#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 20:09 GMT

TreeBASE (cc) 1994-2008

Study reference:
Ohkuma M., Saita K., Inoue T., & Kudo T. 2006. Comparison of four protein phylogeny
and detailed analysis based on glycelaldehyde-3-phosphate dehydrogenase sequences
of parabasalian symbionts in termite guts. Molecular Phylogenetics and Evolution,
null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1521]

BEGIN TAXA;
        TITLE  enolase;
        DIMENSIONS NTAX=19;
        TAXLABELS
            Devescovina_sp._D31
            Holomastigotoides_mirabile_H53
            Hypotrichomonas_acosta_1
            Hypotrichomonas_acosta_2
            Monocercomonas_sp._1
            Monocercomonas_sp._2
            Pseudotrichonympha_grassii_06B34
            Pseudotrichonympha_grassii_07A70
            Spirotrichonympha_leidyi_09B45
            Stephanonympha_sp._St07
            Stephanonympha_sp._St13
            Tetratrichomonas_gallinarum
            Trichomitus_batrachorum_1
            Trichomitus_batrachorum_2
            Trichomonas_vaginalis_1
            Trichomonas_vaginalis_2
            Trichomonas_vaginalis_4
            Trichonympha_agilis
            Tritrichomonas_foetus
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1131]

	TITLE Fig2A;
	LINK TAXA = enolase;
	DIMENSIONS NCHAR=331;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                            10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 ]
[                                             .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         . ]
Devescovina_sp._D31                  VYVKYLNQVLFAGRSSAPSGASTGSNEARELRDSASPRYGGKGTQQAVANVNTLLSPALKGLKLCCLKALDDKIREVDGTALKEKVGGNATTATSFALVESAAALQHIQLFQYLAKQYYG-CQNVPPKFKLPSPYFNILNGGKHAGGNLRFQEFMVSPYRAVPFPDQLRIVAEVYQKLSGLLVKKYGVSAKNLGDEGGFAPPINTPAEALTVTEEAIVAAGYRPGVEVFIGLDAAASEFYDGAKKLYEVEVGVFKTGDEMVEYYRQLTTAHPSIVSIEDGLDEKDYEHWIKLNQAIGGKIQLVGDDLYTTNPATIREGLAGKWCNALLLKV
Holomastigotoides_mirabile_H53       VYVLWLGQVTLVARSSAPSGASTGSNEARELRDGD-KWYGGKGTKKAASNVTTILSPVLKGQKLCCLKELDGIIIKTDGTELKEKVGGNATTATSFALAEAAAAVKGIQLFEYIAAQYYGGCDKVPAKFSLPTPCFNILNGGKHAGGNLKLQEFMVLPGEGVPFPEGLRIVAEVYQVLGKLLVAKYGLSAKNLGDEGGFAPNLNTPEEALSIIEEAIKGAGYTPAKDVFIALDAAASEFYDKAKKTYEVELGVHKTGDQLVQYWAELVAKHPAIKSIEDGLDEKDYEHWVKLNAAIGGKVQLVGDDLYTTNPRTIKKGLEGKWCNALLLKV
