#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 22:47 GMT TreeBASE (cc) 1994-2008 Study reference: Fuentes-bazan S., Mansion G., & Borsch T. 2012. Towards a species level tree of the globally diverse genus Chenopodium (Chenopodiaceae). Molecular Phylogenetics and Evolution, 62(1): 359-374. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12369] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=141; TAXLABELS Allenrolfea_vaginata Atriplex_hortensis_AC516_ESTONIA Atriplex_nitens_AC573_GERMANY Atriplex_patula_AC605_GERMANY Atriplex_sagittata_AC533_GERMANY Axyris_amaranthoides_AC647_RUSSIA Axyris_hybrida_AC648_RUSSIA Axyris_prostrata_AC529_RUSSIA Bassia_laniflora_AC534b_GERMANY Beta_vulgaris_AC530_DENMARK Ceratocarpus_arenarius_AC531_ROMANIA Ceratocarpus_arenarius_AC649_RUSSIA Chenopodium_album_AC388_GERMANY Chenopodium_album_AC395_USA Chenopodium_album_AC396_USA Chenopodium_album_AC414_SPAIN Chenopodium_album_AC427_SPAIN Chenopodium_album_AC571_GREECE Chenopodium_album_AC575_RUSSIA Chenopodium_album_AC590_USA Chenopodium_album_AC591_USA Chenopodium_album_AC602_GERMANY Chenopodium_album_AC614_RUSSIA Chenopodium_ambrosioides_AC386_ETHIOPIA Chenopodium_ambrosioides_AC420_BOLIVIA Chenopodium_ambrosioides_AC425_BOLIVIA Chenopodium_ambrosioides_AC527_ITALY Chenopodium_aristatum_AC528_GERMANY Chenopodium_aristatum_AC610_RUSSIA Chenopodium_aristatum_AC654_MONGOLIA Chenopodium_atrovirens_AC363_BOLIVIA Chenopodium_atrovirens_AC421_BOLIVIA Chenopodium_atrovirens_AC540_USA Chenopodium_atrovirens_AC586_USA Chenopodium_berlandieri_AC541_USA Chenopodium_berlandieri_AC599_USA Chenopodium_berlandieri_subsp_nuttalliae_AC616_MEXICO Chenopodium_berlandieri_var_boscianum_AC545_USA Chenopodium_berlandieri_var_zschackei_AC542_USA Chenopodium_berlandieri_var_zschackei_AC600_USA 'Chenopodium bonus-henricus AC381 AUSTRIA' Chenopodium_californicum_AC431_USA Chenopodium_capitatum_AC391_GERMANY Chenopodium_capitatum_var_parvicapitatum_AC547_USA Chenopodium_chenopodioides_AC543_USA Chenopodium_coronopus_AC570_SPAIN Chenopodium_cycloides_AC384_USA Chenopodium_cycloides_AC544_USA Chenopodium_desertorum_subsp_anidiophyllum_AC519_AUSTRALIA Chenopodium_desiccatum_AC588_USA Chenopodium_ficifolium_AC854_GERMANY Chenopodium_foliosum_AC392_GERMANY Chenopodium_foliosum_AC520_KIRGISTAN Chenopodium_fremontii_AC579_USA Chenopodium_fremontii_AC597_USA Chenopodium_giganteum_AC428_INDIA Chenopodium_gigantospermum_var_standleyanum_AC550_USA Chenopodium_glaucum_AC417_SPAIN Chenopodium_glaucum_AC652_USA Chenopodium_graveolens_AC419_BOLIVIA Chenopodium_hians_AC551_USA Chenopodium_hybridum_AC380_GERMANY Chenopodium_hybridum_AC521_GERMANY Chenopodium_hybridum_AC609_RUSSIA Chenopodium_iljinii_AC611_RUSSIA Chenopodium_iljinii_AC613_RUSSIA Chenopodium_incanum_AC553_USA Chenopodium_leptophyllum_AC554_USA Chenopodium_melanocarpum_AC429_AUSTRALIA Chenopodium_multifidum_AC574_GREECE Chenopodium_murale_AC360_BOLIVIA Chenopodium_murale_AC382_MEXICO Chenopodium_murale_AC383_CHILE Chenopodium_murale_AC397_USA Chenopodium_murale_AC409_SLOVAKIA Chenopodium_murale_AC413_SPAIN Chenopodium_murale_AC415_SPAIN Chenopodium_murale_AC424_BOLIVIA Chenopodium_murale_AC430_GREECE Chenopodium_murale_AC565_GREECE Chenopodium_murale_AC566_GREECE Chenopodium_murale_AC581_USA Chenopodium_murale_AC587_USA Chenopodium_murale_AC589_USA Chenopodium_neomexicanum_AC555_USA Chenopodium_neomexicanum_AC598_USA Chenopodium_nevadense_AC556_USA Chenopodium_opulifolium_AC410_SLOVAKIA Chenopodium_opulifolium_AC416_SPAIN Chenopodium_pallescens_AC557_USA Chenopodium_pallescens_AC594_USA Chenopodium_pallidicaule_AC398_BOLIVIA