#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 18:15 GMT TreeBASE (cc) 1994-2008 Study reference: Chemisquy M.A., & Morrone O. 2012. Molecular phylogeny of Gavilea (Chloraeinae: Orchidaceae) using plastid and nuclear markers. Molecular Phylogenetics and Evolution, 62(3): 889-897. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11664] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=90; TAXLABELS Aa_calceata Aa_leucantha Aa_paleacea Achlydosa_glandulosa_GB1 Achlydosa_glandulosa_GB2 Acianthus_tenellus_ Bipinnula_fimbriata_ Bipinnula_montana_ Brachystele_camporum_ Brachystele_dilatata_ Chloraea_alpina Chloraea_bidentata Chloraea_chica_1 Chloraea_chica_2 Chloraea_chrysantha Chloraea_crispa Chloraea_cylindrostachya_1 'Chloraea cylindrostachya 2-c1' 'Chloraea cylindrostachya 2-c2' 'Chloraea cylindrostachya 2-c3' Chloraea_grandiflora Chloraea_lamellata_ Chloraea_longipetala Chloraea_magellanica_GB1 Chloraea_magellanica_GB2 Chloraea_magellanica_c1 Chloraea_magellanica_c2 Chloraea_membranacea Chloraea_multiflora_ Chloraea_philippii_B Chloraea_praecincta_ 'Chloraea virescens Ar-c1' 'Chloraea virescens Ar-c2' 'Chloraea virescens Ar-c3' 'Chloraea virescens Ar-c4' Chloraea_virescens_Ch Chloraea_viridiflora_c1 Chloraea_viridiflora_c2 Cranichis_apiculata Cranichis_ciliata_ Cranichis_engelii_ Cranichis_longipetiolata_ Cyclopogon_elatus Cynorkis_compacta_ Cynorkis_fastigiata Cynorkis_galeata Cynorkis_grandiflora 'Gavilea araucana Ar-c1' 'Gavilea araucana Ar-c2' 'Gavilea araucana Ch-c1' 'Gavilea araucana Ch-c2' 'Gavilea araucana Ch-c3' Gavilea_australis_Ar Gavilea_gladysiae_ Gavilea_glandulifera_ Gavilea_littoralis_CH170 Gavilea_littoralis_Ch Gavilea_longibracteata_c1 Gavilea_longibracteata_c2 Gavilea_longibracteata_c3 Gavilea_lutea_ Gavilea_lutea_GB1 Gavilea_lutea_GB2 Gavilea_lutea_GB3 'Gavilea odoratissima Pat-c1' 'Gavilea odoratissima Pat-c2' 'Gavilea odoratissima Pat-c3' Gavilea_odoratissima_SV Gavilea_supralabellata_Ar 'Gavilea supralabellata Ch-c1' 'Gavilea supralabellata Ch-c2' 'Gavilea supralabellata Ch-c3' Gavilea_trullata Gavilea_venosa_1 Gavilea_venosa_2 Geoblasta_penicillata_ Gonatostylis_vieillardii Goodyera_pubescens_ Goodyera_repens_ Habenaria_hexaptera_c2 Habenaria_hexaptera_c3 Habenaria_hexaptera_c4 Habenaria_hieronymi Megastylis_gigas_ Pachyplectron_arifolium_ Ponthieva_mandonii Pristiglottis_montana Pterostylis_oliveri_ Sacoila_lanceolata_ Zeuxine_oblonga_ ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M9751] TITLE ITS_Gaps; LINK TAXA = Taxa; DIMENSIONS NCHAR=137; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 ] [ . . . . . . . . . . . . . ] Aa_calceata 000000101?????001??10???????????0?10010100??100100??1000001????0?1110?11000010??010111101101?1111??1000000001000111110?1???????1000010011 Aa_leucantha 000000101?????001??10???????????0?10010100??100100??1000001????0?1110?11000010??010111101101?1111??1000000001000111110?1???????1000010011 Aa_paleacea 000000101?????001??10???????????0?10010100??100100??1000001????0?1110?11000010??010111101101?1111??1000000001000111110?1???????1000010011 Achlydosa_glandulosa_GB1 ?????0100001110011000?1??1001???0?11010100???10100???100?00?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 Achlydosa_glandulosa_GB2 ????00100001110011000?1??1001???0?11010100???10100???100?00?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 Acianthus_tenellus_ 0000001000011110110000000000000?1?????010000000100?????1?00000001110000100000001010111111101?1100001000?100010001011101000001?01000010011 Bipinnula_fimbriata_ 000000100001110011000?1?10001???0?11010100???10100?10000000?10001111000100000001010111101101?11101010000000010001111?10000000101000010011 Bipinnula_montana_ ????00100001110011000?1?100000000?11010100???10100?10000000100001111000100000001010111101101?11101010000000010001111?11000000101000010011 Brachystele_camporum_ 00000010000111001100000???1?????0?11010100??100101????00?00??1001111010100000001010111101111?11100010000000010001111101000000101000010011 