#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 13:37 GMT TreeBASE (cc) 1994-2008 Study reference: Verbruggen H., Clerck O., Schils T., Kooistra W., & Coppejans E. 2005. Evolution and phylogeography of Halimeda section Halimeda. Molecular Phylogenetics and Evolution, 37: 789-803. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1472] BEGIN TAXA; TITLE ITS_ML; DIMENSIONS NTAX=60; TAXLABELS Halimeda_cuneata_1_H0195_1_AF407256 Halimeda_cuneata_1_KZN2K4_21_AY823840 Halimeda_cuneata_1_KZN2K4_41_AY823842 Halimeda_cuneata_2_KZN2K4_20_AY823843 Halimeda_cuneata_2_KZNb2352_AY823841 Halimeda_cuneata_3_H0210_AY823844 Halimeda_cuneata_3_WA182_AY823838 Halimeda_cuneata_4_SOC212b_AY823845 Halimeda_cuneata_4_SOC252_AF525595 Halimeda_cuneata_4_SOC348_AF525596 Halimeda_cuneata_7_H0500_AF823837 Halimeda_cuneata_7_H0501_AY823850 Halimeda_cuneata_7_H0502_AY823851 Halimeda_cuneata_f_digitata_Philippines_HV605_AY823846 Halimeda_cuneata_f_digitata_Philippines_HV732_AY823847 Halimeda_cuneata_f_undulata_H0122_AF407252 Halimeda_cuneata_f_undulata_HV586_AY823848 Halimeda_cuneata_f_undulata_HV683_AY823849 Halimeda_discoidea_1_99_029_AF525605 Halimeda_discoidea_1_AF525598 Halimeda_discoidea_1_AF525600 Halimeda_discoidea_1_AF525601 Halimeda_discoidea_1_H0041_AF525604 Halimeda_discoidea_1_H0117_AF525597 Halimeda_discoidea_1_H0153_AF525602 Halimeda_discoidea_1_H0191_AF525599 Halimeda_discoidea_1_HEC12634b_AF525603 Halimeda_discoidea_1_MAS153_AY823852 Halimeda_discoidea_1_MAS356_AY823853 Halimeda_discoidea_1_OMII118_AF823839 Halimeda_discoidea_1_SOC212a_AY823854 Halimeda_discoidea_1_SOC299_AF407254 Halimeda_discoidea_2_H0144_AF525585 Halimeda_discoidea_2_H0207_AF407249 Halimeda_discoidea_2_H0209_AF525587 Halimeda_discoidea_2_H0410_AF525586 Halimeda_discoidea_2_HV495_AY823855 Halimeda_gracilis Halimeda_hummii_H0251_AF525583 Halimeda_lacunalis_H0118_AF407246 Halimeda_lacunalis_H0121_AF525579 Halimeda_lacunalis_H0212_AF525580 Halimeda_lacunalis_HV306_1_AY786519 Halimeda_lacunalis_HV308_1_AY786520 Halimeda_macrophysa Halimeda_magnidisca Halimeda_taenicola_H0037_AF407255 Halimeda_taenicola_HV285_1_AY786521 Halimeda_taenicola_HV285_2_AY786522 Halimeda_taenicola_HV306_3_AY786523 Halimeda_tuna_1_H0231_AF407248 Halimeda_tuna_1_Jamaica_HV447_AY823857 Halimeda_tuna_1_Jamaica_HV458_AY823858 Halimeda_tuna_1_Jamaica_HV459_AY823859 Halimeda_tuna_1_Mexico_H0231_AF407248 Halimeda_tuna_1_Panama_H0074_AF525589 Halimeda_tuna_2_H0113_AF407250 Halimeda_tuna_2_Malta_H0202_AF525588 Halimeda_tuna_2_Slovenia_H0493_AY823856 Halimeda_tuna_2_Spain_HV319__AY786524 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1041] TITLE ITS; LINK TAXA = ITS_ML; DIMENSIONS NCHAR=528; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Halimeda_cuneata_1_H0195_1_AF407256 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGA-------GA{AG}TT---C--GAAC--AGGCG-TCAG--C--------CAGA---G--GCGA--CGCCGGAGTCTAGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCCTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCG--CCAGTGCTCTCCCCTCGG-TCGC-GGAGAGGCGG{CT}AGTGGACGAGACACCCG----ACGGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCCGGTCTCCAACGCTC-GG--TCGAAGGACTTG-A-GCG----ACGGACGACAGT---C---GAGAC------------GCTTCGATGTCCTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_cuneata_1_KZN2K4_21_AY823840 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGA-------GAATT---C--GAAC--AGGCG-TCAG--C--------CAA----G--GCGA--CGCCGGAGTCTAGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCCTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCG--CCAGTGCTCTCCCCTCGG-TCGC-GGAGAGGCGGCAGTGGACGAGACACCCG----ACGGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCCGGTCTCCAACGCTC-GG--TCGAAGGACTTG-A-GCG----ACGGACGACAGT---C---GAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_cuneata_1_KZN2K4_41_AY823842 