#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 0:30 GMT

TreeBASE (cc) 1994-2008

Study reference:
Nabeel-shah S., Ashraf K., Pearlman R.E., & Fillingham J.S. 2014. Molecular evolution
of NASP and conserved histone H3/H4 transport pathway. BMC Evolutionary Biology,
14(139).

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S15931]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=52;
        TAXLABELS
            Albugo_laibachii
            Apis_florea
            Arabidopsis_thaliana
            Bombus_terrestris
            Bos_taurus
            Caenorhabditis_brenneri
            Caenorhabditis_briggsae
            Caenorhabditis_elegans
            Caenorhabditis_remanei
            Candida_albicans
            Capsella_rubella
            Cicer_arietinum
            Ciona_intestinalis
            Coccidioides_immitis
            Cryptococcus_gattii
            Danaus_plexippus
            Danio_rerio
            Dictyostelium_fasciculatum
            Drosophila_erecta
            Drosophila_melanogaster
            Drosophila_sechellia
            Gallus_gallus
            Halocynthia_roretzi
            Homo_sapiens
            Ichthyophthirius_multifiliis
            Maylandia_zebra
            Megachile_rotundata
            Mus_musculus
            Neospora_caninum
            Neurospora_crassa
            Orcinus_orca
            Oreochromis_niloticus
            Paramecium_tetraurelia
            Plasmodium_yoelii
            Saccharomyces_cerevisiae
            Salmo_salar_For_tpr4
            Schizosaccharomyces_japonicus
            Schizosaccharomyces_pombe
            Taeniopygia_guttata
            Takifugu_rubripes
            Tetrahymena_thermophila
            Tetrapisispora_phaffii
            Thalassiosira_pseudonana
            Theobroma_cacao
            Toxoplasma_gondii
            Tribolium_castaneum
            Trichosporon_asahii
            Trypanosoma_brucei
            Trypanosoma_cruzi_For_tpr4
            Xenopus_laevis
            Xenopus_tropicalis
            choanoflagellida_Salpingoecidae
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M22746]

