#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 18, 2025; 23:03 GMT

TreeBASE (cc) 1994-2008

Study reference:
Weichselbaumer M., Willmann M., Reifinger M., Singer J., Bajna E., Sobanov Y., Mechtcherikova
D., Selzer E., Thalhammer J.G., Kammerer R., & Jensen-jarolim E. 2011.
Phylogenetic discordance of human and canine carcinoembryonic antigen (CEA,
CEACAM) families, but striking identity of the CEA receptors will impact comparative
oncology studies. PLoS Currents: Tree of Life., 16(3): RRN1223.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S12028]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=13;
        TAXLABELS
            Canis_familiaris_CEACAM1
            Canis_familiaris_CEACAM19
            Canis_familiaris_CEACAM23
            Canis_familiaris_CEACAM24
            Canis_familiaris_CEACAM25
            Canis_familiaris_CEACAM28
            Canis_familiaris_CEACAM29
            Canis_familiaris_CEACAM30
            Homo_sapiens_CEACAM1
            Homo_sapiens_CEACAM19
            Homo_sapiens_CEACAM3
            Homo_sapiens_CEACAM5
            Homo_sapiens_CEACAM6
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M10609]

	TITLE Comparison_of_dog_and_human_CEACAMs;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=330;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                     10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330]
[                                      .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
Canis_familiaris_CEACAM1      CAAGTCACTGTGGAGTCCGTGCCTCCCAATGCTGCTGAAGGGA--AGGACGCTCTTCTGCGGGTCCTCAATCTGCCTGGGGATACAGCAAGCCTTACCTGGTTCAAAGGGGAAACTGTATTGCCGACCCATAAAATTCTATTATATGTAATAGACACCAAAATCACTACCCCGGG-GCCTGCATACAGCGGCAGAGAGACAATATA-----CCCCAACGGATCCCTGCTATTCCAGAACATCACCCTGAACGACACTGGATCCTACATCCTACAAATCATAAACCAAAAATTTGAAACTGCACTAGTACGTGGACAGCTCCAAGTATTC-
Canis_familiaris_CEACAM19     CTGCCCTACGCATCCAGAAGATTCCAGAGTATCCTCAAAAAGACCAGGACCTTCTCCTGTCTGTCCAGGGCATCCCAGGCAACTTTCAGGACTTCAACTGGTACCTGGGGGAGGAGACCAATGGTGGCACGATGTTATTCACCTACTTCCCCGATCTCCAGTGGCCCCAGAGGGACGGCAGTGCCATGGGACAGCATGACATCGTTGGCTTCCCCAATGGCTCCATGATGCTGCATCGTGTCCAGCCCACCGACAGTGGCACCTACCAGGTAGCTGTCAACATCAATCCTGCCTGGATCATGAGGGCCAAGACTGAGGTCCAGGTGGCCG
Canis_familiaris_CEACAM23     CAAGTCACTGTGGAATCCGTGCCTCCCAATGCTGCTGAAGGGA--AGGACGCTCTTCTGCGGGTCCTCAATTTGCCTGGGGATACAGCAGGCCTTACCTGGTTCAGAGGGGAAATTGTAGCACCTGTCCATCAAATTGTATTATATGTAGTAGACACACGAGTAATTACCCCGGG-GCCTGCACACAGTGGCAGAGAGATAATATA-----CCCCAATGGATCCCTGCTGTTCCAGAACATCACCCTGAGCGACACTGGATCCTACATCCTACAAATCATAAACAGAAAATTTGAAACTGCACTAGTAACTGGAGAGCTCCGAGTATTC-
Canis_familiaris_CEACAM24     CAAGTCACTGTGGAATCCGTGCCTCCCAATGCTGCTGAAGGGA--AGGACGCTCTTCTGCGGGTCCTCAATCTGCCTGGGGATACAGCAGGCCTTACCTGGTTCAGAGGGGAAATTGTAGCACCTGTCCATCAAATTGTATTATATGTAGTAGACACACGAGTAATTGTCCCGGG-GCCTGCATACAGTGGCAGAGAGATAATATA-----CCCCAATGGATCCCTGCTGTTCCAGAATATCACCCTGAAAGACACTGGATCCTACATCCTACAAATCATAAACCAAAAATTTGAAACTGCACTAGTACCTGGACAGCTCCGAGTATTC-