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGA-------GAATT---C--GAAC--AGGCG-TCAG--C--------CAA----G--GCGA--CGCCGGAGTCTAGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCCTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCG--CCAGCGCTCTCCCCTCG{AG}-TCGC-GGAGAGGCGGCAGTGGACGAGACACCCG----ACGGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCCGGTCTCCAACGCTC-GG--TCGAAGGACTTG-A-GCG----ACGGACGACA{CG}T---C---GAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_cuneata_2_KZN2K4_20_AY823843 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGA-------GAATT---C--GAAC--AGGCG-TCAG--CGCTTCG--CAA----GAGGCGA--CGCCGGAGTCTAGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCCTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCG--CCAGCGCTCTCCC-TC-GATCGC-GGAGAGGCG{AG}CAGTGGACGCGACACCCG----ACCGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCCGGTCGCCGCAGCTC-GG--TCGAAGGACC-GCA-GC----CACGGACGACAGT---C---GAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_cuneata_2_KZNb2352_AY823841 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGA-------GAATT---C--GAAC--AGGCG-TCAG--CGCTTCG--CAA----GAGGCGA--CGCCGGAGTCTAGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCCTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCG--CCAGCGCTCTCCC-TC-GATCGC-GGAGAGGCGGCAGTGGACGCGACACCCG----ACCGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCCGGTCGCCGCAGCTC-GG--TCGAAGGACC-GCA-GC----CACGGACGACAGT---C---GAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_cuneata_3_H0210_AY823844 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AATGC-------GAATT---C--G-G---AGGCG-TCGAAGCCCTCA----GA-G--G--GCGA--CGCCGGAGTGTGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCCTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA--AGAGCGCTCTCCCCTC-GACGGC-GGAGAGGCGGCAGTGGACGCGACACCCG----ACCGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCCGGTCGCCGCAGCTC-GG--TCGAAGGACCTG-A-GCG----ACGGACGGCAGT---CT--GAAAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_cuneata_3_WA182_AY823838 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AATGC-------GAATT---C--G-G---AGGCG-TCGAAGCCCTCA----GA-G--G--GCGA--CGCCGGAGTGTGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCCTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA--AGAGCGCTCTCCCCTC-GACGGC-GGAGAGGCGGCAGTGGACGCGACACCCG----ACCGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCCGGTCGCCGCAGCTC-GG--TCGAAGGACCTG-A-GCG----ACGGACGGCAGT---CT--GAAAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_cuneata_4_SOC212b_AY823845 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGC-------GAATT---C--G-G---AGGCG-TCGAGGCCCTCT----GC-G--G--GCGA--CGCCGGAGTGAGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA--CCAGCGCTCTCCCCTC-GACGGC-GGAGAGGCGGCAGTGGACGCGACACCCG----ACCGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCCGGTCGCCGCAGCTC-GG--TCGAAGGACCTG-A-GCG----ACGGACGGCAGT---C---GAAAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_cuneata_4_SOC252_AF525595 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGC-------GAATT---C--G-G---AGGCG-TCGAGGCCCTCT----GC-G--G--GCGA--CGCCGGAGTGAGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA--CCAGCGCTCTCCCCTC-GACGGC-GGAGAGGCGGCAGTGGACGCGACACCCG----ACCGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCCGGTCGCCGCAGCTC-GG--TCGAAGGACCTG-A-GCG----ACGGACGGCAGT---C---GAAAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_cuneata_4_SOC348_AF525596 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGC-------GAATT---C--G-G---AGGCG-TCGAGGCCCTCT----GC-G--G--GCGA--CGCCGGAGTGAGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA--CCAGCGCTCTCCCCTC-GACGGC-GGAGAGGCGGCAGTGGACGCGACACCCG----ACCGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCCGGTCGCCGCAGCTC-GG--TCGAAGGACCTG-A-GCG----ACGGACGGCAGT---C---GAAAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_cuneata_7_H0500_AF823837 