#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 0:32 GMT TreeBASE (cc) 1994-2008 Study reference: Nabeel-shah S., Ashraf K., Pearlman R.E., & Fillingham J.S. 2014. Molecular evolution of NASP and conserved histone H3/H4 transport pathway. BMC Evolutionary Biology, 14(139). TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15931] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=52; TAXLABELS Albugo_laibachii Apis_florea Arabidopsis_thaliana Bombus_terrestris Bos_taurus Caenorhabditis_brenneri Caenorhabditis_briggsae Caenorhabditis_elegans Caenorhabditis_remanei Candida_albicans Capsella_rubella Cicer_arietinum Ciona_intestinalis Coccidioides_immitis Cryptococcus_gattii Danaus_plexippus Danio_rerio Dictyostelium_fasciculatum Drosophila_erecta Drosophila_melanogaster Drosophila_sechellia Gallus_gallus Halocynthia_roretzi Homo_sapiens Ichthyophthirius_multifiliis Maylandia_zebra Megachile_rotundata Mus_musculus Neospora_caninum Neurospora_crassa Orcinus_orca Oreochromis_niloticus Paramecium_tetraurelia Plasmodium_yoelii Saccharomyces_cerevisiae Salmo_salar Schizosaccharomyces_japonicus Schizosaccharomyces_pombe Taeniopygia_guttata Takifugu_rubripes Tetrahymena_thermophila Tetrapisispora_phaffii Thalassiosira_pseudonana Theobroma_cacao Toxoplasma_gondii Tribolium_castaneum Trichosporon_asahii Trypanosoma_brucei Trypanosoma_cruzi_Excavata Xenopus_laevis Xenopus_tropicalis choanoflagellida_Salpingoecidae ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M22743] TITLE NASP_TPR2; LINK TAXA = Taxa; DIMENSIONS NCHAR=119; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 ] [ . . . . . . . . . . . ] Albugo_laibachii APIYYEYGNALL-SLVEGTANVFGNVLDGS--------------------------------EKHSDKGTDHGQEEKSSQFRNESDDNPIEENVV--KDDLELAWEMLEVARVIYTRH- Apis_florea GEPYLLYGRALL-GLAREEAGVLGGGVPGTEE-TEED----DEEDEEEAEDEKLSNIDEKEDNGPSCSSDHNGDVKKNGENDGEDIGNEDEEDE---VNNLQVAWEVLELAKLVLLKR- Arabidopsis_thaliana INAYYRYGLALL-AKAQAEADPLGNMPKKEGEVQQES----SNGESLAPSVVSGDPERQGSSGQEGSGGKDQGEDGEDCQDDDLSDADGDADED---ESDLDMAWKMLDIARVITDKQ- Bombus_terrestris GEPYLLYGRALL-GLAREEAGVLGGGVPGTEE-TEED----DEEDEEEAEDEKLSNVDEKEENGPSCSTEQNGVVEENGENDGEDIEKEDEEDE---VNNLQVAWEVLELAKLVLLKR- Bos_taurus