Chenopodium_pallidicaule_AC399_PERU Chenopodium_pallidicaule_AC400_PERU Chenopodium_pallidicaule_AC426_BOLIVIA Chenopodium_petiolare_AC359_BOLIVIA Chenopodium_petiolare_AC423_BOLIVIA Chenopodium_pratericola_AC558_USA Chenopodium_pumilio_AC524_AUSTRALIA Chenopodium_pumilio_AC604_GREECE Chenopodium_pumilio_AC615_MEXICO Chenopodium_quinoa_AC394_MEXICO Chenopodium_quinoa_AC401_BOLIVIA Chenopodium_quinoa_AC402_ECUADOR Chenopodium_quinoa_AC403_MEXICO Chenopodium_quinoa_AC404_PERU Chenopodium_quinoa_AC405_ARGENTINA Chenopodium_quinoa_AC406_PERU Chenopodium_quinoa_AC407_CHILE Chenopodium_quinoa_AC408_BOLIVIA Chenopodium_rubrum_AC385_USA Chenopodium_rubrum_AC411_GERMANY Chenopodium_rubrum_AC564_GERMANY Chenopodium_rubrum_AC653_POLAND Chenopodium_schraderianum_AC387_ETHIOPIA Chenopodium_standleyanum_AC595_USA Chenopodium_standleyanum_AC596_USA Chenopodium_subglabrum_AC559_USA Chenopodium_urbicum_AC536_GREECE Chenopodium_urbicum_AC576_GREECE Chenopodium_vulvaria_AC412_SPAIN Chenopodium_vulvaria_AC562_GREECE Chenopodium_watsonii_AC561_USA Einadia_nutans_AC525_AUSTRALIA Grayia_spinosa_AC625_USA Hablitzia_tamnoides Hablitzia_tamnoides_AC523_GERMANY Kochia_densiflora_AC607_RUSSIA Kochia_prostrata_AC606_RUSSIA Krascheninnikovia_ceratoides_AC532_RUSSIA Krascheninnikovia_ceratoides_AC608_RUSSIA Krascheninnikovia_lanata_AC626_USA Microgynoecium_tibeticum_AC656_CHINA Monolepis_nuttalliana_AC621_USA Rhagodia_triandra_AC522_NEW_ZEALAND Spinacia_oleracea Spinacia_tetrandra_AC650_ASIA Spinacia_turkestanica_AC651_ASIA Stutzia_dioica_AC351_USA Suckleya_suckleyana_AC350_USA Zuckia_brandegeei_AC627_USA ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M11545] TITLE 'Chenopodium trnL-F Indels'; LINK TAXA = Taxa; DIMENSIONS NCHAR=162; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 ] [ . . . . . . . . . . . . . . . . ] Allenrolfea_vaginata 0101?????1????0001011101110010000001?110001??001000001001101?01??10?1?1??????10001001000000?1?0100100000001101111???10?????0010001?????1????0101?1?1?100001?000000 Atriplex_hortensis_AC516_ESTONIA 0101?1000000110100011001110100???1????????????????????????????????????001001110101001001000?1?0100100010???101111???10?????0010001??100000010101?1?1?1001?010001?? Atriplex_nitens_AC573_GERMANY 0101?1000000110100011001110100???1????????????????????????????????????001001110101001001000?1?0100100010???101111???10?????0010001??100000010101?1?1?1001?010001?? Atriplex_patula_AC605_GERMANY 0101?1000000110100011001110100???1????????????????????????????????????001001110101001001000?1?0100100010???101111???10?????0010001??100000010101?1?1?1001?010001?? Atriplex_sagittata_AC533_GERMANY 0101?1000000110100011001110100???1????????????????????????????????????001001110101001001000?1?0100100010???101111???10?????0010001??100000010101?1?1?1001?010001?? Axyris_amaranthoides_AC647_RUSSIA 0101?1000000110100011001110100000001?1100000001?1??00?000101?01??10?1?001001100101001000000?1?0100100010???101110110000?1??0010001?????1????0101?1?1?1001?010000?1 Axyris_hybrida_AC648_RUSSIA 0101?1000000110100011001110100000001?1100000001?1??00?000101?01??10?1?001001100101001000000?1?0100100010???101110110000?1??0010001?????1????0101?1?1?1001?010000?1 Axyris_prostrata_AC529_RUSSIA 0101?1000000110100011001110100000001?1100000001?1??00?000101?01??10?1?001001100101001000000?1?0100100010???101110110000?1??0010001?????1????0101?1?1?1001?010000?1 Bassia_laniflora_AC534b_GERMANY 011??????1????001??1100111000000000001101????00101?00?01??00001??00?1?00?1?1111?01001000000?1?0100100100?1?001111???10?????0010001?????1????0101?1100100001?0010?1 Beta_vulgaris_AC530_DENMARK 