#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 14:04 GMT

TreeBASE (cc) 1994-2008

Study reference:
Ohkuma M., Saita K., Inoue T., & Kudo T. 2006. Comparison of four protein phylogeny
and detailed analysis based on glycelaldehyde-3-phosphate dehydrogenase sequences
of parabasalian symbionts in termite guts. Molecular Phylogenetics and Evolution,
null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1521]

BEGIN TAXA;
        TITLE  'alpha-tubulin';
        DIMENSIONS NTAX=18;
        TAXLABELS
            Devescovina_sp._D01
            Devescovina_sp._D10
            Holomastigotoides_mirabile_03B79
            Hypotrichomonas_acosta
            Monocercomonas_sp._1
            Monocercomonas_sp._2
            Pseudotrichonympha_grassii_03A54
            Spirotrichonympha_leidyi_02A66
            Stephanonympha_sp._St10
            Stephanonympha_sp._St48
            Tetratrichomonas_gallinarum
            Trichomitus_batrachorum
            Trichomonas_vaginalis_1
            Trichomonas_vaginalis_2
            Trichonympha_agilis_1
            Trichonympha_agilis_2
            Tritrichomonas_foetus_1
            Tritrichomonas_foetus_2
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1130]

	TITLE Fig2B;
	LINK TAXA = 'alpha-tubulin';
	DIMENSIONS NCHAR=378;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                            10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370        ]
[                                             .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .        ]
Devescovina_sp._D01                  HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVVEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGGAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
Devescovina_sp._D10                  HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQITNGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATRAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGGAVATIKTRRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYTKRAFV
Holomastigotoides_mirabile_03B79     HGIQPDGQMPSDKTIGVADDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGMQGFLLFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAIVEPYNSILATHAMIDHSDCAFMVDNEALYDICRRALDIERPTYTNLNRLIGQCVSSLTASLRFDGALNVDFTEFQTNWVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
Hypotrichomonas_acosta               HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTSFKMGINYQPPTVVPGGDLAMVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
Monocercomonas_sp._1                 HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHIPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGLGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
Monocercomonas_sp._2                 HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
Pseudotrichonympha_grassii_03A54     HGIQPDGQMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGLQGFLLFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSVAVVEPYNSVLATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACCCLYRGDVVPKDVGSAIATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
Spirotrichonympha_leidyi_02A66       HGIQPDGQMPSDKTIGVSDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLMFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAIVEPYNSILATHAMIDHSDCAFMVDNEALYDICRRALDIERPTYTNLNRLIGQCVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
Stephanonympha_sp._St10              HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDFGRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
Stephanonympha_sp._St48              HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEEAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
Tetratrichomonas_gallinarum          HGIQPDGQLPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAIVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTGFKMGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
Trichomitus_batrachorum              HGIQPDGQMPSDKTIGICDDAFNTFFSETGAGKHVPRAVMVDLEPTVVDEVRTGTYRQLWHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLTVAEVTNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAIATIKTKRAIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAVAEAWSRLDHKFDLMYAKRAFV
Trichomonas_vaginalis_1              HGIQPDGQLPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAIVEPYNSILATHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTGFKMGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
Trichomonas_vaginalis_2              HGIQPDGQLPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAIIEPYNSILATHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTGFKMGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
Trichonympha_agilis_1                HGIQPDGQMPSDKTIGVEDDAFNTFFQETGAGKHVPRAVFVDLEPTVVDEVRTGTYRRLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGLQGFLMFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPA?QISTAVVEPYNSILACHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTELQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACCLLYRGDVVPKDVGSAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMFSKRAFV
Trichonympha_agilis_2                HGIQPDGQMPSDKTIGVEDDAFNTFFQETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGLQGFLMFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQISTAVVEPYNSILACHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACCLLYRGDVVPKDVGSAVATIKTKRTIQFVDWCLTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMFAKRAFV
Tritrichomonas_foetus_1              HGIQPDGQMPSDKTIGVCDDAFNTFFSETGSGKHVPRAVFIDLEPTCMDEVRTGTYRQLYHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLSDQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYSPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTCLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIVEAWSRLDHKFDLMYAKRAFV
Tritrichomonas_foetus_2              HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFIDLEPTCMDEVRTGTYRQLYHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTCLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
;
END;