GEAFFFYGKSLL-ELARMENGVLGNALEGVHV-EEEE----GEKTEEESLVENNDNIDETEGSEEEDKENDKAEETLNDSALENKSLQENEEEE---IGNLELAWDMLDLAKIIFKRQ- Caenorhabditis_brenneri FDAYYFYGMATL-ELAKVETQLLKN----------------DKDKELDREEEEDTCADEKA-TESKENGDESDEEE----------GEESSEED---DDNMRLAWELLETCRCIAIVK- Caenorhabditis_briggsae YEYYYYYGMATL-ELGKIQGQVFNAPN--------------EKEDNGEAQNSAAGTITNEKGGDGENSEKEDGEES-------------GDEED---DDTMKLAWEVLENARCIAMAK- Caenorhabditis_elegans FDSLYYYGMATL-ELAKEESQLLKGP---------------GEKESGDEEQAG---------NSDDKTDEENGETEKEDGEE----SGEEEDDD---DDTMKLSWEILETARCIAAAK- Caenorhabditis_remanei FDACYYYGMASL-EVAKLESALLKNPD--------------EKQRNGVSGDEEAASGDEEEKAEDENDDGSEKED-----------GEESEDDD---EDSMKLAWELLETARCTAAAK- Candida_albicans ADLLFLYGKAVF-QSGVSKSEVFGGKP------AEPE----VETENSESKEEESKPETDKTDTFQFYADGDGEEEDGEENEEPNEDENNDEDAN---KSDFEVAWELLDLARALFEEK- Capsella_rubella VNAYYRYGSALL-EKAQAEADPLGNVPKKEGEVQQES----SSKDDSVKNTVNGESLAASVVGQEGAGGIEQGEDGENCHDDDLSDADGDEDDS-----DLDMAWKMLDIARAITDKQ- Cicer_arietinum VHTYYKYGCALL-YKAQEEADPLGVVPKKQDVPQHGS----EKDGSVKSAMNAESSTASFPNRESEVVNATSGKNDQEDGGDSDAEDLAEGDED---ESDLDLAWKMLDIARAIVEKQ- Ciona_intestinalis AESFYFYGKALL-ELARVENGVLGNALKGVPQVEEAS----SESEGEGNQFEKTKNLPVEKRPADTSDVPMEADEPSTSGGVKDEDVKDEDTEDPDDVPNMQLAWEMLELAKVLYQKK- Coccidioides_immitis ADLLYSYGRCLY-HVAVSKSDVFGSKAAIQNVVESSKPRGKESSNQPQFFMPQSDKNDTSMEKTYFQFNGDENFDDDDEDEEDAGDTGREALVE---DDDFENAFETLDMARVLLSRQ- Cryptococcus_gattii APLLLAYGKALY-DLASSQASVMGREEPVRQE-DDVP----AETNNPNFVFSGDAPSDDEGEDEPEPEVEPQASSSSAPAPAPDAAEGDEMEEL---EDDYNAAWEVLDVARTIYQKI- Danaus_plexippus AEAYLWYGKSLL-GLSREENGYLGDGVAGGNNEDGDN----EEENGEENAEAEQKNGEIATEEPGSSTENEEKPGTSNGDVNDDSVVNLDNEDD---VDNLQLAWEMLDLSRNILQKR- Danio_rerio GEAFFFCGKALL-ELARMENTVLGNALEGVPE-ESSE----EGEKQDDSKIESADNLDEKTRGDDDGDEDEDDDDDDDEDAEGDAKDKESEEDE---VGNLQLAWEMLEVAKVIYKRK- Dictyostelium_fasciculatum APIYIKYGRALLFSYKVNESDVLGSKL------DNNK----EGAQEGEPDEAGEDELDKKEASSSDGEDTSTSTSNATTSTTTTTGEKKEEGDK---AETLEVAWDVLELARVIYEKN- Drosophila_erecta GQPLLLYAKALI-AMALDENKVIDVPDEAADD-DDED----VDDDEEESAEDGPAKKEEKKKNDDERPSTSNGEVTASCSNGAAAAGEEEPEEEEGVSGSLQLAWEILEAAAQIFSRQ- Drosophila_melanogaster GQPLLLYAKALI-AMALDENKVIDVPDEAADD-DDED----VDDDEEESAEDGAAKKEEKKDNDDERPSTSNGEVTASCSNGAAPAVEEEPEEEEGVSGSLQLAWEILEAAAQIFSRQ- Drosophila_sechellia