TTTTCGTAGGTGAACCTGCGAAAGGATCATTACCGGCACATCCC---------CAACAC-C-----G--CT---CG-GA----AGGCG-TCCG--CCCCTCG-TCGG-GCAG--GCGA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCA-GGCCGCGCTCTCCCCCTCG-TCGC-GGAGAGGCAGCAGTGGACGCGGCACCCG----ACCG-CG-GG--TCGGCGTGCCCGTACCGGCGCTCCCCGTC{AG}CCGCCGCTC-GG--TCGAAGGGCCAGCG-GCGCGAGGCGCACCACGTT---C---GAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_cuneata_7_H0501_AY823850 TTTTCGTAGGTGAACCTGCGAAAGGATCATTACCGGCACATCCC---------CAACAC-C-----G--CT---CG-GA----AGGCG-TCCG--CCCCTCG-TCGG-GCAG--GCGA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCA-GGCCGCGCTCTCCCCCTCG-TCGC-GGAGAGGCAGCAGTGGACGCGGCACCCG----ACCG-CG-GG--TCGGCGTGCCCGTACCGGCGCTCCCCGTCACCGCCGCTC-GG--TCGAAGGGCCAGCG-GCGCGAGGCGCACCACGTT---C---GAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_cuneata_7_H0502_AY823851 TTTTCGTAGGTGAACCTGCGAAAGGATCATTACCGGCACATCCC---------CAACAC-C-----G--CT---CG-GA----AGGCG-TCCG--CCCCTCG-TCGG-GCAG--GCGA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCA-GGCCGCGCTCTCCCCCTCG-TCGC-G{AG}A{AG}AGGCAGCAGTGGACGCGGCACCCG----ACCG-CG-GG--TCGGCGTGCCCGTACCGGCGCTCCCCGTC{AG}CCGCCGCTC-GG--TC{AG}AAGGGCCAGCG-GCGCGAGGCGCACCACGTT---C---GAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_cuneata_f_digitata_Philippines_HV605_AY823846 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAAGA--------GAATT---C--GAAC--AGGCG-TCCG--CGC{CT}AC----------G--GCGA--CGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTCGGAC------GA-CGAGAGGCGGCAGTGGACGAGGCACCCG----AC{AG}GAC--G---TCGGCGTGTCCGTGCCAGCAC-GCACGTCACCGC{AT}GCTCTGG--TCGAAGGACCTC-A-GCG----ACGGACGACTGT---C---GAAG-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_cuneata_f_digitata_Philippines_HV732_AY823847 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAAGA--------GAATT---C--GAAC--AGGCG-TCCG--CGCCAC----------G--GCGA--CGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTCGGAC------GA-CGAGAGGCGGCAGTGGACGAGGCACCCG----ACGGAC--G---TCGGCGTGTCCGTGCCAGCAC-GCACGTCACCGCTGCTCTGG--TCGAAGGACCTC-A-GCG----ACGGACGACTGT---C---GAAG-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_cuneata_f_undulata_H0122_AF407252 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCCA{GT}CGAGAGAGAACGC-C-----GCATT---C--GTGCGGAGGCG-TC-G--CA--------GA----G-AACGA--CGCCGCAGTCTCGGAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTCCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCG--CCAGCGCTCTCCCTTC-GACGGC-GGAGAGGCGACGGTGGACGAGGCACCCGACCGACNGAC--GTCGTCGGCGTGTCCGTGCCAGCGC-GACTGTCGACGCCGCTC-GG--TCCAAGCGCC-GAACGCG----GCGGACGACGCT---C---GTAC-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_cuneata_f_undulata_HV586_AY823848 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCCATCGAGAGAGAACGC-C-----GCATT---C--GTGCGGAGGCG-TC-G--CA--------GA----G-AACGA--CGCCGC{AG}GTCTCGGAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTCCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCG--CCAGCGCTCTCCCCTC-GACGGC-GGAGAGGCGACGGTGGACGAGGCACCCGACCGACTGAC--GTCGTCGGCGTGTCCGTGCCAGCGC-GACTGTCGACGCCGCTC-GG--TCCAAGCGCC-GAA{AC}GCG----GCGGGCGAC{AG}CC---C---GTGCACTC{AT}{CG}AACGAACGCTGCGATGTC{GT}TC{GT}GCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_cuneata_f_undulata_HV683_AY823849 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCCAGCGAGAGAGAACGC-C-----GCATT---C--GTGCGGAGGCG-TC-G--CA--------GA----G-AACGA--CGCCGCAGTCTCGGAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTCCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCG--CCAGCGCTCTCCCCTC-GACGGC-GGAGAGGCGACGGTGGACGAGGCACCCGACCGACAGAC--GTCGTCGGCGTGTCCGTGCCAGCGC-GACTGTCGACGCCGCTC-GG--TCCAAGCGCC-GAACGCG----GCGGGCGACGCC---C---GTGCACTCAGAACGAACGCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_discoidea_1_99_029_AF525605 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAAGA--------GAATT---C--GAAC--AGGCG-TCAG--CGCTAC----------G--GCGA--CGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGAAGATA-GAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTCGGAC------GA-CGAGAGGCGGCAGTGGACGAGGCACCCG----GCAGAC--G---TCGGCGTGTCCGTGCCAGCAC-GCACGTCACCGCAGCTCTGG--TCGAAGGACCTG-A-GCG----ACGGACGACTGT---C---GAAG-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATTAGCGG Halimeda_discoidea_1_AF525598 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAATA--------GAATT---C--GAAC--AGGCG-TCCG--CGCTAC----------G--GCGA--CGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTCGGAC------GA-CGAGAGGCGGCAGTGGACGAGGCACCCG----ACAGAC--G---TCGGCGTGTCCGTTCCAGCAC-GCACGTCACCGCAGCTCTGG--TCGAAGGACCTC-A-GCG----ACGGACGACTGT---C---GAAG-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_discoidea_1_AF525600 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAAGA--------GAATT---C--GAAC--AGGCG-TCCG--CGCTAC----------G--GCGA--CGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTCGGAC------GA-CGAGAGGCGGCAGTGGACGAGGCACCCG----ACAGAC--G---TCGGCGTGTCCGTGCCAGCAC-GCACGTCACCGCAGCTCTGG--TCGAAGGACCTC-A-GCG----ACGGACGACTGT---C---GAAG-------------GCTGCGATGTCCTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_discoidea_1_AF525601 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAAGA--------GAATT---C--GAAC--AGGCG-TCCG--CGCTAC----------G--GCGA--CGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTT{CT}GGGTGGAGGGAGGACGCGTCGG{CT}GACATCGCCCTGCA---CA--GCCCTCGGAC------GA-CGAGAGGCGGCAGTGGACGAGGCACCCG----ACGGAC--G---TCGGCGTGTCCGTGCCAGCAC-GCACGTCACCGCAGCTCTGG--TCGAAGGACCTC-A-GCG----ACGGACGACTGT---C---GAAG-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_discoidea_1_H0041_AF525604 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAAGA--------GAATT---C--GAAC--AGGCG-TCAG--CGCTAC----------G--GCGA--CGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTCGGAC------GA-CGAGAGGCGGCAGTGGACGAGGCACCCG----ACAGAC--G---TCGGCGTGTCCGTGCCAGCAC-GCACGTCACCGCAGCTCTGG--TCGAAGGACCTC-A-GCG----ACGGACGACTGT---C---GAAG-------------GCTGCGATGTCCTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_discoidea_1_H0117_AF525597 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAAGA--------GAATT---C--GAA{CT}--AGGCG-TCCG--CGCTAC----------G--GCGA--CGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTC{GT}GAC------GA-CGAGAGGCGGCAGTGGACGAGGCACCCG----GCGGAC--G---TCGGCGTGTCCGTGCCAGCAC-GCACGTCACCGCAGCTCTGG--TCGAAGGACCTC-A-GCG----ACGGACGACTGT---C---GAAG-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_discoidea_1_H0153_AF525602 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------{AG}AAGA--------GAATT---C--GAAC--AGGCG-TCCG--CGCTAC----------G--GCGA--CGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCTTGCA---CA--GCCCTCGGAC------GA-CGAGAGGCGGCAGTGGACGAGGCACCCG----GCGGAC--G---TCGGCGTGTCCGTGCCAGCAC-GCACGTCACCGCAGCTCTTGG-TCGAAGGACCTC-A-GCG----ACGGACGACTGT---C---GAAG-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_discoidea_1_H0191_AF525599 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAAGA--------GAATT---C--GAAC--AGGCG-TCCG--CGCCAC----------G--GCGA--CGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTCGGAC------GA-CGAGAGGCGGCAGTGGACGAGGCACCCG----ACAGAC--G---TCGGCGTGTCCGTGCCAGCAC-GCACGTCACCGC{AT}GCTCTGG--TCGAAGGACCTC-A-GCG----ACGGACGACTGT---C---GAAG-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_discoidea_1_HEC12634b_AF525603 TTTTCGTAGGTGCACCTGCGAAAGGATCATTATCGGCACATCCC---------AAAGA--------GAATT---C--GAAC--AGGCG-TCCG--CGCTAC----------G--GCGA--CGCCGAAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTCGGAC------GA-CGAGAGGCGGCAGTGGACGAGGCACCCG----ACGGAC--G---TCGGCGTGTCCGTGCCAGCAC-GCACGTCACCGCAGCTCTGG--TCGAAGGACCTC-A-GCG----ACGGACGACTGT---C---GAAG-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_discoidea_1_MAS153_AY823852 TTTTCNTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGA-------GAATT---C--GAAC--AGGCG-TCAG--CTCT-------A---GG--GCGA--CGCCGGAGTCTGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTCGGAC------GA-GGAGAGGCACCAGTGGACGAGGCACCCG----ACGGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCATCTCGCCGTAGCTA-GG--TCGAAGGACCTC-G-GCG----ACGGACGACTGT---C---GAGA-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_discoidea_1_MAS356_AY823853 