Hypotrichomonas_acosta_1             VYADYLGEVIFAGRSSAPSGASTGSGEARELRDAASKRYGGKGTLAASGNVAKLLSPALKGMCFCDLRALDKKICDTDGTILKEVVGGNACTACSFALAEAAANLKGCQLFEYLAEAYWG-KEHVPKKFKLPVPFFNILNGGKHAGGNLKLQEFMVSPKRDVPFPDQLRMVAEVYQKLGSILVKEKGVSAKNLGDEGGFAPLIDTPEEAILLIERAMTEAGYTPAKDMFLAFDAAASEFYDSATKLYEVEVGMKKTGDEMITYWEELIARHPCVYSIEDGLDELDYDNWAKLQARIGSKVQLVGDDLYTTNPRTIKKGLEGKWCNALLLKV
Hypotrichomonas_acosta_2             VYAKRFGDVVFAGRSSAPSGASTGSNEARELRDKDSPRYGGKGTQTAAQNVTTTLSAALRGMPFTDLQNLDNAICAADGTELKENIGGNACTAASFALAEAAASLNNEQLFLYLARQY---QGEVPAKFKLPTPFFNILNGGKHAGGNLKIQEFMISPREDIPFPEQLRMAAEVYQQLGSLLAKEINVSARNPGDEGGFAPALNTPEEALGYIERAIQAAGLKVGEDIRLGLDAAASEFYNSETKTYEIETGMNKTGDEMVEYWKDLVTRHPAIVSIEDGLDEKDYETWIKLNEAIGDHVQLVGDDLYTTNPKTIRQGLDGKWCNALLLKV
Monocercomonas_sp._1                 VYANYCGEVVFAGRSSAPSGASTGSNEARELRDNDPKRYNGKGTLQAAQNVTELITPAVKNLVLNNIHDLDRAIRRVDKPELKEKIGGNATTATSFAFATAGANMNGEELFQYLARQIYP-EESIPTKFKLPTPFFNILNGGKHAGGNLKLQEFMVSPAENIPFPDQLRMVAEVYQKLGGILSKQFGVSAKNLGDEGGFAPLINSPDEALTVIEQAITEAGYKPGEEIRIGLDAAASEFYDKETKLYEVEVGMKKNGDELIQYWADMIEHHPSIVSVEDALDEKDYAHWIKLNKELGSKVQLVGDDLYTTNPNTIKKGLEGNWCNALLLKV
Monocercomonas_sp._2                 VYATQYGQVNLAGRSSAPSGASTGSNEARELRDTDRPRYGGKGTLQASENVSTILSPALHGMSFADLNALDEAIRNADGTELKEKVGGNACTAASFALAEAAAALNGEELFLYLARQFYK-NGEVPTKFKLPTPFFNILNGGKHAGGNLKIQEFMISPNTEIPFPDQLRMAAEIYHKLGAILAQEKGVSAKNLGDEGGYAPLLNTPEEAIEFIERAIKDAGYTPGTDIRLGLDAAASEFYNQETKTYEVEVGVQKTGEEMIQYWQDLVTRHPSIYSIEDGLDEKDYENWIKLNAAIGDKVQLVGDDLYTTNPKTIRAGLEGKWCNALLLKV
Pseudotrichonympha_grassii_06B34     VYVKYLGNEIFAGRSSAPSGASTGSNEARELRDKDPGRYGGKGTLTAADNVTTKLSPVLQGKCLCCIKELDELILQTDGTELKENIGGNATTATSFALAESAAALKGVQLFEHIATNYWG-KGNEPKQYKLPSPCFNILNGGKHAGGKLQIQEFMLTPSRKFKYPDQLRVVAEVYQKLGALLVKEIDISAKNLGDEGGFAPNLDSPDQALDLIQRAVQEAGYVPADDVFYCLDCASSEFYKEG-K-YEVEHEKFLSGDELIEYYNALVTKYPAIISVEDPFDEKDYETWAKWTAQVGDKVQIVGDDLYTTNPKTIALGLEGKWANALLLKV