GQPLLLYAKALI-AMALDENKVIDVPDEAADD-DDED----VDDDEEESVEDGAAKKEEKKDNDDERPSTSNGEVTASCSNGAAAAGEEEPEEEEGVSGSLQLAWEILEAAAQIFSRQ- Gallus_gallus AEAFFYYGKSLL-ELARMENGVLGNALEGVQVEEE------GEKAEDDSALPAVDET-----EESEEEDKENDKAEDDKENELAVEDKESEEEE---IGNLELPWDMLELAKVIYKRQ- Halocynthia_roretzi CEAYYYYGVSLL-ELARLENGVLGNALKGVPEEDADG----DSDQEQEQFEKPDLPETEREKSSDKPVESSNTEEPGTSGTSASSSKENESEEDPDDISNMQLAWEMLELAKVLYKKH- Homo_sapiens GEAFFFYGKSLL-ELARMENGVLGNALEGVHV-EEEE----GEKTEDESLVENNDNIDETEGSEEDDKENDKTEEMPNDSVLENKSLQENEEEE---IGNLELAWDMLDLAKIIFKRQ- Ichthyophthirius_multifiliis SKYYYYYGDMLLTKQDQEEDEN-----------QNEN----KNENENQNENENQINQDEKIITILYKDNGVQIQEEKINGNQEEQKEQNLVQQK---IDDLQLAWENLELCKKIIYKN- Maylandia_zebra GEAFFLCGKSLL-ELARMENSVLGNALEGVP--EESE----EEEQPSSSNVESPDNLDDD--DDDDDDDDDDDDDDGEKNGQDKASSYRTEEEE---VGNLQLAWEMLEVAKVIYKRK- Megachile_rotundata GEPYLLYGRALL-GLAREEAGVLGGGVPGNED-SVED----DEEDEEEVEDEKLSNVDEKEENGPSCSTTEQNGDAKENGDDGEDIGKEDEDDE---VNNLQVAWEVLELAKLVLLKR- Mus_musculus GEAFFFYGKSLL-ELARMENGVLGNALEGVHV-EEEE----GEKTEDESLVENNDNVDETEGSEEEDRENDKAEETPNESVLEKKSLQENEEEE---IGNLELAWDMLDLAKIIFKRQ- Neospora_caninum STYYLWFGDALL-TKEEQNAELFQF--------DKTK----QEAAESGAPSSGAESSASSSSASGSSSSTEKGAHSEEEVPGGNAAGK---------VSDEELAFEMLEMAKRCLLKK- Neurospora_crassa AEILFLYGRALF-KVGQSKSDVLGGRA------PEPK----PEKKAAKSKKQKKAATEEKEAEGDENFDDSDKEEEDDDEDAE---EGEEEDED---DDDLAVAFQVLDLARVLFEKKL Orcinus_orca GEAFFFYGKSLL-ELARMENGVLGNALEGVHV-EEEE----GEKTEEETLVENNDNIDETEGSEEEDKENDKAEETPNDSLLENKSLQENEEEE---IGNLELAWDMLDLAKIIFKRQ- Oreochromis_niloticus GEAFFWYGKALL-DLARMENSVLGNALEGV---PEEE----EEEKPKDSNVESTENVDEKTREEEGGDDVEMEGDAEEQGEGDSTGEKDSDDEE---VGHLQLAWEMLEVAKVIYKRK- Paramecium_tetraurelia AEYYYMYGTIIV-LKLSEQQDVFG-----------------QRTREAENNALGVQDPEDTQ-SENEGEQIEDGDIEEEHKVQENKPHENIED-----LDDFHIAWENLEVARVILEKE- Plasmodium_yoelii REYYLCFADALL-TKEEEKNDLF-------------------------------EFLKKKKSEVTEDEDGSNKEE----------------------VTDEQLAFEMFEFSRKCYEML- Saccharomyces_cerevisiae PELFTIFAQAVYNMEVQNSGNLFGDALLAGDDGSGSE----SESEPESDVSNGEEGNENGQTHELANFSPANEHDDEIEDVSQLRKSGFHIYFE---NDLYENALDLLAQALMLLGRP- Salmo_salar GEAFFLCGKALL-ELARMENGVLGNALTGVPE-EEEG----EEEKPKDSNIESTDNVDEKTRTKESSDNPEEEDGDVEDGEEKEDIPEDSDDEE---VGNLQLAWEMLEVAKVIYKRK- Schizosaccharomyces_japonicus