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGA-------GAATT---C--GAAC--AGGCG-TCAG--CTCT-------A---GG--GCGA--CGCCGGAGTCTGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTCGGAC------GA-GGAGAGGCACCAGTGGACGAGGCACCCG----ACGGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCATCTCGCCGTAGCTA-GG--TCGAAGGACCTC-G-GCG----ACGGACGACTGT---C---GAGA-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_discoidea_1_OMII118_AF823839 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGA-------GAATT---C--GAAC--AGGCG-TCAG--CTCT-------A---GG--GCGA--CGCCGGAGTCTGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTCGGAC------GA-GGAGAGGCACCAGTGGACGAGGCACCCG----ACGGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCATCTCGCCGTAGCTA-GG--TCGAAGGACCTC-G-GCG----ACGGACGACTGT---C---GAGA-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_discoidea_1_SOC212a_AY823854 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAAGA--------GAATT---C--GAAC--AGGCG-TCAG--CGCTAC----------G--GCGA--CGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCG{CT}GTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTCGGAC------GA-CGAGAGGCGGCAGTGGACGAGGCACCCG----GCAGAC--G---TCGGCGTGTCCGTGCCAGCAC-GCACGTCACCGCAGCTCTGG--TCGAAGGACCTG-A-GCG----ACGGACGACTGT---C---GAAG-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_discoidea_1_SOC299_AF407254 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAAGA--------GAATT---C--GAAC--AGGCG-TCAG--CGCTAC----------G--GCGA--CGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGAAGATA-GAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGTGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA---CA--GCCCTCGGAC------GA-CGAGAGGCGGCAGTGGACGAGGCACCCG----GCAGAC--G---TCGGCGTGTCCGTGCCAGCAC-GCACGTCACCGCAGCTCTGG--TCGAAGGACCTG-A-GCG----ACGGACGACTGT---C---GAAG-------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATTAGCGG Halimeda_discoidea_2_H0144_AF525585 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACAC-T-----G--TCAAATGTGAA---AGGCG-TCAG--CCCTGCGCTCG---CAG--GCGA--CGCCGGAGTTTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCAACATCGCCCTGCACATCAGCGCTCTCCCCTC-G-TCGC-GGAGAGGCAGCGGTGGACGCGGCACCCG----ACTGCCC-G---TCGGCGTGCCCGTGCCAGCTCTCGCCGTCGCCGCCGCTC-GG--TCGAATGACCTGCA-GCGG-ACGCGGAC-AC--A---C--AGAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_discoidea_2_H0207_AF407249 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACAC-T-----G--TCAAATGTGAA---AGGCG-TCCG--CCCTGCGCTCG---CAG--GGAA--CGCCGGAGTTTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCACATCAGCGCTCTCCCCTC-G-TCGC-GGAGAGGCAGCGGTGGACGCGGCACCCG----ACTGCCC-G---TCTGCGTGCCCGTGCCAGCTCTCGCCGTCGCCGCCGCTC-GG--TCGAATGACCCGCA-GCGG-ACGCGGAC-AC--A---C--AGAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_discoidea_2_H0209_AF525587 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACAC-T-----G--TCAAATGTGAA---AGGCG-TCAG--CCCTGCGCTCG---CAG--GAGA--CGCCGGAGTTTCGAAAGCATGCGTGTTGGACGGCTCGGTTCCCGTGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCTTCGCCTTCGGGCGGAGGGAGGACGCGTCGGGCACATCGCCCTGCACATCAGCGCTCTCCCCTC-G-TCGC-GGAGAGGCAGCGGTGGACGCGGCACCCG----ACTGCCC-G---TCTGCGTGCCCGTGCCAGCTCTCGCCGTCGCCGCCGCTC-GG--TCGAATGACCCGCA-GCGG-ACGCGGAC-AC--A---C--AGAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_discoidea_2_H0410_AF525586 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACAC-T-----G--TCAAATGTGAA---AGGCG-TCAG--CCCTGCGCTCG---CAG--GCGA--CGCCGGAGTTTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCAACATCGCCCTGCACATCAGCGCTCTCCCCTC-G-TCGC-GGAGAGGCAGCGGTGGACGCGGCACCCG----ACTGCCC-G---TCGGCGTGCCCGTGCCAGCTCTCGCCGTCGCCGCCGCTC-GG--TCGAATGACCTGCA-GCGG-ACGCGGAC-AC--A---C--AGAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_discoidea_2_HV495_AY823855 