Pseudotrichonympha_grassii_07A70     VYVSYLGNELFAGRSSAPSGASTGSNEARELRDKDPKRYGGKGTLTAANNVTTKISPVLKGQPLWYIEKLDKLILELDGTELKENIGGNATTATSFALAESAATLQGIQLFEHIATNYWG-KGNEPKKYKLPSPCFNILNGGKHAGGKLQIQEFMLTPARKFSYPDQLRVVAEVYQKLGALLVKEINISAKNLGDEGGFAPNLDSPDQALDLIQRAVQEAGYVPAEDVFYCLDCASSEFYKEG-K-YEVEHEKFLSGDELIQYYNDLVAKYPAIISVEDPFDEKDYETWAKWTAQIGDKVQIVGDDLYTTNPKTIALGLEGKWANALLLKV
Spirotrichonympha_leidyi_09B45       VYAKYLGRVVLAARSSAPSGASTGSNEARELRDGD-KRYGGKGTQKAAHNVDTILSPALAGKGFCSLKELDEKIIEVDGTELKEKVGGNASTATSFALAESAAALGEKQLFEYLACQYYGGCDAKPKKFKLPTPFFNILNGGKHAGGKLKVQEFMVCPGVGIAFPDGLRIVAEVYQKLGGILTAKCGVSARNVGDEGGFAPNLDTPEQALSFIEEAIKAAGYTPGKECCIGMDAAASEFYHKDTKKYEIEEGVFKTGDEMITYWEELLKKHPAICSIEDGLDEKDYEHWVKLEARIGSKCQIVGDDLLTTNWRTIEKAIAGKWCNALLLKV
Stephanonympha_sp._St07              VYVKFLNQVIFAGRSSAPSGASTGSGEARELRDTSSPRYLGKGTATAAANVTARLSPALVGQKLCCIKALDAKIQEVDGTPLKENIGGNATTATSFALAEAGAALQHIQLFQYFAKNYFG-CQNVPAKFKLPSPFFNILNGGKHAGGNLKFQEFMVTPTRSLRYPDQLRIIAEVYQKLGGLLVKKYGVSAKNLGDEGGFAPPLNTPEEALVVIEEAIAAAGYAPGAQIGIALDAAASEFYIEDRQVYEVEVGVFKTGDEMVDYYEALITKHPAIVSIEDGLDEKDYPHWIKLNERIGGRVQLVGDDLYTTNPATIRQGLAGKWCNALLLKV
Stephanonympha_sp._St13              VYVKYLNQVIFAGRSSAPSGASTGSGEARELRDVSSPRYLGKGTATAAANVTTRLSPALTGLKLCCIKALDAKIQEVDGTPLKENIGGNATTATSFALAEAGAALQHIQLFQYFAKNYFG-CGNVPAKFKLPSPFFNILNGGKHAGGNLKFQEFMVTPTRSLPYPDQLRFIAEVYQKLGGLLVKKYGVSAKNLGDEGGFAPPLNTPEEALVVIEEAIAAAGYTPGAQIGIALDAAASEFYIEDRQVYEVEVGVFKTGDEMVDYYEALITKHPAIVSIEDGLDEKDYPHWIKLNERIGGRIQLVGDDLYTTNPATIRQGLAGKWCNALLLKV
Tetratrichomonas_gallinarum          VYANYMGGVRFAGRSSAPSGASTGSGEALELRDKDPKRFFGKGTLTACGNVTNKLSPALKGLPLEDLKAIDRKICETDGTDLKENIGGNACTATSFACAEAAAALNNEQLFLYLARQYYG-AENVPKKFKLPSPFFNILNGGKHAGGKLKLQEFMVNPRKDVPFPDQLRMVAEVYHTPGGLLQKKYGVSAKNLGDEGGFAPLLDTPEEALSVIEEAVKAAGYEPGKDIFFGLDAAASEFYNDEKKQYEVELGVWKTGDEMIQYWEELINKHPAIVSIEDGLDEKDYDHWVKLNQAIGGRCQLVGDDLYTTNPKTIRKGIEGNWCNALLLKV
Trichomitus_batrachorum_1            VYADYLGQVIFAGRSSAPSGASTGVGEAYELRDGDAKRFGGKGTLTASGNVAKLLSPALKGMCFCDLKALDKKICDTDGTPLKKNVGGNACTATSFALAESAANLCGCQLFEYLAKQYHG-AEKVPKKFKLPTPFFNILNGGKHAGGNLKLQEFMASPKPGIPFPDQLRMVAEVYQKLGALLVKTKGVSAKNLGDEGGFAPLIDNPEEAITLIEQAMREAGYEPGVDMFLGLDAAASEFYDKDKKLYEVEVGKFLTAEQMIDYWDQMCTRHKCLVSIEDGLDELDYENWTKMNEKIGKKVQLVGDDLYTTNPSTIRKGLAGKWCNALLLKV