Brachystele_dilatata_ 00000010000011001100000???1?????0?11010100??100101????00?00??1001111010100000001010111101111?11100010000000010001111101000000101000010011 Chloraea_alpina ????00100001110011000?1?100001??0?11010100???10100?10000000100001111000100000001010111101101?11101010000000010001111?1100000000100?110011 Chloraea_bidentata 000000100001110011000?1?100001??0101010100???10100?10000000100001111000100000001010111101101?11101010000000010001111?1100000010100?110011 Chloraea_chica_1 ????????????110011000?1?10001???0?11010100???10100?10000000000001111000100000001010111101101?11101010000000010001111????????????????????? Chloraea_chica_2 000000100001110011000?1?10001???0?11010100???10100?10000000000001111000100000001010111101101?11101010000000010001111?11000000101000010001 Chloraea_chrysantha 000000100001110011000?1?100001??0101010100???10100?10000000100001111000100000001010111101101?11101010000000010001111?1100000010100?110011 Chloraea_crispa 000000100001110011000?1?100001??0101010100???10100?10000000100001111000100000001010111101101?11101010000000010001111?1100000010100?110011 Chloraea_cylindrostachya_1 000000100001110011000?1?10001???0?11010100???10100??1000000100001111000101000001010111101101?11101010000000010001111?11000000101000010011 'Chloraea cylindrostachya 2-c1' 000000100001110011000?1?10001???0?11010100???10100??1000000100001111000101000001010111101101?11101010000000010001111?11000000101000010011 'Chloraea cylindrostachya 2-c2' 000000100001110011000?1?10001???0?11010100???10100??1000000100001111000101000001010111101101?11101010000000010001111?11000000101000010011 'Chloraea cylindrostachya 2-c3' 000000100001110011000?1?10001???0?11010100???10100??1000000100001111000101000001010111101101?11101010000000010001111?11000000101000010011 Chloraea_grandiflora 000000100001100011000?1000001???0?11010100???10100?10000000100001111000100000001010110101101?11101010001000010001111?1100000010100?110011 Chloraea_lamellata_ 000000100001110011000?1?100001??0101010100???10100?10000000100001111000100000001010111101101?11101010000000010011111?1100000010100?110011 Chloraea_longipetala ????00100001110011000?1?100001??0101010100???10100?10000000100001111000100000001010111101101?1110101000000001001111?????????????????????? Chloraea_magellanica_GB1 ????00100001100011000?1000001???0?11010100???10100?10000000100001111000100000001010110101101?11101010001000010001111?1100000010100?110011 Chloraea_magellanica_GB2 ?????0100001100011000?1000001???0?11010100???10100?10000000100001111000100000001010110101101?11101010001000010001111?1100000010100?110011 Chloraea_magellanica_c1 000000100001100011000?1000001???0?11010100???10100?10000000100001111000100000001010110101101?11101010001000010001111?1100000010100?110011 Chloraea_magellanica_c2 000000100001100011000?1000001???0?11010100???10100?10000000100001111000100000001010110101101?111010100010001???01111?1100000010100?110011 Chloraea_membranacea ????00100001110010000?1?10001???0?11010?10???10100100000000100001111000100000001010111101101?11101010001000000001101?11000000101000010011 Chloraea_multiflora_ 000000100001110011000?1?100001??0101010100???10100?10000000100001111000100000001010111101101?11101010000000010001111?1100000010100?110011 Chloraea_philippii_B ????00100001110011000?1?100001??0101010100???10100?10000000100001111000100000001010111101101?11101010000000010001111?1100000010100?110011 Chloraea_praecincta_ ??????????01110011000?1100001???0?11010100???10100?10000000100001111000100000001010111101101?11101010000000010001111?10000000101000010011 'Chloraea virescens Ar-c1' 01000010000111001100000?100001??0001010101???10100100000000100001111000100000001010111101101?11101010000000010001111?1100000010100?110011 'Chloraea virescens Ar-c2' 101010100001111011000?1?100001??01010?1100???10100?10000000100001111000100000001010111101101?11101010000000010001111?1100000010100?110011 'Chloraea