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACAC-T-----G--TCAAATGTGAA---AGGCG-TC{AG}G--CCCTGCGCTCG---CAG--GAGA--{CT}GCCGGAGTTTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCACATCAGCGCTCTCCCCTC-G-TCGC-GGAGAGGCAGCGGTGGACGCGGCACCCG----ACTGCCC-G---TCGGCGTGCCCGTGCCAGCTCTCGCCGTCGTCGCCGCTC-GG--TCGAATGACCTGCA-GCGG-ACGCGGAC-AC--A---C--AGAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_gracilis TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------TATTCTC-----GAACT---C--AAAC--AGGCGCTCAG--CCCT-T----G-----G--GCGA--CGCTGCAGTATCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCTGGCGGAGGGAGGACNCGTCGG{CG}NACATCGCCCCGNA--CCACCGCTCTCCCACC--ACCGAGGGAAAGGCGGCAGTGGACGGAGCACCCG------------GA---CGGCGTGTCCGTTCCCGCTCGCNCAGTCGCTCCGNGT--GGCCTCNACANACCNGNG-GNCCNACTCGACCGAAANA-------NAANCC-----------GTNGCNATGCCGTCGGCNAGGAAACCCGTTGAACTTAANCNNATNATTAANCGG Halimeda_hummii_H0251_AF525583 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC------GACCGACACACA----G--TC--CC--GAA---AGGCG-TC-G--CCCCTC---CGA--GGG--GCGGG-CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCCTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCA-AGCAGCGCTCTCCCCCTCG-TCGC-GGAGAGGCCG{AC}GGTGGACGAGGCACCCG----ACTGACC-G---TCGGCGTGCCCGTGCAGGCGCCCCGCGTCGCCGCCGCCA-GG--TCGAAGGGCCGGCG-GTCGGAGGCGAGC-ACGTT---C-GAAAGAC------------GCCGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_lacunalis_H0118_AF407246 TTTTCGTAGGTGAGCCTGCGAAAGGGTCATTATCGGCACATCCC----------AACACACACATCG--TT---C--GAA---AGGCG--C-G--CCTCTT---------GG--GCGA--CGCCGGAGCTTAGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCTTCGCCCTCGGGCGTGGGGAGGACGCGTCGGCGACATCGCCCTGTG-TGCAGCGCTCTCCTCCTTGATCTC-GGAGAGGCGGCAGTGGACG-GACACCCG----TCGGACAGG---TCGGCGTGCCCGTTGAAGAGCTGCCCGTCGACGTCGCTC-GG--TCGAAGGACCGTCG-GCG----AGAGAC-GCA-T---C---GAAAGGTAA--------GTTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_lacunalis_H0121_AF525579 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACACACACATCG--TT---C--GAA---AGGCG--C-G--CCTCTT---------GG--GCGA--CGCCGGAGCTTAGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCTTCGCCCTCGGGCGTGGGGAGGACGCGTCGGCGACATCGCCCTGTG-TGCAGCGCTCTCCTCCTTGATCTC-GGAGAGGCGGCAGTGGACG-GACACCCG----TCGGACAGG---TCGGCGTGCCCGTTGAAGAGCTGCCCGTCGACGTCGCTC-GG--TCGAAGGACCGTCG-GCG----AGAGAC-GCA-T---C---GAAAGGTAA--------GTTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_lacunalis_H0212_AF525580 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACACACACATCG--TT---C--GAA---AGGCG--C-G--CCTCTT---------GG--GCGA--CGCCGGAGCTTAGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCTTCGCCCTCGGGCGTGGGGAGGACGCGTCGGCGACATCGCCCTGTG-TGCAGCGCTCTCCTCCTTGATCTC-GGAGAGGCGGCAGTGGACG-GACACCCG----TCGGACAGG---TCGGCGTGCCCGTG{AT}A-GAGCTGCCCGTCGACGTCGCTC-GG--TC{GT}AACGACCGTCG-GCG----AGAGAC-GCA-T---C---GAAAGGTAA--------GTTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_lacunalis_HV306_1_AY786519 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACACACACATCG--TT---C--GAA---AGGCG--C-G--CCT{CG}TT---------GG--GCGA--CGCCGGAGCTTAGAAAGCATGCG{GT}GG{CT}GGACGGCTCGGTTCCCGCGTC{AG}ATGAAGGACGTAGCGA-GATACGAA{AG}GGTGTTGCGAATTGCAAGATTTCGCGAGTCA{AC}TGACCATCCGAATGCATCGCC{GT}CCCTCCCTTCGCCCTCGGGCGTGGGGAGGACGCGTCGG{AC}{GT}ACATCGCCCTGTG-TGCAGCGCTCTCCT{CG}CTTGATATC-{AG}GAGAGGCGG{CG}AG{CT}GGAC{AG}-GACACCCG----ACGGACAGG---TCGGCGTGCCCGTT{AC}AAGAGCTGCCCGTCGACGTCGCTC-GG--TCTAACGACCGTCG-GCG----AGAGAC-GCA-T---C---GAAAGGTAA--------GTTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_lacunalis_HV308_1_AY786520 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGC{AG}CATCCC----------AACACACACATCG--TT---C--GAA---AGGCG--C-G--CCTCTT---------GG--GCGA--CGCCGGAGCTTAGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCTTCGCCCTCGGGCGTGGGGAGGACGCGTCGGCGACATCGCCCT{AG}TG-TGCAGCGCTCTCCTCCTTGATATC-GGAGAGGCGGCAGTGGAC{AG}-GACACCCG----ACGGACAGG---TCGGCGTGCCCGTTCAAGAGCTGCCCGTCGACGTCGCTC-GG--TCTAACGACCGTCG-GCG----AGAGAC-GCA-T---C---GAAAGGTAA--------GTTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_macrophysa TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AANNNNN-----N--TT---C--GAA---AGGCG-TC-G--ACTTCT---C-A--GAG--GCGA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAA{GT}GACGTAG{CT}GA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGC{AG}--CCAGCGCTCTCCC-TC-GATCGC-GGAGAGGC{CT}GCGGTGGACGCGACACCCG----AC{CT}G-TT-GAAGTCGGCGTGTCCGTGCGAGCGC-GACTGTCGACGC{CT}GCCC-TG--TCCAAGAAC--GAG-G{CT}G----GCGGACGACGCTGAAC---GAAAC------------GCCGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_magnidisca TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AATGC-------GAATT---C--GAAC--AGGCG-TCCACGCC{CT}TCC----GA-G--G--GCGA--CGCCGAAGTCTGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCA--CCAGCGCTCTCCCCTC-GACGGC-GGAGAGGCGGCAGTGGACGCGACACCCG----ACCGAC--G---TCGGCGTGTCCGTGCCAGCGC-GCCGGTCGCCGCAGCTC-GG--TCGAAGGACCTG-A-GCG----ACGGACGGCAGT---C---GAAAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_taenicola_H0037_AF407255 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGA-------GGATT---CTCGAAC--AGGCG-TCGGCGCCCTNT----GA-GGCG--GCGAGACGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCG--CCAGCGCTCTCCCCTC-GATCGC-GGAGAGGCGGCAGTGGACGCTGCACCCG----ACGGAC--G---TCGGCGTGCGCGTGCCAGCGC-GCCAGTCGCCACCGCTC-GG--TCGAAGGACC-GCG-GCG----ACGGACGACGGAA------GAAA--TAC--------GGTGCGATGTCCTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_taenicola_HV285_1_AY786521 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGA-------GGACT---CTCGAAC--AGGC-CTCGGCGCCCTCT----GA-GGCG--GCGAGACGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGNCCTGCG--CCAGCGCTCTCCCCTC-GATCGC-GGAGAGGCGGCAGTGGACGCTGCACCCG----ACGGAC--G---TCGGCGTGCGCGTGCCAGCGC-GCCAGTCGCCACCGCTC-GG--TCGAAGGACC-GCG-GCG----ACGGACGACGGAA------GAAA--TAC--------GGTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_taenicola_HV285_2_AY786522 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGA-------GGACT---CTCGAAC--AGGCG-TGGGCGCCCTGT----GA-GGCG--GCGAGACGCCGGAGT-TGGAAAGCATGCGTGGTGCACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCTCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCG--CCAGCGCTCTCCCCTC-GATCGC-GGAGAGGCGGCAGTGGACGCTGCACCCG----ACGGAC--G---TCGGCGTGCGCGTGCCAGCGC-GCCAGTCGCCACCGCTC-GG--TCGAAGGACC-GCG-GCG----ACGGACGACGGAA------GAAA--TAC--------GGTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_taenicola_HV306_3_AY786523 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACGA-------GGACT---CTCGAAT--AGGCG-TCGGCGCCCTCT----GA-GGCG--GCGAGACGCCGGAGT-TGGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCG--CCAGCGCTCTCCCCTC-GATCGC-GGAGAGGCGGCAGTGGACGCTGCACCCG----ACGGAC--G---TCGGCGTGCGCGTGCCAGCGC-GCCAGTCGCCACCGCTC-GG--TCGAAGGACC-GCG-GCG----ACGGACGACGGAA------GAAA--TAC--------GGTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_tuna_1_H0231_AF407248 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAACAA-CA----G--TT--TC--AAAG--AGGCG-TCTG--CCTTCT---CGA--GAG--GCGA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCT-AG-AGCGCTCTCCCCCTCG-TCGC-GGAGAGGCCGCAGTGGACGAGGCAACCG----AC-GTCG-G---TCGGCGTGCCCGTGACGTCGCTCCACTTCGCCGCCGCTC-GG--TCGAAGGGCCGGCG-GTCGGAGGCGAAC-ACGTA---C-GAAAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_tuna_1_Jamaica_HV447_AY823857 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAACAA-CA----G--TT--GC--AAAG--AGGCG-TCCG--CCTTCT---CGA--GAG--GCGA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCG-AG-AGCGCTCTCCCCCTCG-TCGC-GGAGAGGCCGCAGTGGACGA{AG}GCACCCG----AC-GTCG-G---TCGGCGTGCCCGTGAC{GT}TCGCTCCACGTCGCCGCCGCTC-GG--TCGAA{AG}GGCCGGCG-GTCGGA{AG}GCGAAC-ACTTA---C-GAAAGAC------------GCTGCGATGTCGTC{AG}GCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_tuna_1_Jamaica_HV458_AY823858 