#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 17, 2025; 16:50 GMT

TreeBASE (cc) 1994-2008

Study reference:
Stewart J., Kim M., James R., Dumerose R., & Klopfenstein N. 2006. Molecular characterizion
of highly pathogenic F. oxysporum from a conifer nursery. Phytopathology,
null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1549]

BEGIN TAXA;
        TITLE  TaxonLabelSet12426;
        DIMENSIONS NTAX=10;
        TAXLABELS
            Fusarium_melonis_0348
            Fusarium_oxysporum_9302E
            Fusarium_oxysporum_9302G
            Fusarium_oxysporum_9411B
            Fusarium_oxysporum_9447J
            Fusarium_oxysporum_9449C
            Fusarium_oxysporum_9665J
            Fusarium_proliferatum_9223F
            Fusarium_proliferatum_9721B
            Fusarium_redolens_NRRL31255
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1178]

	TITLE Fig_3_Stewart_et_al;
	LINK TAXA = TaxonLabelSet12426;
	DIMENSIONS NCHAR=664;
	FORMAT DATATYPE=Standard SYMBOLS= "A C G T 0 1 2" MISSING=? GAP= -;

MATRIX
[                                       10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660    ]
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Fusarium_melonis_0348           GTGGCA-GTCTTCCAGTATGGGGAGCAAAACAGCTATGGGTCAAGTCCGATATCTTTAGGAGAAG---------TCTTATTGTGAGGGCGAGTTATATAACACCATAGGACTGGCCGTCCCATATGAAAAGATTATATTAGAATTGAATGAAGCTTTGTTTATATATTGATAATGACAGTATATATATCGTGTCTTGACTAATTGCGTGCCAGCAGTCGCGGTAATACGTAAGAGACTAGTGTTATTCATCTTAATTAGGTTTAAAGGGTACCCAGACGGTCAATATAGCTTATAAAATGTTAGTACTTGACTAGAGTTTTATGTAAGAGGGCAGTACTTGAGGAGGAGAGATGAAATTTCGTGATACCAAAGGGACTCTGTAAAGGCGAAGGCAGCCCTCTATGTAAAAACTGACGTTGAAGGACGAAGGCACAGAGAACAAACAGGATTAGATACCCAAGTAGTCTTTGCAGTAAATGATGAATGCCATAGGTTAGATT---GATCAAT---TATAGTCTA------GGGTTAGTCTAGCAAACTAATGCCCTATGATATA--ATTCAAAAT-ATCTGGTCTATAAATGAAAGTGTAAGCATTTCACCTCAAGAGTAATGTGGCAACGCAGGAACTGAAATCA0010010010100001001