0101?1000000110100011001110010000001?110000?100101?00?001101?01??11?1?001001111?01001000000?1?010011????????01111?00001????00??1????????????0101?1?1?000001?0000?1 Ceratocarpus_arenarius_AC531_ROMANIA 0101?10000000101001110011001001000???????????0????????????01?01??10?1?001001100101101000100?1?01000000?1????010101?1000?000001001???????????0101?1?1?1001?010000?1 Ceratocarpus_arenarius_AC649_RUSSIA 0101?1000000010100111001100100?100???????????0????????????01?01??10?1?001001100101101000100?1?01000000?1????010101?1000?000001001???????????0101?1?1?1001?010000?1 Chenopodium_album_AC388_GERMANY 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_album_AC395_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_album_AC396_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_album_AC414_SPAIN 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_album_AC427_SPAIN 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_album_AC571_GREECE 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_album_AC575_RUSSIA 0101?10000001101000110011101000000001110000001???????????????001?10?1?001001110001001001000?1?0100100000000111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_album_AC590_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_album_AC591_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_album_AC602_GERMANY 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_album_AC614_RUSSIA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_ambrosioides_AC386_ETHIOPIA 0101?1000000110101011001111??????0???????????????????????????????10?1?001001110101001000000?1?0100101??0???101111??1000?0001010001?????1????0101?1?1?10001010000?1 Chenopodium_ambrosioides_AC420_BOLIVIA 0101?1000000110101011001111??????0???????????????????????????????10?1?001001110101001000000?1?0100101??0???101111??1000?0001010001?????1????0101?1?1?10001010000?1 Chenopodium_ambrosioides_AC425_BOLIVIA 0101?1000000110101011001111??????0???????????????????????????????10?1?001001110101001000000?1?0100101??0???101111??1000?0001010001????1000000101?1?1?1001?010000?1 Chenopodium_ambrosioides_AC527_ITALY 0101?1000000110101011001111??????0???????????????????????????????10?1?001001110101001000000?1?0100101??0???101111??1000?0001010001?????1????0101?1?1?10001010000?1 Chenopodium_aristatum_AC528_GERMANY 0101?1000000110100011001111??????0???????????????????????????????10?1?0010011100010010000000010100101??0???101111???10?????0000001?10000001?0101?1?1?1001?010000?1 Chenopodium_aristatum_AC610_RUSSIA 0101?1000000110100011001111??????0???????????????????????????????10?1?0010011100010010000000010100101??0???101111???10?????0000001?10000001?0101?1?1?1001?010000?1 Chenopodium_aristatum_AC654_MONGOLIA 0101?1000000110100011001111??????0???????????????????????????????10?1?0010011100010010000000010100101??0???101111???10?????0000001?10000001?0101?1?1?1001?010000?1 Chenopodium_atrovirens_AC363_BOLIVIA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_atrovirens_AC421_BOLIVIA 0001?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_atrovirens_AC540_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_atrovirens_AC586_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001000001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_berlandieri_AC541_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_berlandieri_AC599_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_berlandieri_subsp_nuttalliae_AC616_MEXICO 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_berlandieri_var_boscianum_AC545_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_berlandieri_var_zschackei_AC542_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_berlandieri_var_zschackei_AC600_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 