#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 0:33 GMT TreeBASE (cc) 1994-2008 Study reference: Badets M., Whittington I., Lalubin F., Allienne J., Maspimby J., Bentz S., Du preez L., Barton D., Hasegawa H., Tandon V., Imkongwapang R., Ohler A., Combes C., & Verneau O. 2011. Correlating Early Evolution of Parasitic Platyhelminths to Gondwana Break-up. Systematic Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11362] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS Bufo_regularis Hyla_cinerea Hyla_versicolor Hyperolius_viridiflavus Leptodactylus_fuscus Litoria_aurea Phrynohyas_venulosa Physalaemus_cuvieri Ptychadena_mascareniensis Rana_japonica Rana_temporaria Rhacophorus_arboreus Rhacophorus_maximus Rhacophorus_omeimontis Scaphiopus_couchii Schismaderma_carens Smilisca_baudinii Spea_hammondii Strongylopus_fasciatus Xenopus_laevis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M8381] TITLE Nuclear_rhodopsin_anura_matrice; LINK TAXA = Taxa; DIMENSIONS NCHAR=282; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Bufo_regularis ACTGGGGTGGTGCGAAGCCCATTCGAATACCCTCAGTATTACCTGGCAGAGCCATGGCAGTATTCCGTTTTGTGCGCGTACATGTTCCTGCTCATTCTTCTTGGGTTCCCCATCAACTTCATGACCTTGTACGTCACCATCCAGCACAAGAAGCTCCGGACACCCTTGAACTATATCCTGCTGAACTTGGCCTTTGCCAACCACTTCATGGTCCTGTGTGGATTCACCGTCACAATGTACTCCTCAATGAACGGATACTTCGTCTTGGGTGTAACCGGATGC Hyla_cinerea ACTGGGGTGGTGCGAAGCCCATTTGAATACCCTCAGTATTACCTGGCAGAGCCATGGAAATATTCCGTTTTGGCCGCATACATGTTCTTGCTCATTCTCCTCGGCCTCCCTATCAACTTCATGACCTTGTACGTCACCATCCAGCACAAGAAACTCCGAACACCCCTAAACTATATCCTGCTGAATTTGGCATTTGCCAATCACTTCATGGTCCTGGGTGGATTCACCATCACGATGTACAGCTCAATGCACGGATATTTCGTCTTTGGTCATACTGGTTGC Hyla_versicolor ACTGGGGTGGTACGAAGCCCATTTGAATACCCTCAGTATTACCTGGCAGAGCCATGGAAATATTCCATTTTGGCCGCATATATGTTCTTGCTCATTCTCCTTGGCCTCCCTATCAACTTCATGACCTTGTACGTCACCATCCAGCACAAGAAACTCCGAACACCCCTAAACTATATCCTGCTGAATTTGGCATTTGCCAATCACTTCATGGTCCTGGGTGGATTCACCATCACCATGTACAGCTCAATGCACGGATATTTCGTCTTTGGTCATACTGGTTGC Hyperolius_viridiflavus ACTGGGGTAGTACGAAGCCCATTTGAATACCCTCAGTATTACCTGGCAGATCCATGGAAATATGCAGTGCTGGCCGCCTACATGTTCATGCTCATCCTCATCGGCTTCCCCATCAACTTCCTGACCCTGTATGTCACTGTCCAGCATAAAAAGCTGCGGACACCCTTAAACTACATTCTACTGAATCTGGTCTTTGCCAATCATTTCATGGTCCTGTGTGGATTCACCGTGACGTTGTACTCCTCCTTGAATGGCTACTTCGTCTTCGGTCAGACCGGCTGC Leptodactylus_fuscus