Fusarium_oxysporum_9302E        GTGGCAAGTCTTCCAGTATGGGGAGCAAAACAGCTATGGGTCAAGTCCGATATCTTTAGGAGAAG---------TCTTATTGTGAGGGCGAGTTATATAACACCATAGGACTGGCCGTCCCATATGAAAAGATTATATTAGAATTGAATGAAGCTTTGTTTATATATTGATAATGACAGTATATATATCGTGTCTTGACTAATTGCGTGCCAGCAGTCGCGGTAATACGTAAGAGACTAGTGTTATTCATCTTAATTAGGTTTAAAGGGTACCCAGACGGTCAATATAGCTTATAAAATGTTAGTACTTGACTAGAGTTTTATGTAAGAGGGCAGTACTTGAGGAGGAGAGATGAAATTTCGTGATACCAAAGGGACTCTGTAAAGGCGAAGGCAGCCCTCTATGTAAAAACTGACGTTGAAGGACGAAGGCACAGAGAACAAACAGGATTAGATACCCAAGTAGTCTTTGCAGTAAATGATGAATGCCATAGGTTAGATTAATC---AAT---TATAGTCTA------GGGTTAGTCTAGCAAACTAATGACCTATACTATA--ATGAAAAAT-ATCTGGTCTATAAATGAAAGTGTAAGCATTTCACCTCAAGAGTAATGTGGCAACGCAGGAACTGAAATCA0010000110100001001
Fusarium_oxysporum_9302G        GTGGCAAGTCTTCCAGTATGGGGAGCAAAACAGCTATGGGTCAAGTCCGATATCTTTAGGAGAAG---------TCTTATTGTGAGGGCGAGTTATATAACACCATAGGACTGGCCGTCCCATATGAAAAGATTATATTAGAATTGAATGAAGCTTTGTTTATATATTGATAATGACAGTATATATATCGTGTCTTGACTAATTGCGTGCCAGCAGTCGCGGTAATACGTAAGAGACTAGTGTTATTCATCTTAATTAGGTTTAAAGGGTACCCAGACGGTCAATATAGCTTATAAAATGTTAGTACTTGACTAGAGTTTTATGTAAGAGGGCAGTACTTGAGGAGGAGAGATGAAATTTCGTGATACCAAAGGGACTCTGTAAAGGCGAAGGCAGCCCTCTATGTAAAAACTGACGTTGAAGGACGAAGGCACAGAGAACAAACAGGATTAGATACCCAAGTAGTCTTTGCAGTAAATGATGAATGCCATAGGTCAGATAACCAGTTAATGTTTATAGTCTAATA---GGGTTAGCCTAGCAAACTAATGACATAGACTAT-CCATTAAAAAT-ATTTGGTCTATAAATGAAAGTGTAAGCATTTCACCTCAAGAGTAATGTGGCAACGCAGGAACTGAAATCA0010000000010100001
Fusarium_oxysporum_9411B        GTGGCA-GTCTTCCAGTATGGGGAGCAAAACAGCTATGGGTCAAGTCCGATATCTTTAGGAGAAG---------TCTTATTGTGAGGGCGAGTTATATAACACCATAGGACTGGCCGTCCCATATGAAAAGATTATATTAGAATTGAATGAAGCTTTGTTTATATATTGATAATGACAGTATATATATCGTGTCTTGACTAATTGCGTGCCAGCAGTCGCGGTAATACGTAAGAGACTAGTGTTATTCATCTTAATTAGGTTTAAAGGGTACCCAGACGGTCAATATAGCTTATAAAATGTTAGTACTTGACTAGAGTTTTATGTAAGAGGGCAGTACTTGAGGAGGAGAGATGAAATTTCGTGATACCAAAGGGACTCTGTAAAGGCGAAGGCAGCCCTCTATGTAAAAACTGACGTTGAAGGACGAAGGCACAGAGAACAAACAGGATTAGATACCCAAGTAGTCTTTGCAGTAAATGATGAATGCCATAGGTTAGATTGG---TCAAT---TATAGTCTA------GGGTTAGTCTAGCAAACTAATACCCTATGCTATA--ATCCT-AAT-ATCTGGTCTATAAATGAAAGTGTAAGCATTTCACCTCAAGAGTAATGTGGCAACGCAGGAACTGAAATCA1010001010100001101