'Chenopodium bonus-henricus AC381 AUSTRIA' 0101???100?0?10100011000110100000001?1100001001000001??0?101?01??10001001001110001001000000?1?0100100010???101111???10?????0010001?????1????0101?0?1?1001?010100?1 Chenopodium_californicum_AC431_USA 0101???100?0?10100011000110100000001?1100001001000001??0?101?01??10001001001110001001000000?1?0110100010???101111???10?????0010001?????1????0001?1?1?1101?010100?1 Chenopodium_capitatum_AC391_GERMANY 0101???100?0?10100011000110100000001?1100001001000001??0?101?01??10001001001110001001000000?1?0100100010???101111???10?????0010001?????1????0001?0?1?1101?011??0?1 Chenopodium_capitatum_var_parvicapitatum_AC547_USA 0101???100?0?10100011000110100000001?1100001001000100010?001?01??10001001001110001001000000?1?0100100010???101111???10?????0010001?????1????0001?0?1?1101?01?????? Chenopodium_chenopodioides_AC543_USA 01001100000011010001101??10100000001?111?????0????????????1??000110?1?001001110001001001000?1?1?00100010???101111????1?????0010001?????1????0101?10011001?01000010 Chenopodium_coronopus_AC570_SPAIN 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_cycloides_AC384_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_cycloides_AC544_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_desertorum_subsp_anidiophyllum_AC519_AUSTRALIA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???010001?1?1001?010000?1 Chenopodium_desiccatum_AC588_USA 0101?1000000110101011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_ficifolium_AC854_GERMANY 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_foliosum_AC392_GERMANY 0101???100?0?10100011000110100000001?0100001001000001??0?101?01??100010010011100010010000001000100100010???101111???10?????0010001?????1????0001?0?1?1101?010100?1 Chenopodium_foliosum_AC520_KIRGISTAN 0101???100?0?10100011000110100000001?0100001001000001??0?101?01??100010010011100010010000001000100100010???101111???10?????0010001?????1????0001?0?1?1101?010100?1 Chenopodium_fremontii_AC579_USA 0101?1000000110101011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_fremontii_AC597_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_giganteum_AC428_INDIA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_gigantospermum_var_standleyanum_AC550_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_glaucum_AC417_SPAIN 0101?100000011010001101??10100000001?111?????0????????????1??000110?1?001001110001001001000?1?1?00100000?1?10111001000000010010001?????1????0111?10011001?010000?1 Chenopodium_glaucum_AC652_USA 0101?100000011010001101??10100000001?111?????0????????????1??000110?1?001001110001001001000?1?1?00100000?1?10111001000000010010001?????1????0111?10011001?010000?1 Chenopodium_graveolens_AC419_BOLIVIA 0101?1000000110100011001111??????0???????????????????????????????10?1?001001110101001000001???0?00101??0???100111??1000?00010?101???????????0101?1?1?1001?010000?1 Chenopodium_hians_AC551_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000100111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_hybridum_AC380_GERMANY 0101?1000000100100011001110100000001?100000001???????????????001?10?1?001001110101001001000?1?0100100000?1?101111?10000001?0010000?????1????0101?1?1?1001?010000?1 Chenopodium_hybridum_AC521_GERMANY 0101?1000000100100011001110100000001?100000001???????????????001?10?1?001001110101001001000?1?0100100000?1?101111?10000001?0010000?????1????0101?1?1?1001?010000?1 Chenopodium_hybridum_AC609_RUSSIA 