RNVLWLYGRTLF-EIALSKSQVLGGGITPAIE-EQQQ----KETDSGPTVVGSFAFTGDKLETATSEAASSNGSEKTEAATAASPTPAAAVAAE----DDFGLAWEVLDLCRVLQTRA- Schizosaccharomyces_pombe RNVLWLYGKSLF-QIAIENSQVLGNALGAKESVSQAT----ESFEEPEAIGSFTFSGQKIENYTVNEENSSIAHPEKESEEKETNEASPASEED---EDDFNVAWEVLDLTRVMQSKA- Taeniopygia_guttata AEAFFYYGKSLL-ELARMENGVLGNALEGVQ--VEEE----GEKAEDDSALPAADET-----EESEEEDKENDKADDDKENELTVEDKESEEDE---IGNLELAWDMLELAKVIYKRQ- Takifugu_rubripes GEALFLCGKSLL-ELARMENSVLGNALEGVP--EESE----GEEQPTDSKIESADNLDEKTRAEEEDEGAEGNDDDSDEDDEAGEGNGQAKEEE---VGNLQLAWEMLEVAKVIYKRK- Tetrahymena_thermophila SKYFFFYGDMLL-SKLENNPDVFGDKAQKKLD-NQTT----EEVEKNPNQMASEEASEQKMVRDETNAPQNNEENQTEENNLPIGKVTMEKSDP---IDDLQLAWENLELSRKIYNQE- Tetrapisispora_phaffii PDHVMLLASCLY-QLGVEKNDMFGGGMDDSEGEDDDG----QNEDWVSDDGQDDEDADNKDTSELEQDNSDNENHDPEDDIDEEGLISYVDYLE---GDHFQNTLELLQVARIIYMEN- Thalassiosira_pseudonana APLYYLYGTTLL-YLVEESDVMMNG--------KGEI----QVNDNEDDNDE----------SPPAAHSPQDEEEE----------EEEAPSDP---AEDLQIAWENLETARSIMSKM- Theobroma_cacao LKAYYLYGRALL-YKAQEETDPLVSVPKKEGETQQGS----NKEESVKSAVNGESSVASVSSTQHEGATKDGGRDEEEEDEDSDTDDVAEADED---DSDLDLAWKMLDVARAIADKQ- Toxoplasma_gondii STFYLWFGDALL-TKEEQNAELFQF--------DKAK----QDAESGAAAASSAAPASSSS-ATSSSSSTDKGTERHEEEVPGGNAAGKVSDEE--------LAFEMLEMAKQCLLKK- Tribolium_castaneum GDVYLYYGKSLL-ELSRKESGPLGDGVLKNVEEESET----EDVEENEAGEEESKPVNGETPEEEDDKPPAEGETDQKVEESGSSEEKKEGEETEDELTDLQVAWEVLELAKRIFTNR- Trichosporon_asahii APLLLSYGKALY-ELALSQQGVMGREE------VAKS----TNPAAAEPSAPAAKGNFVFEGGDDGDEEEEGEGEEQEGEGDGKGQQEEGEEEP---EDDFNAAWEVLDVARTIYTRE- Trypanosoma_brucei GIYFLDYGLSQL-RMIQSASSM----------------------------------------------------------------EAALDPLD---HDALEACFTNLDVARVCFQKQ- Trypanosoma_cruzi_Excavata GVYFLDYGLSQL-RVLQSKSTV----------------------------------------------------------------EAALQPLD---QDALEACFINLDVARVCFQKQ- Xenopus_laevis AEAFYSYGMSLL-ELARLENGVLGNALEGMPE-DDEE----EAEKEEDPNIPSADNLDEKERPEKMEEEEEGEDSEENEDENEGTEEKETEEED---VGNLQLAWEMLDLCKIIFKRQ- Xenopus_tropicalis ADAFYSYGMSLL-ELARMENGVLGNALEGM---PEDE----EDGEKEDPNIPSADNLDEKEREGEEEEGEDSEENDEGTEENEGTEEKETEEED---VGNLQLAWEMLDLCKLIFKRQ- choanoflagellida_Salpingoecidae ARVYQLYGLCLI-ASARKEAPMMAAEDLMRLADPSAQ----AAAPSAAPAASAASASSTSKGLDDDDEGDGDEKAGDNQQEGQAAEGDGEQEDD---ASLVQVGWECLECARVIYSRL- ; END;