Fusarium_oxysporum_9447J        GTGGCA-GTCTTCCAGTATGGGGAGCAAAACAGCTATGGGTCAAGTCCGATATCTTTAGGAGAAG---------TCTTATTGTGAGGGCGAGTTATATAACACCATAGGACTGGCCGTCCCATATGAAAAGATTATATTAGAATTGAATGAAGCTTTGTTTATATATTGATAATGACAGTATATATATCGTGTCTTGACTAATTGCGTGCCAGCAGTCGCGGTAATACGTAAGAGACTAGTGTTATTCATCTTAATTAGGTTTAAAGGGTACCCAGACGGTCAATATAGCTTATAAAATGTTAGTACTTGACTAGAGTTTTATGTAAGAGGGCAGTACTTGAGGAGGAGAGATGAAATTTCGTGATACCAAAGGGACTCTGTAAAGGCGAAGGCAGCCCTCTATGTAAAAACTGACGTTGAAGGACGAAGGCACAGAGAACAAACAGGATTAGATACCCAAGTAGTCTTTGCAGTAAATGATGAATGCCATAGGTCAGATAACCAGTTAATGTTTATAGTCTAATA---GGGTTAGCCTAGCAAACTAATGACATAGACTAT-CCATTAAAAAT-ATTTGGTCTATAAATGAAAGTGTAAGCATTTCACCTCAAGAGTAATGTGGCAACGCAGGAACTGAAATCA1010000000010100001
Fusarium_oxysporum_9449C        GTGGCAAGTCTTCCAGTATGGGGAGCAAAACAGCTATGGGTCAAGTCCGATATCTTTAGGAGAAG---------TCTTATTGTGAGGGCGAGTTATATAACACCATAGGACTGGCCGTCCCATATGAAAAGATTATATTAGAATTGAATGAAGCTTTGTTTATATATTGATAATGACAGTATATATATCGTGTCTTGACTAATTGCGTGCCAGCAGTCGCGGTAATACGTAAGAGACTAGTGTTATTCATCTTAATTAGGTTTAAAGGGTACCCAGACGGTCAATATAGCTTATAAAATGTTAGTACTTGACTAGAGTTTTATGTAAGAGGGCAGTACTTGAGGAGGAGAGATGAAATTTCGTGATACCAAAGGGACTCTGTAAAGGCGAAGGCAGCCCTCTATGTAAAAACTGACGTTGAAGGACGAAGGCACAGAGAACAAACAGGATTAGATACCCAAGTAGTCTTTGCAGTAAATGATGAATGCCATAGGTTAGATTGG---TCAAT---TATAGTCTA------GGGTTAGTCTAGCAAACTAATACCCTATGCTATA--ATCCT-AAT-ATCTGGTCTATAAATGAAAGTGTAAGCATTTCACCTCAAGAGTAATGTGGCAACGCAGGAACTGAAATCA0010001010100001101
Fusarium_oxysporum_9665J        GTGGCAAGTCTTCCAGTATGGGGAGCAAAACAGCTATGGGTCAAGTCCGATATCTTTAGGAGAAG---------TCTTATTGTGAGGGCGAGTTATATAACACCATAGGACTGGCCGTCCCATATGAAAAGATTATATTAGAATTGAATGAAGCTTTGTTTATATATTGATAATGACAGTATATATATCGTGTCTTGACTAATTGCGTGCCAGCAGTCGCGGTAATACGTAAGAGACTAGTGTTATTCATCTTAATTAGGTTTAAAGGGTACCCAGACGGTCAATATAGCTTATAAAATGTTAGTACTTGACTAGAGTTTTATGTAAGAGGGCAGTACTTGAGGAGGAGAGATGAAATTTCGTGATACCAAAGGGACTCTGTAAAGGCGAAGGCAGCCCTCTATGTAAAAACTGACGTTGAAGGACGAAGGCACAGAGAACAAACAGGATTAGATACCCAAGTAGTCTTTGCAGTAAATGATGAATGCCATAGGTTAGATT---GATCAAT---TATAGTCTA------GGGTTAGTCTAGCAAACTAATGCCCTATGATATA--ATTCAAAAT-ATCTGGTCTATAAATGAAAGTGTAAGCATTTCACCTCAAGAGTAATGTGGCAACGCAGGAACTGAAATCA0010010010100001001