0101?1000000100100011001110100000001?100000001???????????????001?10?1?001001110101001001000?1?0100100000?1?101111?10000001?0010000?????1????0101?1?1?1001?010000?1 Chenopodium_iljinii_AC611_RUSSIA 0101?10000001101000110011101000000001110000001???????????????001?10?1?001001110001001001000?1?0100100000000111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_iljinii_AC613_RUSSIA 0101?10000001101000110011101000000001110000001???????????????001?10?1?001001110001001001000?1?0100100000000111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_incanum_AC553_USA 0101?1000000110101011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_leptophyllum_AC554_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_melanocarpum_AC429_AUSTRALIA 0101?1000001??0101011001111??????0???????????????????????????????10?1?001001110101001000000?1?0101?01??0???101111??1000?0001010001?????1????0101?1?1?1001?010000?1 Chenopodium_multifidum_AC574_GREECE 0101?1000000110101011001111??????0???????????????????????????????10?1?001001110101001000000?1?0100101??0???101111??1000?0001010001?????1????0101?1?1?1001?010000?1 Chenopodium_murale_AC360_BOLIVIA 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_murale_AC382_MEXICO 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_murale_AC383_CHILE 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_murale_AC397_USA 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_murale_AC409_SLOVAKIA 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_murale_AC413_SPAIN 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_murale_AC415_SPAIN 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_murale_AC424_BOLIVIA 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_murale_AC430_GREECE 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_murale_AC565_GREECE 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_murale_AC566_GREECE 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_murale_AC581_USA 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_murale_AC587_USA 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_murale_AC589_USA 0101?0000010?10100011001110100000001?110000001???????????????100010?1?001001110001001001000?1?0100100000?1?101111???10?????0010001?????1????0101?1?1?1001?000000?1 Chenopodium_neomexicanum_AC555_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_neomexicanum_AC598_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_nevadense_AC556_USA 0101?1000000110101011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_opulifolium_AC410_SLOVAKIA 0101?10000001101000110011101000000001110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_opulifolium_AC416_SPAIN 0101?10000001101000110011101000000001110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_pallescens_AC557_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_pallescens_AC594_USA 0101?1000000110101011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_pallidicaule_AC398_BOLIVIA 0101?100000011010001100111010000001??110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_pallidicaule_AC399_PERU 0101?100000011010001100111010000001??110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_pallidicaule_AC400_PERU 0101?100000011010001100111010000001??110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_pallidicaule_AC426_BOLIVIA 0101?100000011010001100111010000001??110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_petiolare_AC359_BOLIVIA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?00100111000100101????????????????????????????????????????????????????????1?1?1?1001?010000?1 Chenopodium_petiolare_AC423_BOLIVIA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_pratericola_AC558_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_pumilio_AC524_AUSTRALIA 