#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 0:32 GMT TreeBASE (cc) 1994-2008 Study reference: Rodriguez-prieto A., Igea J., & Castresana J. 2014. Development of rapidly evolving intron markers to estimate multilocus species trees of rodents. PLOS ONE, 9: e96032. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15064] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=15; TAXLABELS Apodemus_flavicollis Atherurus_macrourus Cavia_porcellus Cynomys_ludovicianus Glis_glis Homo_sapiens Hydrochoerus_hydrochaeris Microtus_duodecimcostatus Microtus_lusitanicus Mus_musculus Myocastor_coypus Octodontomys_gliroides Proechimys_guairae Rattus_norvegicus Sciurus_vulgaris ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19790] TITLE 'Mammal Agxt-intron-10'; LINK TAXA = Taxa; DIMENSIONS NCHAR=273; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Apodemus_flavicollis GGGCTTTGTAGCCAGAGGCACTAGCTCTTATCAAGTCCCACTGCACAGCTCATCTGTGTTGGGTCACTGCAGGGAACAGCCTGATCACTTCAAGTAGAATATCCTCAGCCCTCTCCACCACAGGGGAGGTCACACA---------------TTTACCAGGTCCATTCTGCTGTGTGACCGTCCCTGGCCATGCCCCTGAA--CTCCATGTTTTGGGTACAGTGAGGAGGGCTGGCTCTGGCCCCCTGACGTCTGCCTGCTCCATTCCTACCAG Atherurus_macrourus GGCCC---------AGGACAGCAGCTCTTG-AGAGCGTGAGGGC------------CGGAGGGACCCTG-----AAGGCTTTTCCCA-TCCGCTTACAGTGTCCATCCTTCTGTCCCTGTGGGAGGAAACCGCAGACCTGGTCCAGCGCATTCTCCCCAGCCAGCCATGCTAAGTGACCCTCACTGACCACCACGCCGGCCCCTTCTCCAGCTCTGTGGCACAGTGGGAGCTGACCTGGGTCCCTCGTCATCTGCCTG-CCTGCACCCACCAG Cavia_porcellus GACTC---------GGGACAGCAGCTCTCTGAGAGCAGGAGCAC------------TGGGAGGACACAGCAGTGAGGGCCTTTCCTG-CCCACTTGGAATGGGCTTCCTCCCATCCCCTCGGGGGGAAACCTCAGGCCTGGTCCAACAGACTCTATCAGGCCAGCCATGCTGAGAGACCTTCTCTGCCCACTGGGCTGGC--CTTCTCCAGCTCTGTGCCATAGTGAGGGTTAGCTTAGGCTCACCAGCATCTGCCTG-CTTGTGCCCACCAG Cynomys_ludovicianus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Glis_glis --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapiens GGCCGGGGTCATCCGAAAGCCCAGCTCTCCAAGG--------------------------GGTATCCAGTAAAGGCAGCCTTTATGATTCCACTCGGAACATCCTTCCTTCCCTCTGACCAGACGGAAGCCCCACGCCTGGCCTGGCTGTGTCTCTGAG--TGGCAGTGGGGAGGGACCTTCACTG--CACCACCCTGTCCTCCCGTGTGGCTGCGGGTGCAGAGGGAGGCTGGCCTGGGTGCTCTGACGTCAGCCCGCCCTGTGCCCCCCAG Hydrochoerus_hydrochaeris