Fusarium_proliferatum_9223F     GTGGCAAGTCTTCCAGTATGGGGAGCAAAACAGCTATGGGTCAAGTCTGATATCTTTAGGAGGGGCGAAGCTCCTCTTATTGTGAGGGCGAGTTATATAACACCATAGGACTGGCCGTCCCATATGAAAAGATTATATTAGAATTGAATGAAGCTTTGTTTATATATTGATAATGACAGTATATATATCGTGTCTTGACTAATTGCGTGCCAGCAGTCGCGGTAATACGTAAGAGACTAGTGTTATTCATCTTAATTAGGTTTAAAGGGTACCCAGCCGGTCAATATAGCTTATAAAATGTTAGTACTTGACTAGAGTTTTATGTAAGAGGGCAGTACTTGAGGAGGAGAGATGAAATTTCGTGATACCAAAGGGACTCTGTAAAGGCGAAGGCAGCCCTCTATGTAAAAACTGACGTTGAAGGACGAAGGCACAGAGAACAAACAGGATTAGATACCCAAGTAGTCTTTGCAGTAAATGATGAATGCCATAGGTTAGATGGG---TGGGC-----TCGTCTAGTT---GAGTTAGTTTAGCAAACTAATGATCTAGACGAGCCCACCGTA--T-ATTTGGTCTATAAATGAAAGTGTAAGCATTTCACCTCAAGAGTAATGTGGCAACGCAGGAACTGAAATCA0000001001001000011
Fusarium_proliferatum_9721B     GTGGCAAGTCTTCCAGTATGGGGAGCAAAACAGCTATGGGTCAAGTCTGATATCTTTAGGAGGGGCGAAGCTCCTCTTATTGTGAGGGCGAGTTATATAACACCATAGGACTGGCCGTCCCATATGAAAAGATTATATTAGAATTGAATGAAGCTTTGTTTATATATTGATAATGACAGTATATATATCGTGTCTTGACTAATTGCGTGCCAGCAGTCGCGGTAATACGTAAGAGACTAGTGTTATTCATCTTAATTAGGTTTAAAGGGTACCCAGACGGTCAATATAGCTTATAAAATGTTAGTACTTGACTAGAGTTTTATGTAAGAGGGCAGTACTTGAGGAGGAGAGATGAAATTTCGTGATACCAAAGGGACTCTGTAAAGGCGAAGGCAGCCCTCTATGTAAAAACTGACGTTGAAGGACGAAGGCACAGAGAACAAACAGGATTAGATACCCAAGTAGTCTTTGCAGTAAATGATGAATGCCATAGGTTAGATGGG---TGGGC-----TCGTCTAGTT---GAGTTAGTTTAGCAAACTAATGATCTAGACGAGCCCACCGTA--T-ATTTGGTCTATAAATGAAAGTGTAAGCATTTCACCTCAAGAGTAATGTGGCAACGCAGGAACTGAAATCA0000001001001000011
Fusarium_redolens_NRRL31255     GTGGCAAGTCTTCCAGTATGGGGAGCAAAAC-GCTATGGGTCAAGTCCGATATCTTTAGGAGAAG---------TCTTATTGTGAGGGCGAGTTATATAACACCATAGGACTGGCCGTCCCATATGAAAAGATTATATTAGAATTGAATGAAGCTTTGTTTATATATTGATAATGACAGTATATATATCGTGTCTTGACTAATTGCGTGCCAGCAGTCGCGGTAATACGTAAGAGACTAGTGTTATTCATCTTAATTAGGTTTAAAGGGTACCCAGACGGTCAATATAGCTTATAAAATGTTAGTACTTGACTAGAGTTTTATGTAAGAGGGCA-TACTTGAGGAGGAGAGATGAAATTTCGTGATACCAAAGGGACTCTGTAAAGGCGAAGGCAGCCCTCTATGTAAAAACTGACGTTGAAGGACGAAGGCACAGAGAACAAACAGGATTAGATACCCAAGTAGTCTTTGCAGTAAATGATGAATGCCATAGGTT-GATTAATAGTTAATGTTTATAGGCTAATTATTGGCTTAGCTTAGCAAACTAATGCTATAGACTAGA-CATTAAAAATTATTTGGTCTATAAATGAAAGTGTAAGCATTTCACCTCAAGAGTAATGTGGCAACGCAGGAACTGAAATCA0111100000000010000
;
END;