0101?1000000110101011001111??????0???????????????????????????????10?1?001001110101001000000?1?0101?01??0???101111??1000?0001010001?????1????0101?1?1?1001?010000?1 Chenopodium_pumilio_AC604_GREECE 0101?1000000110101011001111??????0???????????????????????????????10?1?001001110101001000000?1?0101?01??0???101111??1000?0001010001?????1????0101?1?1?1001?010000?1 Chenopodium_pumilio_AC615_MEXICO 0101?1000000110101011001111??????0???????????????????????????????10?1?001001110101001000000?1?0101?01??0???101111??1000?0001010001?????1????0101?1?1?1001?010000?1 Chenopodium_quinoa_AC394_MEXICO 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_quinoa_AC401_BOLIVIA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_quinoa_AC402_ECUADOR 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_quinoa_AC403_MEXICO 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_quinoa_AC404_PERU 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_quinoa_AC405_ARGENTINA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_quinoa_AC406_PERU 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_quinoa_AC407_CHILE 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?01000??? Chenopodium_quinoa_AC408_BOLIVIA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_rubrum_AC385_USA 0101?100000011010001101??10100000001?111?????0????????????1??000110?1?000011110001001001000?1?1?00100000?1?10111001000000010010001?????1????0111?10011001?010000?1 Chenopodium_rubrum_AC411_GERMANY 0101?100000011010001101??10100000001?111?????0????????????1??000110?1?001001110001001001000?1?1?00100000?1?10111001000000010010001?????1????0111?10011001?010000?1 Chenopodium_rubrum_AC564_GERMANY 0101?100000011010001101??10100000001?111?????0????????????1??000110?1?001001110001001001000?1?1?00100000?1?10111001000000010010001?????1????0111?10011001?010000?1 Chenopodium_rubrum_AC653_POLAND 0101?100000011010001101??10100000001?111?????0????????????1??000110?1?001001110001001001000?1?1?00100000?1?10111001000000010010001?????1????0111?10011001?010000?1 Chenopodium_schraderianum_AC387_ETHIOPIA 0101?1000000110101011001111??????0???????????????????????????????10?1?001001110101001000000?1?0101?01??0???101111??1000?0001010001?????1????0101?1?1?1001?010000?1 Chenopodium_standleyanum_AC595_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_standleyanum_AC596_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_subglabrum_AC559_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_urbicum_AC536_GREECE 0101?100000011010001101??10100000001?111?????0????????????1??000110?1?001001110001?1?00??00?1?1?00100000?1?101111?1000000010010001?????1????0101?10011001?010000?1 Chenopodium_urbicum_AC576_GREECE 0101?100000011010001101??10100000001?111?????0????????????1??000110?1?001001110001?1?00??00?1?1?00100000?1?101111?1000000010010001?????1????0101?10011001?010000?1 Chenopodium_vulvaria_AC412_SPAIN 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_vulvaria_AC562_GREECE 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Chenopodium_watsonii_AC561_USA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???0101?1?1?1001?010000?1 Einadia_nutans_AC525_AUSTRALIA 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111101???10?????00100010000001???010011?1?1001?010000?1 Grayia_spinosa_AC625_USA 0101?1000000110100011001110100???1????????????????????????????????????001001110000001001000?1?0100100010???101111???10?????0010001??100000010101?1?1?1001?010001?? Hablitzia_tamnoides 