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAACAA-CA----G--TT--{GT}C--AAAG--AGGCG-TC{CT}G--CCTTCT---CGA--GAG--GCGA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTA{AG}CGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGA{AG}GGAGGACGCGTCGGCGACATCGCCCCGCG-AG-AGCGCTCTCCCCCTCG-TCGC-GGAGAGGCCGCAGTGGACGA{AG}GCACCCG----AC-GTCG-G---TCGGCGTGCCCGTGACGTCGCTCCACGTCGCCGCCGCTC-GG--TCGAAGGGCCGGCG-GTCGGAGGCGAAC-ACTTA---C-GAAAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_tuna_1_Jamaica_HV459_AY823859 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAACAA-CA----G--TT--GC--AAAG--AGGCG-TCCG--CCTTCT---CGA--GAG--GCGA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCG-AG-AGCGCTCTCCCCCTCG-TCGC-GGAGAGGCCGCAGTGGACGAGGCACCCG----AC-GTCG-G---TCGGCGTGCCCGTGAC{GT}TCGCTCCACGTCGCCGCCGCTC-GG--TCGAAGGGCCGGCG-GTCGGAGGCGAAC-ACTTA---C-GAAAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_tuna_1_Mexico_H0231_AF407248 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAACAA-CA----G--TT--TC--AAAG--AGGCG-TCTG--CCTTCT---CGA--GAG--GCGA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCT-AG-AGCGCTCTCCCCCTCG-TCGC-GGAGAGGCCGCAGTGGACGAGGCAACCG----AC-GTCG-G---TCGGCGTGCCCGTGACGTCGCTCCACTTCGCCGCCGCTC-GG--TCGAAGGGCCGGCG-GTCGGAGGCGAAC-ACGTA---C-GAAAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_tuna_1_Panama_H0074_AF525589 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC---------AAACAA-CA----G--TT--TC--AAAG--AGGCG-TCTG--CCTTCT---CGA--GAG--GCGA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCTTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCCGCT-AG-AGCGCTCTCCCCCTCG-TCGC-GGAGAGGCCGCAGTGGACGAGGCAACCG----AC-GTCG-G---TCGGCGTGCCCGTGACGTCGCTCCACTTCGCCGCCGCTC-GG--TCGAAGGGCCGGCG-GTCGGAGGCGAAC-ACGTA---C-GAAAGAC------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_tuna_2_H0113_AF407250 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACAC-T-----G--TTGTCC-TGA----AGGCG-TCAG--CCCTCTCCTCGGAGCGGCGGCGA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCCTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCG-AG-AGCGCTCTCCCCCCAT-TCGC-GGAGAGGCCGCAGTGGACNAGGCACCCG----ACCGATT-G---TCGGCGTGCACGTGACAGCGCTGCCCGCCGTCGCCGCTC-GG--TCGAAGGACCCGCG-GCGGCAGGCGAACGATTG----C---GAACT------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_tuna_2_Malta_H0202_AF525588 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACAC-T-----G--TTGTCC-TGA----AGGCG-TCAG--CCCTCTCCTCGGAGCGGCGGCGA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCCTCGGGCGGAGGGA{AG}GACGCGTCGGCGACAT{CT}GCCCTGCG-AG-AGCGCTCTCCCCCCAT-TCGC-GGAGAGGCCGCAGTGGACGAGGCACCCG----ACCGATT-G---TCGGCGTGCACGTGACAGCGCTGCCCGCCGTCGCCGCTC-GG--TCGAAGGACCCGCG-GCGGCAGGCGA{AC}CGATTG----C---GAATT------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCAATAAGCGG Halimeda_tuna_2_Slovenia_H0493_AY823856 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACAC-T-----G--TTGTCC-TGA----AGGCG-TCAG--CCCTCTCCTCGGAGCGGC---GA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCCTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCG-AG-AGCGCTCTCCCCCCAT-TCGC-GGAGAGGCCGCAGTGGACGAGGCACCCG----ACCGAT{GT}-G---TCGGCGTGCACGTGACAGCGCTGCCCGCCGTCGCCGCTC-GG--TCGAAGGACCCGCG-GCGGCA{GT}GCGAACGATTG----C---GAATT------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG Halimeda_tuna_2_Spain_HV319__AY786524 TTTTCGTAGGTGAACCTGCGAAAGGATCATTATCGGCACATCCC----------AACAC-T-----G--TTGTCC-TGA----AGGCG-TCAG--CCCTCTCCTCGGAGCGGCGGCGA--CGCCGGAGTCTCGAAAGCATGCGTGGTGGACGGCTCGGTTCCCGCGTCGATGAAGGACGTAGCGA-GATACGAAAGGTGTTGCGAATTGCAAGATTTCGCGAGTCAATGACCATCCGAATGCATCGCCGCCCTCCCCTCGCCCTCGGGCGGAGGGAGGACGCGTCGGCGACATCGCCCTGCG-AG-AGCGCTCTCCCCCCAT-TCGC-GGAGAGGCCGCAGTGGACGAGGCACCCG----ACCGATT-G---TCGGCGTGCACGTGACAGCGCTGCCCGCCGTCGCCGCTC-GG--TCGAAGGACCCGCG-GCGGCAGGCGAACGATTG----C---GAACT------------GCTGCGATGTCGTCGGCGAGGAAACCCGCTGAACTTAAGCATATCATTAAGCGG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS) = N: 1-528; CODONPOSSET CodonPositions (CHARACTERS = ITS) = N: 1-528; END;