ACTGGGGTGGTCCGAAGCCCATTTGAATACCCTCAGTATTACCTGGCAGAGCCATGGAAATATTCCGCTTTGGCGGCTTACATGTTCTTGCTCATTCTTCTTGGGTTCCCAATCAACTTCATGACCTTGTATGTGACCGTCCAGCACAAGAAGCTCCGAACACCCTTAAACTATATCCTGTTGAATTTGGCATTTGCCAACCACTTCATGGTCCTGTGTGGATTCACCATCACGATGTACACCTCAATGCACGGATACTTCGTCTTCGGCCAGAATGGATGC Litoria_aurea ACTGGGGTGGTACGAAGCCCATTTGATTACCCTCAGTATTACCTGGCAGAGCCATGGAAATACTCCGCTTTAGCCGCGTACATGTTCTTGCTCATACTTCTTGGGCTCCCAATCAACTTCATGACCTTGTATGTCACTGTCCAGCACAAGAAACTCCGAACACCCTTAAACTATATCCTGCTGAATTTGGCGTTTGCCAATCACTTCATGGTCCTTGGAGGATTCACTGTCACGATGTACTCTTCAATGCATGGATACTTCGTCTTTGGTCAGACCGGTTGC Phrynohyas_venulosa ACTGGGGTGGTACGAAGCCCATTTGAATATCCTCAGTATTACCTGGCAGAGCCATGGAAATATTCCGCCTTGGCTGCATACATGTTCTTGCTCATACTTCTTGGGTTCCCAATCAACTTCATGACATTGTATGTCACCATCCAGCATAAGAAACTCCGAACACCCCTAAACTATATCCTGTTGAATTTGGCATTTGCCAATCACTTCATGGTCCTGGGTGGATTCACCGTCACGATGTACTCCTCAATGCATGGATACTTCGTCTTTGGTCAGACTGGTTGC Physalaemus_cuvieri TCTGGGGTGGTCCGAAGCCCCTTCGAGTACCCTCAGTATTACCTGGCAGAGCCATGGCAGTACTCCGCCCTGAGCGCGTACATGTTCCTGCTCATTCTTCTCGGGCTTCCAATCAACTTCATGACCTTGTACGTCACCATCCAGCACAAGAAACTCCGAACACCCTTAAACTATATCCTGCTGAACTTGGCGTTTGCCAACCACTTCATGGTCCTCTGCGGATTCACCGTCACCATGTACACCTCAATGCACGGATACTTTGTCTTCGGCCAGACCGGTTGC Ptychadena_mascareniensis ACTGGGGTAGTACGAAGCCCCTTTGAATACCCTCAGTATTACCTGGCAGAGCCATGGAAATATTCAGTATTGGCTGCGTACATGTTCATGCTCATTCTTTTTGGGTTCCCAATTAACTTCATGACCCTGTATGTTACCATTCAGCACAAGAAGCTCCGAACACCCTTAAACTACATCCTGCTGAACTTGGTGTTTGCCAACCATTTCATGGTCCTGTGTGGATTCACCGTCACGTTGTACACATC{AC}CT{AG}CATGGATACTTCATTTTTGGACAGACTGGTTGC Rana_japonica ACTGGGGTAGTACGAAGCCCCTTCGACTACCCTCAGTATTACCTGGCAGAGCCATGGAAGTATTCAGTTTTGGCCGCCTACATGTTCTTGCTCATCCTCCTCGGTCTCCCAATCAACTTCATGACCCTCTATGTCACCATCCAGCACAAGAAGCTCCGAACACCCTTAAACTACATCCTGCTAAATTTGGCCTTTGCCAACCACTTCATGGTCCTGTGTGGATTCACCATCACGTTGTACACCTCCCTCCATGGATACTTTGTATTCGGACAGACTGGTTGC Rana_temporaria ACTGGGGTAGTACGAAGCCCCTTCGAATACCCTCAGTATTACCTGGCAGAGCCATGGAAGTATTCAATATTGGCCGCCTACATGTTCTTGCTCATCCTCCTCGGTTTCCCAATCAACTTCATGACCCTCTACGTCACCATCCAGCACAAGAAGCTCCGAACACCCTTAAACTACATCCTGCTAAATCTGGCCTTTGCCAACCACTTCATGGTCCTGTGTGGATTCACCATCACGTTGTACACCTCCCTCCATGGATACTTTGTATTCGGACAGTCCGGTTGC Rhacophorus_arboreus ACTGGGGTAGTACGAAGCCCCTTCGAATACCCTCAGTATTACCTGGCAGAGCCATGGAAGTATTCAGTATTGGCCGCCTACATGTTCATGCTTATCCTCCTCGGTCTCCCAATCAACTTCATGACCTTGTTTGTCACCATCCAGCACAAGAAGCTCCGAACACCCTTAAACTACATCCTGCTGAACTTGGCGTTTGCCAACCACTTCATGGTCCTGTGTGGATTCACCATCACACTGTACACCTCCCTCCATGGATACTTCGTATTTGGACAAAGTGGGTGC Rhacophorus_maximus