01000???10?0?101000110011100010000???110001??00101?00?001101?01??10?1?01???111001?001000000?1?0100000000?1?101111???10?????001000110000001??1?01?1?1?100001?0000?1 Hablitzia_tamnoides_AC523_GERMANY 01000???10?0?101000110011100010000???110001??00101?00?001101?01??10?1?01???111001?001000000?1?0100000000?1?101111???10?????001000110000001??1?01?1?1?100001?0000?1 Kochia_densiflora_AC607_RUSSIA 011??????1????001??1100111000000000001101????00101?00?01??00101??00?1?00?1?1111?01001000000?1?0100100010???001111???10?????0010001?????1????0101?1100100001?0010?1 Kochia_prostrata_AC606_RUSSIA 011????100?0?1001??1100101000000000001101????00101?00?01??01?01??1010000?1?1111?01001000000?1?0100100010???001111???10?????0010001?????1????0101?1100100001?0010?1 Krascheninnikovia_ceratoides_AC532_RUSSIA 01000?100000010100001001110100000001?1100100000?1??00?000101?01??10?1?001001100101001000000?1?0100000010???10101011000010000010001?????1????0101?1?1?101??010000?1 Krascheninnikovia_ceratoides_AC608_RUSSIA 01000?100000010100001001110100000001?1100100000?1??00?000101?01??10?1?001001100101001000000?1?0100000010???10101011000010000010001?????1????0101?1?1?101??010000?1 Krascheninnikovia_lanata_AC626_USA 01000?100000010100001001110100000001?1100100000?1??00?000101?01??10?1?001001100101001000000?1?0100000010???10101011000010000010001?????1????0101?1?1?101??010000?1 Microgynoecium_tibeticum_AC656_CHINA 1101?1000000110100010001110100??10???????????????????????????????10?1?001001110101001001000?1?0100100000?1?101111???10?????0010001??100000010101?1?1?1001?010001?? Monolepis_nuttalliana_AC621_USA 0101???100?0?10100011000110100000001?1100001001000?1??????01?01??10001001001110001001000000?1?0100100010???101111???10?????0010001???10000000001?0?1?1101?010100?1 Rhagodia_triandra_AC522_NEW_ZEALAND 0101?1000000110100011001110100000001?110000001???????????????001?10?1?001001110001001001000?1?0100100000?1?111111???10?????00100010000001???010011?1?1001?010000?1 Spinacia_oleracea 0101???100?0?11??????????????????0????????????????????????????????0?1?00100001000100100001???????0?00010???101111???10?????0010001?????1????0101?1?1?1001?010000?1 Spinacia_tetrandra_AC650_ASIA 0101???100?0?11??????????????????0????????????????????????????????0?1?00100001000100100001???????0?00010???101111???10?????0010001?????1????0101?1?1?1001?010000?1 Spinacia_turkestanica_AC651_ASIA 0101???100?0?11??????????????????0????????????????????????????????0?1?00100001000100100001???????0?00010???101111???10?????0010001?????1????0101?1?1?1001?010000?1 Stutzia_dioica_AC351_USA 0101?1000000110100011001110100???1????????????????????????????????????0010011100010011?????????????????????????????????????????????????????????????1?1001?010001?? Suckleya_suckleyana_AC350_USA 0101?1000001??0101011001111??????0???????????????????????????????10?1?001001110101001000000?1?0100101??0???101111??1000?00011??00??????1????0101?1?1?1001?010000?1 Zuckia_brandegeei_AC627_USA 0101?1000000110100011001110100???1????????????????????????????????????001001110000001001000?1?0100100010???101111???10?????0010001??100000010101?1?1?1001?010001?? ; END; BEGIN SETS; CHARSET HS2_sapcer (CHARACTERS = 'Chenopodium trnL-F Indels') = 1; CHARSET HS1_Spacer (CHARACTERS = 'Chenopodium trnL-F Indels') = 1; CHARSET HS1 (CHARACTERS = 'Chenopodium trnL-F Indels') = 1; CHARSET HS2 (CHARACTERS = 'Chenopodium trnL-F Indels') = 1; CHARSET spacer (CHARACTERS = 'Chenopodium trnL-F Indels') = 1; CHARSET HS3 (CHARACTERS = 'Chenopodium trnL-F Indels') = 1; CHARSET intron (CHARACTERS = 'Chenopodium trnL-F Indels') = 1; CHARSET HS4 (CHARACTERS = 'Chenopodium trnL-F Indels') = 1; CHARSET exon (CHARACTERS = 'Chenopodium trnL-F Indels') = 1; END;