	TITLE NASP_TPR4;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=34;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                           10        20        30    ]
[                                            .         .         .    ]
Albugo_laibachii                    ADLYCCLAISCIYQDPSQPQINLDQGCTDEAPVE
Apis_florea                         AEIHYQLALAHSLGNEFDASIEEFNKATELLETR
Arabidopsis_thaliana                AELNFRICICLETGCQPKEAIPYCQKALLICKAR
Bombus_terrestris                   AEIHYQLALAHSLGNEFDASIEEFNKATELLDSR
Bos_taurus                          AETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEKR
Caenorhabditis_brenneri             SQTYILMANACSNAMNFEEAVALYQKTKESLLHR
Caenorhabditis_briggsae             AQTYILMADACTSGMNYDEAINYFEKTKETLKSR
Caenorhabditis_elegans              AQTYILIGNACASDANYDETVQYFGKTKDVLIAR
Caenorhabditis_remanei              AQTYILMASACSSSMNFTDAVTFYKRTKDTLVAR
Candida_albicans                    SESHYKLALALEFQSDDKNAAEQMKLAIESVERR
Capsella_rubella                    AELNFRICICLETGCQPKEAMPYCQKAMLICKAR
Cicer_arietinum                     ADLNFRICLCLEVGSRPEEAVAYCEKATSVCKAR
Ciona_intestinalis                  AETHYNLGLAYTFDKRYDNALEHYTASLNVLDAR
Coccidioides_immitis                AECHYKLSLALEFSSVRAEAAKHMEAAIQCCKLR
Cryptococcus_gattii                 ASAHYQLATALEFTPSRTSALTHVESALSSLVRR
Danaus_plexippus                    AETHYQIGLANSLASNFEDAITHFKNAANILETR
Danio_rerio                         TETHYQLGTTYSYTTQYNQAIEHFSNSIKVIESR
Dictyostelium_fasciculatum          AEVYYYIGMVYQIKNDAKFAEDSYKKAIEILTGA
Drosophila_erecta                   AELHYKIGLTYLMQQLNKEGATALRHSSVLIEEE
Drosophila_melanogaster             AELHYKIGLTYLMQQLNKEGATALRQSSVLIEEE
Drosophila_sechellia                AELHYKIGLTYLMQQLNKEGATALRQSSVLIEEE
Gallus_gallus                       AESHYQLALAYHYNSQFDEAVLQFGKSVEVIDKR
Halocynthia_roretzi                 AETYYNLGLAYSFEKRYDNALEHYQSALDVLEAR
Homo_sapiens                        AETHYQLGLAYGYNSQYDEAVAQFSKSIEVIENR
Ichthyophthirius_multifiliis        SSIYFQLGNSLLYENKEFCEENSLKNFIQSAQIL
Maylandia_zebra                     AETHYHVATTLCYMDQYSQAIQHYNSSIKVIETR
Megachile_rotundata                 AEIHYQLALAHSLGNEFDASIEEFNKATELLEAR
Mus_musculus                        AETHYQLGLAYGYNSQYDEAVAQFGKSIDVIEKR
Neospora_caninum                    AQATFFSGKKKAALDVFKRTLSIGKQIKEGELGM
Neurospora_crassa                   AEAHFKLSLALEFASVTDEAAAELEAAIASTKLK
Orcinus_orca                        AETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEKR
Oreochromis_niloticus               AETHYQLGVTYSLNTQYSEAIESLKSSISIIKNR
Paramecium_tetraurelia              AETYFFLGNVTLYNYKEGKEEEALGFYLKALQIL
Plasmodium_yoelii                   SQSYMFCGKRKEAVEYFEKVKKILLDVRQKTTPL
Saccharomyces_cerevisiae            IQAEFLVCDALRWVDQVKDKLKRFKHAKALLEKH
Salmo_salar_For_tpr4                AETHYQLGLTLCSDCQYSQAIEHFNHSARVIKSR
Schizosaccharomyces_japonicus       SEAHYKLALALEFTALEKEALKHVEAAADIIQHV
Schizosaccharomyces_pombe           SEAHYKLALALEFTNPKSRACEHVEKAAEILKNV
Taeniopygia_guttata                 AESHYQLALAYHYNSDFDEAVLQFGKSMEVIDKR
Takifugu_rubripes                   AETHYHVATTLCYMDKYSQAIQHYNSSIEVIEKR
Tetrahymena_thermophila             SSIFFQLGNAVLYENKEYCEEEGLKNFIDSAQIL
Tetrapisispora_phaffii              LTTSLKLIEALRWLTDTKDKHKEILNSTQILLKK
Thalassiosira_pseudonana            ADAHFSLAQAYVEAPNSQARMEDEAAGIEKSCDH
Theobroma_cacao                     AELNFRICMCLEIGSKPQEAIPYCQKAISVCRSR
Toxoplasma_gondii                   AQATFFSGKKKAALDVFKRTLAIGKKIKDGFLGM
Tribolium_castaneum                 AETCYKLGGAYSTNGQIDEAIASFNSSYEYLQNK
Trichosporon_asahii                 ASAEYQLGTALEFTSGRPAALVHVQAALDGFKAR
Trypanosoma_brucei                  AAVLYEIADCYMKEGDFEGAEERFIKAIEEIEKF
Trypanosoma_cruzi_For_tpr4          AAVLYGIADCYMKEGDFEGAEERFQAALDELASF
Xenopus_laevis                      AETHYHLGLAYQYSSKHEEAISHFTQSIGVIEKR
Xenopus_tropicalis                  AETNYHLGLAYQYSSKHEDAISHFTQSVGVIEKR
choanoflagellida_Salpingoecidae     AQALFQLGIAHRQLKQSQKAIAAFSEAVDILDAL
;
END;