAAATATAAATAAATATAACAACCTAAAGGAGGGGTTAAA-TAAATCCCTCCCATCACCCCAACAAAACATACTAAAC-GGCCTAGTGAACCCTCACAAACAGAAAAG-GACCATAA---TAAATGTTAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCCCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACA-TCAAAGTCAGTGGGCAGGCCATACTTCAAAAACTAA
Reticulitermes_virginicus               CTTAATCCAACATCGAGGTCGCAAACCCCCCTGCCGATAAGAACTCTCAAGGGAGATAACGCTGTTATCCCTAAGGTAATTTAATCTTACAATCAAAATAAATGGATCAAACAAATATAAATAAATATAACAACACAAAGGAGGGGTTAAATTATATCCCTCCCATCACCCCAACAAAACATATTAAAC-GGCCCAGTGAACCCTCACAAACAGAAAGTAGACCATAA---TAAATGTCAAACTCTATAGGGTCTTCTCGTCCCATAAAAACATCTAAGAATTTTAACTCAAAGACCAAATTCAATAAACAATTCAAAATTAAGACAGCCCATGCCTCGTCAAGCCATTCATACCAGATCACAATTAAAGAACTAATGACTATGCTACCTTTGCACGGTCAAAATACCGCGGCCCTTCAACA-CTAAAGTCAGCGGGCAGGCCATACTTCAAAAACTAA
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = 16S) = 
		N: 1-459;
CODONPOSSET  CodonPositions (CHARACTERS = 16S) = 
		N: 1-459;
END;