virescens Ar-c3' 100000000001110000000?1?1000001?0?11000100???10100100000000100000011000100000000010111101101?11101010000000010001111?1100000010100?110011 'Chloraea virescens Ar-c4' 000000100001110011000?1?100001??0101010100???10100?10000000100001111000100000001010111101101?11101010000000010001111?1100000010100?110011 Chloraea_virescens_Ch ????????????????11000?1?100001??0101010100???10100?10000000100001111000100000001010111101101?11101010000000010001111?1100000010100?100011 Chloraea_viridiflora_c1 ??????100001100011000?1000001???0?11010100??100100?10000000100001111000100000001010110101101?11101010001000010001111?1100000010100?110011 Chloraea_viridiflora_c2 000000100001100011000?1000001???0?11010100???10100?10000000100001111000100000001010110101101?11101010001000010001111?1100000010100?110011 Cranichis_apiculata ?????010000111001100010???1?????0?11010100??100100??1000000100001111000100000001010111101101?11100010000000010001111101000000101000010011 Cranichis_ciliata_ 000000101?????001??10???????????0?11010100??100100??1000001????0?1110?11000010??010111101101?1111??1000000001000111110?1???????1000010011 Cranichis_engelii_ 000000101?????001??10???????????0?11010100??100100??1000001????0?1110?11000010??010111101101?1111??1000000001000111110?1???????1000010011 Cranichis_longipetiolata_ 000000101?????001??10???????????0?11010100??100100??1000001????0?1110?11000010??010111101101?1111??1000000001000111110?1???????1000010011 Cyclopogon_elatus 00000010000111001100010???1?????0?11010100??100100??1000000100001111000100000001010111101101?1110001000000001000111110100000010100001001? Cynorkis_compacta_ ????0010000111?11?100?0000000001000?1?0100?1000100????10?00??10011010000000000010?11111011001111010100000000?1001111?1100101??11000010011 Cynorkis_fastigiata 00000010000111?11?100?0000000001000?1?0100?1000100????10?00??10011010000000000010?11111011001011011100000000??101111?1100001??010000?1?11 Cynorkis_galeata ?????010000111?11?100?0000000001000?1?0100?1000100????10?00??10011010000000000010?11111011001111011100000000??101111?1100101??100000?1?11 Cynorkis_grandiflora ?????010000111?11?100?0000000001000?1?0100?1000100????10?00??10011010000000000010?11111011001011011100000000??101111?1100001??110000?1?11 'Gavilea araucana Ar-c1' ????00100001010011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 'Gavilea araucana Ar-c2' 000000100001010011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?1100000010100001??11 'Gavilea araucana Ch-c1' 000000100001110011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 'Gavilea araucana Ch-c2' 000000100001010011000?1?10001???0?11010000???10100?10000000100001111000100000001010111101101?11101010000000010001111?11000000101000010011 'Gavilea araucana Ch-c3' 000000100001010011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 Gavilea_australis_Ar ????00100001110011000?1?10001???0?11010100???10100?10000000000001111000100000001010111101101?11101010000000010001111?11000000101000010001 Gavilea_gladysiae_ 000000100001010011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 Gavilea_glandulifera_ ????00100001110011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111001101?11101010000000010001111?11000000101000010011 Gavilea_littoralis_CH170 000000100001010011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 Gavilea_littoralis_Ch ????00100001010011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 Gavilea_longibracteata_c1 000000100001110011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010111 Gavilea_longibracteata_c2 000000100001110011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010111 Gavilea_longibracteata_c3 ????????????????????????????1???