Canis_familiaris_CEACAM25     CAAGTCACTGTGGAGTCGGTGCCTCCCAATGCTGCTGAAGGGA--AGGACGTTCTTCTGCGAGTCCTCAATCTGCCTGGGGATCTTCTAGGATATGCCTGGTTCAGAGGGAAAAGTGTAGAGACCAATAATCGTATTGTGTCATATGTGGTAAACACACAAGTGATTACCCCCGG-GCATGCACACAGCGGCAGAGAGACAGCATA-----CCCCAATGGATCCTTGCTGTTTCAGAACATCACCCTGAAGGACACGGGGTACTACACCCTACAAATCATTACAAATGATGTTCAAGTTGAACAAGTACGTGGACAGCTCCGAGTATTC-
Canis_familiaris_CEACAM28     CAAGTCACTGTGGAGTCCGTGCCTCCCAATGCTGCTGAAGGGA--AGGATGCTCTTCTGCGGGTCCTCAATCTGCCTGGGGATACAGCAAGCCTTACCTGGTTCAAAGGGGAAACTGTATTGCCGACCCATAAAATTCTATTATATGTAATAGACACCAAAATCACTAACCCGGG-GCCTGCATACAGCGGCAGAGAGACAATATA-----CCCCAACGGATCCCTGCTGTTCCAGAACATCACCCTGAACGACACTGGATCCTACATCCTACAAATCATAAACCAAAAATTTGAAACTGCACTAATACGGGGACAGCTCCAAGTATTC-
Canis_familiaris_CEACAM29     CAAGTCACTGTGGAGTCCGTGCCTCCCAATGCTGCTGAAGGGA--AGGATGCTCTTCTGCGGGTCCTCAATCTGCCTGGGGATACAGCAGGCCTTACCTGGTTCAGAGGGGAAACTGTATTGCCGACCCATAAAATTCTATTATATGTAATAGACACCAAAGTCACTACCCCGGG-GCCTGCATACAGCCACAGAGAGACAATATA-----CCCCAATGGATCCCTGCTGTTCCAGAACATCACCGTGAATAATGCCGGATATTACATCCTACAAATCATAAACAGAAAATTTGAAACTGCACTAGTACCTGGACAGCTCCGAGTATTC-
Canis_familiaris_CEACAM30     CAAGTCACTGTGGAGTCTGTGCCTCCCAATGCTGCTGAAGGGA--AGGATGCTCTTCTGCGGGTCCTCAATCTGCCTGGGGATACAGCAAGCCTTACCTGGTTCAGAGGGGAAACTGCATTGCCGACCCATAAAATTCTATTATATGTAATAGACACCAAAGTCACTACCCCGGG-GCCTGCATACAGCGGCAGAGAGACAATATA-----CCCCAACGGATCCCTGCTGTTCCAGAACATCACCCTGAATGATGCCGGATCCCACATCCTACAAATCATAAACCAAAAATTTGAAACTGCACTAATACGGGGACAGCTCCGAGTATTC-
Homo_sapiens_CEACAM1          CAGCTCACTACTGAATCCATGCCATTCAATGTTGCAGAGGGGA--AGGAGGTTCTTCTCCTTGTCCACAATCTGCCCCAGCAACTTTTTGGCTACAGCTGGTACAAAGGGGAAAGAGTGGATGGCAACCGTCAAATTGTAGGATATGCAATAGGAACTCAACAAGCTACCCCAGG-GCCCGCAAACAGCGGTCGAGAGACAATATA-----CCCCAATGCATCCCTGCTGATCCAGAACGTCACCCAGAATGACACAGGATTCTACACCCTACAAGTCATAAAGTCAGATCTTGTGAATGAAGAAGCAACTGGACAGTTCCATGTATAC-
Homo_sapiens_CEACAM19         CAGCTCTCTACATCCAGAAGATTCCAGAGCAGCCTCAAAAGAACCAGGACCTTCTCCTGTCAGTCCAGGGTGTCCCAGACACCTTCCAGGACTTCAACTGGTACCTGGGGGAGGAGACGTACGGAGGCACGAGGCTATTTACCTACATCCCTGGGATACAACGGCCTCAGAGGGATGGCAGTGCCATGGGACAGCGAGACATCGTGGGCTTCCCCAATGGTTCCATGCTGCTGCGCCGCGCCCAGCCTACAGACAGTGGCACCTACCAAGTAGCCATTACCATCAACTCTGAATGGACTATGAAGGCCAAGACTGAGGTCCAGGTAGCTG
Homo_sapiens_CEACAM3          AAGCTCACTATTGAATCCATGCCGCTCAGTGTCGCAGAGGGGA--AGGAGGTGCTTCTACTTGTCCACAATCTGCCCCAGCATCTTTTTGGCTACAGCTGGTACAAAGGGGAAAGAGTGGATGGCAACAGTCTAATTGTAGGATATGTAATAGGAACTCAACAAGCTACCCCAGG-GGCCGCATACAGCGGTCGAGAGACAATATA-----CACCAATGCATCCCTGCTGATCCAGAATGTCACCCAGAATGACATAGGATTCTACACCCTACAAGTCATAAAGTCAGATCTTGTGAATGAAGAAGCAACTGGACAGTTCCATGTATAC-
Homo_sapiens_CEACAM5          AAGCTCACTATTGAATCCACGCCGTTCAATGTCGCAGAGGGGA--AGGAGGTGCTTCTACTTGTCCACAATCTGCCCCAGCATCTTTTTGGCTACAGCTGGTACAAAGGTGAAAGAGTGGATGGCAACCGTCAAATTATAGGATATGTAATAGGAACTCAACAAGCTACCCCAGG-GCCCGCATACAGTGGTCGAGAGATAATATA-----CCCCAATGCATCCCTGCTGATCCAGAACATCATCCAGAATGACACAGGATTCTACACCCTACACGTCATAAAGTCAGATCTTGTGAATGAAGAAGCAACTGGCCAGTTCCGGGTATAC-
Homo_sapiens_CEACAM6          AAGCTCACTATTGAATCCACGCCGTTCAATGTCGCAGAGGGGA--AGGAGGTTCTTCTACTCGCCCACAACCTGCCCCAGAATCGTATTGGTTACAGCTGGTACAAAGGCGAAAGAGTGGATGGCAACAGTCTAATTGTAGGATATGTAATAGGAACTCAACAAGCTACCCCAGG-GCCCGCATACAGTGGTCGAGAGACAATATA-----CCCCAATGCATCCCTGCTGATCCAGAACGTCACCCAGAATGACACAGGATTCTATACCCTACAAGTCATAAAGTCAGATCTTGTGAATGAAGAAGCAACCGGACAGTTCCATGTATAC-
;
END;