ACTGGGGTAGTACGAAGCCCCTTCGAATACCCTCAGTATTACCTGGCAGAGCCATGGAAGTATTCAGTATTGGCCGCCTACATGTTCATGCTTATCCTCCTCGGTCTCCCAATCAACTTCATGACCCTGTTTGTCACCATCCAGCACAAGAAGCTCCGAACACCCTTAAACTACATCCTGCTGAACTTGGCGTTTGCCAACCACTTCATGGTCCTGTGTGGATTCACCATCACACTGTACACCTCCCTCCATGGATACTTCGTATTTGGACAGAGTGGGTGC Rhacophorus_omeimontis ACTGGGGTAGTACGAAGCCCCTTCGAATACCCTCAGTATTACCTGGCAGAACCATGGAAGTATTCATTATTGGCCGCCTACATGTTCATGCTTATCCTCCTCGGTCTCCCAATCAACTTCATGACCCTGTTTGTCACCATCCAGCACAAGAAGCTCCGAACACCCTTAAACTACATCCTGCTGAACTTGGCGTTTGCCAACCACTTCATGGTCCTGTGTGGATTCACCATCACACTGTACACCTCCCTCCATGGATACTTCGTATTTGGACAGAGTGGGTGC Scaphiopus_couchii ACTGGGGTGGTACGAAGCCCCTTTGAGTACCCTCAATATTATCTAGCAGAACCATGGAAATATTCCATATTGGCTGCTTACATGTTCCTGTTAATCCTTCTCGGGTTTCCCGTCAACTTCCTAACTTTGTATGTTACCATCCAGCACAAGAAGCTCAGGACACCACTAAATTACATCCTCCTCAACTTGGCTTTTGCCAATCATTTCATGGTCCTCTGTGGTTTCACGGTTACGATGTACAGCTCAATGCATGGCTACTTTGTCTTTGGACAGACCGGGTGC Schismaderma_carens TCTGGGGTGGTGCGAAGCCCATTTGAATACCCTCAGTATTACCTGGCAGAGCCATGGCAATATTCCGTTTTGGCCGCGTACATGTTCCTGCTCATTCTTCTTGGGTTACCAATCAACTTCATGACCTTGTACGTCACCATCCAGCACAAGAAGCTCCGGACACCCTTGAACTATATCCTGCTGAATTTGGCCTTTGCCAACCACTTCATGGTCCTGTGTGGATTCACCATCACCATGTACTCCTCAATGCATGGCTTCTTCGTCTTCGGAATAAACGGTTGC Smilisca_baudinii ACTGGGGTGGTACGAAGTCCATTTGAATACCCTCAGTATTACCTGGCAGAGCCATGGAAATATTCCGTTTTGGCCGCATACATGTTCTTGCTCATACTTCTCGGGCTCCCTATCAACTTCATGACCTTGTACGTCACCATCCAGCACAAGAAACTCAGAACACCCCTAAACTATATCCTGCTGAATTTGGCATTTGCCAATCACTTCATGGTCCTGGGTGGATTCACCATCACGATGTACAGCTCAATGCATGGATATTTCGTCTTTGGTCATTTGGGTTGC Spea_hammondii ACTGGGGTGGTACGAAGCCCCTTTGAGTATCCTCAATATTATTTAGCAGATCCATGGAAATATTCCATACTGGCTGCTTACATGTTCCTGTTGATCCTTCTTGGGTTTCCCGTCAACTTCCTAACTTTGTATGTTACCATCCAGCACAAGAAACTCAGGACACCACTAAATTATATCCTTCTCAACTTGGCTTTTGCCAATCATTTCATGGTCCTCGTTGGTTTCACTGTTACAATCTACTCCTCATTGCATGGCTACTTTGTCTTCGGACAGACCGGGTGC Strongylopus_fasciatus TCTGGGGTAGTACGAAGCCCCTTCGAATATCCTCAGTATTACCTGGCAGAACCATGGCAGTATTCAGTATTGGCTGCCTACATGTGCATGCTTATCCTTCTTGGTCTTCCAATCAACTTCATGACCTTGTACGTGACCATCCAGCACAAGAAGCTCCGAACACCCTTAAACTACATCCTGCTGAACTTGGCGTTTGCCAACCACTTCATGGTCCTGTGTGGATTCACCGTCACGCTGTACAGCTCCCTCCATGGATACTTCGTGCTAGGACAGACTGGTTGT Xenopus_laevis ACTGGGGTGGTACGAAGCCCATTCGATTACCCTCAGTATTACTTAGCAGAGCCATGGCAATATTCAGCACTGGCTGCTTACATGTTCCTGCTCATCCTGCTTGGGTTACCAATCAACTTCATGACCTTGTTTGTTACCATCCAGCACAAGAAACTCAGAACACCCCTAAACTACATCCTGCTGAACCTGGTATTTGCCAATCACTTCATGGTCCTGTGTGGGTTCACGGTGACAATGTACACCTCAATGCACGGCTACTTCATCTTTGGCCAAACTGGTTGC ; END;