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 Gavilea_lutea_ ????00100101110011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 Gavilea_lutea_GB1 ????00100101110011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010111 Gavilea_lutea_GB2 ?????0100001110011000?1?100001??0101010100???10100?10000000100001111000100000001010111101101?11101010000000010001111?1100000010100?110011 Gavilea_lutea_GB3 ?????0100001110011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 'Gavilea odoratissima Pat-c1' 000000100001010011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 'Gavilea odoratissima Pat-c2' 000000100001010011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?1100000010100001??11 'Gavilea odoratissima Pat-c3' 00?100100001010011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?1100000010100001??11 Gavilea_odoratissima_SV ????00100001010011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 Gavilea_supralabellata_Ar 000000100001110011000?1?100001??0101010100???10100?10000000100001111000100000001010111101101?11101010000000010001111?1100000010100?110011 'Gavilea supralabellata Ch-c1' 000000100001110011000?1?100001??0101010100???10100?10000000100001111000100000001010111101101?11101010000000010001111?1100000010100?110011 'Gavilea supralabellata Ch-c2' 000000100001110011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 'Gavilea supralabellata Ch-c3' 000000100001110011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 Gavilea_trullata ????00100001110011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 Gavilea_venosa_1 ????00100001110011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 Gavilea_venosa_2 ????00100001010011000?1?10001???0?11010000???10100?10000000?10001111000100000001010111101101?11101010000000010001111?11000000101000010011 Geoblasta_penicillata_ 000000100001110011000?1?10001???0?11010100???10100??1000000100001111000100000001010111101101?11101010000000010001111?11000000101000010011 Gonatostylis_vieillardii 000000?10?????001??10???????????0?11010100???10100??1000010???00?1110?11001?00??01011110110011111??11000000010001111?1?1????????100010011 Goodyera_pubescens_ 000000?10?????001??10???????????0?11010100???10100??1000010???00?1110?11000100??01011110110011111??11000000010001111?1?1????????100010011 Goodyera_repens_ 000000?10?????001??10???????????0?11010100???10100??1000010???00?1110?11000100??01011110110011111??11000000010001111?1?1????????100010011 Habenaria_hexaptera_c2 00000010000111?11?100?0000000000000?1?0100?1000100????10?00??10011010000100000010101111011001110011101000000?1001111?1100101??010000?1?10 Habenaria_hexaptera_c3 00000010000111?11?100?0000000000000?1?0100?1000100????10?00??10011010000100000010101111011001110011101000000?1001111?1100101??010000?1?10 Habenaria_hexaptera_c4 00000010000111?11?100?0000000000000?1?0100?1000100????10?00??10011010000100000010101111011001110011101000000?1001111?1100101??010000?1?10 Habenaria_hieronymi ????0010000111?11?100?0000000000000?1?0100?1000100????10?00??10011010000100000010101111011001110011101000000?1001111?1100101??010000?1?10 Megastylis_gigas_ ????0010000111101100000000000001000?1?0100?1000100?10000000??1001101000100000001000111101101?1110001001?000010000011?110001???01000010011 Pachyplectron_arifolium_ 000000?10?????001???1???????????0??0010100?1001000??1000000???10?11?1?01000001??010111100101?1111??00000000010001111?1?1???????1001010011 Ponthieva_mandonii 00000010001111001100010???1?????0?11010100??100100??1000000100001111000100000001010011101101?11100010000010010001111101010000101000010011 Pristiglottis_montana ??????????????00110001000001????0?11010100?1000100000000100??100111100010000001?010111101100111101011000001010001111?1100000010??1?010011 Pterostylis_oliveri_ 000000?10?????001??10???????????0?1101010010000100?10000000????1?1110?11001?00??010111101101?1011??10000000010001111?1?1???????1000010011 Sacoila_lanceolata_ ?????010000111001100010???1?????0?11010100??100110???000000100001110000100000001010101101111?11100010000000010001111101000000101000010011 Zeuxine_oblonga_ ????0010000111001100010???1?????0001010100???10100000000000?10001111000100000001010111101000001101011000001010001111?1100000010?100010011 ; END;