GGCCCAGGACAGCAGGGACAGCAGCTCCCC-AGAGCAGAAGTGC------------TGGGGGGACGCAGTAGTGAGGGCCTTTCCTG-CCCACTCGGAATGGGCTTCCTTCCGTCCCCACGGGGGGAAACCTCAGGCCTGGTCCAGCAGACTCTGTCAGGCCAACCATGCTGAGTGACCTTCTCTGCCCACAGGGCCAGCCCCTTCTCCAGCTCTGTGCCACAGTGGGGGCTGGCTTGGGCTCCCCGACATCTGCCTG-CCTGTGCCCACCAG Microtus_duodecimcostatus -----------CCAGAGGCACTAGCCTGTATTGAGCCCTGCTGCACACGCCCCACCTGTGGGGTCACTGCAGGGGAA-----CAGCACCTCAGGTAGAATATCCTCAACCCTCTCCA-CACAGGGAAAGTCACACATCAG----------CTTTACCAGGTCCACTCTG----------------GCCCCCAACCCTGGACTCTCTATGTTTTGGGGACAGAAGGGAAGGCTGGCTCTGGCCCCCTGACATCTGCCTGTTCCACGCCTGCCAG Microtus_lusitanicus -----------CCAGAGGCACTAGCCTGTATTGAGCCCTGCTGCACACGCCCCACCTGTGGGGTCACTGCAGGGGAA-----CAGCACCTCAGGTAGAATATCCTCAACCCTCTCCA-CACAGGGAAAGTCACACATCAG----------CTTTACCAGGTCCACTCTG-----------------GCCCCAACCCTGGACTCTCTATGTTTTGGGGACAGAAGGGAAGGCTGGCTCTGGCCCCCTGACATCTGCCTGTTCCATGCCTGCCAG Mus_musculus GGGCTTTATAACCAGAGGCACTAGCCCTTATCAAGTCCTGCTGCACAGCCCATCTGTGTTGGGTCACTGCAGGGAAGGGCATGAGCACCTCAAATAGAATATCCTCAGCCCTCTCCACCACAGGGGAGGTCACACATCAG----------CTTTACCAGGTCCACTCTGCTGAGTGACCCTCCCTGGTCGTACCCCTGAA--CTCTATGTTTTAGGTATAGTGGGGAGGGCTGGCTCTGACCCCCTGACATCTGCATGTTCCATGCCTACCAG Myocastor_coypus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Octodontomys_gliroides GCCCTGTGCTG-CGGGGCCCTGAGCCACTCTGGGGCACACGTGTCCCATCCACAAGTGGGAGGG-CCAGGACAGAGAGCCTCTCCCA-CACCCTTGGGACATCCTTCCTCCCAAGCCCATGGGGGGAAACCTCAGGCCTGGTCCAGCAGACTCTGCCAGGCCAGCCACACTGAGGGACCTTCAGTGACCACCGTGCCGGCCCCTTTTCCAGCCCTGCACCACAGGGGTGGCTGGTCCGGGCTCCCCAACACCTGCCCG-CCTGCACCCACCAG Proechimys_guairae GGCCTGTGCTGCCAGGGCCCTGAGCTCTCCCGAGGCCCATGTGCCCCATCCACAGATGGGAGGGCCCAGGACAGAGAGCCTTTCCCA-CACACTTGAGCCGTTCTTCCTCCAGTCTCCATGGGGGGAAGCCTCAGGCCTGGTCCCGCAGACTCTGCCAGGCCAGCCATACTGAGGGACCTTCAGTGACCACTGTGCCAGCCCCTTCTCCAGCCTTGTGCCAT-GGGGTGGCTGGCCTGGGCTCCCCAACACCTG-CCA-CCTGCACCCACCAG Rattus_norvegicus GGGCTTTGTAACCAGAGGCACTAG---TGAGTCAGTCCTGTTGCACAAGCCCACTGTGTGGGGTCACTGCAGGGGACAGCATGATCGCTTCAAGTAGAATAGCCTCAGCCTTCTCCACCACGGGGGGGGTCGCACATCAG----------CTTTACCAGGTCCACTCTGCTGAGTGACCCTCCCTGGCTGTACCCCTGAA--CTCTATGCTTTGGGTACAGTGGGGAGGGCTGGCTCTGGTTCCCTGACCTCTGCCTGTTCCATCCCTACCAG Sciurus_vulgaris --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END;