Trichomitus_batrachorum_2            VYAKQFGEVVFAGRSSAPSGASTGSGEAQELRDKDLPRYGGKGTQKAASNVAEFISPAIRGMTFADLSALDGAICQADGTTLKTKIGGNACTAASFALAESAASLLHLQLFQYLAQQFH--QAALPPKFRLPTPFFNILNGGKHAGGKLKVQEFMISPREDAPFPEQLRMADEVYMHLGAILAKEKGVSAKNLGDEGGFAPLLDTPEEALSYIEKAIVEAGLKVGEDIRLGLDAAASEFYDKTTKTYEIEEGVVKTGEEMIQYWAALVEKHPAVVSIEDGLDEQDYENWVKLNEALGSKIQLVGDDLYTTNPATIRKGLEGKWCNALLLKV
Trichomonas_vaginalis_1              VYVKYLGRITLAGRSSAPSGASTGVGEALELRDGDKARYGGKGTQKAAKNVTEVLSPALKGMCFCDFPALDKKICDTDGTVLKKNIGGNACTATSFALAEAGAAVQEIELFQYLAKAFYGGCDKVPKKFKLPSPFFNILNGGKHAGGNLKFQEFMVTPTRKVPFPDQLRMVAEVYQKLGGLLVKKYGLSAKNLGDEGGFAPNLNDPEEALTVIEEAIKAAGYEAGKDIMIGMDVASSEFYDENKKLYEVEVGKFLTADQMIDYFDELLKKHPAIVSIEDALAELDYENWTKLNARLGQRVQLVGDDLYTTNPITIKKGLEGKWCNALLLKV
Trichomonas_vaginalis_2              VYVKYLGRITLAGRSSAPSGASTGVGEALELRDGDKARYGGKGTQKAAKNVTEVLSPALKGMCFCDFPALDKKICDTDGTVLKKNVGGNACTATSFALAEAGAAIQEIELFQYLAKAFYGGCDKVPKKFKLPSPFFNILNGGKHAGGNLKFQEFMVTPTRKVPFPDQLRMIAEVYQKLGGILVKKYGLSAKNLGDEGGFAPNLDSPEEALVVIEEAIKAAGYEAGKDVFIAMDVASSEFYDEEKKLYEVEVGKFLNADQMIEYYEDLLKRHPAIVSIEDALGELDYENWTKLNAKIGDKVQLVGDDLYTTNPITIKKGLEGKWCNALLLKV
Trichomonas_vaginalis_4              VYVKYLGRITLAARSSAPSGASTGVGEALELRDGDKARYGGKGTLKAAANVTEKLSPALKGMCFCDLPALDKKICDTDGTVLKKNIGGNACTATSFALAEAGAAIQEIQLFEYLAKAFYGGADKVPKKFKLPSPFFNILNGGKHAGGNLKFQEFMVTPTRKVPFPDQLRMVAEVYQKLGGLLVKKYGLSAKNLGDEGGFAPNLNDPEEALSVIEEAIKAAGYEAGKDIMIGMDVASSEFYDEEKKLYEVEVGKFLNADQMIDYFDDLLKRHPAIVSIEDALAELDYENWTKLNARLGQRVQLVGDDLYTTNPITIKKGLEGKWCDALLLKV
Trichonympha_agilis                  VYAKHLGEVVLVARSSAPSGASTGSGEAMELRDKDNSKYGGKGTEKASANVAEKISPAVKGEKFCDLTNLDDKICKADGTELKTNIGGNACTAASFALAEAAAKLKGVELFQYLAENYYG-AGKAPKKFSLPAPCFNILNGGKHAGGNLQIQEFMLTPNTKRSYPDQLRVIAEVYQHLGALLVKEHGVSAKNLGDEGGFAPNLDTPAQALDIIERAVKAAGYVPVDDVKYCLDCASSEFYNEETKKYEIEKGSWKTGDELIEYYQDLINKYPAITSIEDPFDEHDYETWTKFTAAVGSKVQIVGDDLYTTNPKTIAKGIAGKWANALLLKV
Tritrichomonas_foetus                VYVHYLGEEQFAGRSSAPSGASTGSNEARELRDTDSKRYGGKGTATAASNVTNVLGPALKGMKLDDLKALDAKICSTDGTELREKVGGNACTATSFALAEAGAALEGVELFQYLARQYWG-AEKVPAKFHIPCPCFNILNGGKHAGGNLKLQEFMAMPSTKYEFPDQLRIVAEVYQKLSSLLQKKYGVSAKNLGDEGGFAPCLDTPDEALDCIEQAVKDAGYEPGVDVNICLDAAASEFYDPEAKLYEVEVGVKKTGDEMIKYWEDLIARHPCIKSIEDGLDEKDYEHWVKLNAAIGSKCQLVGDDLYTTNPNTIRKGLEGKWCNALLLKV
;
END;