#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 18, 2025; 21:25 GMT TreeBASE (cc) 1994-2008 Study reference: Igea J., Aymerich P., Bannikova A.A., Gosálbez J., & Castresana J. 2015. Multilocus species trees and species delimitation in a temporal context: application to the water shrews of the genus Neomys. BMC Evolutionary Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16177] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=14; TAXLABELS Ailuropoda_melanoleuca Bos_taurus Canis_familiaris Crocidura_russula Equus_caballus Erinaceus_europaeus Felis_catus Homo_sapiens Macaca_mulatta Myotis_lucifugus Neomys_fodiens Pteropus_vampyrus Sorex_coronatus Tursiops_truncatus ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23446] TITLE Neomys_CST6_intron_1; LINK TAXA = Taxa; DIMENSIONS NCHAR=454; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Bos_taurus GTGCGGCCGACGGGGGGAGGGGAGGCGAGCGCGGCCCCA-GCCGGGCCCAGATGGAGGGGGCGACT-AGAGTAATCAGGGCATCTTAATACAACATTTTCAAAATCCAATTAATGTCAAAAGTCCATGCGGAGCAGAATCTCAGAATTTCAATAAGGTTCAACCCTGGGCCTGG-----------------------------TCCTGAGGCGGATTGGGGTGCGAGGTGAGGGAGAAGGGGCAGC----------GTGTGGACTTGGTCTCAGGCTCCTGCCTGGCCCAGGCTCTGCCCGCCTCACCACAGGACCCCCACCAGAACTCCCCATCTCAGGTTTGAATCCAAAGG-CGGTGTGCTGGCTATGCCCAGGGGGGGTGATGGGGGGGAGGTGAGAGGCCCAGGCAGATGGTGGCTGAGATGGCCCAGCTTTGCCCCCTCTCCACCGCC Canis_familiaris GTGTGAGGGGTGGGGTGGTGCAAGACCAGTGCGGCATTC-GCAGGTGCCAGGTTAAAGGGATGCCACAGAGTATTCAGGACACTTTAATACAATGTTTTTTTAGTTCAATTAATGCCACAAATTT---ATGAACAACACATCGATATTTCAATAGGATCTAGCCCTGTACACAGC-GGCTCGCTAGCCTCAAGGT-GCTCCTGCTCTGGGGTGGATTGGGGAGACGAGTGAGGGAGATAGGGCAGTGGGCTTCAGGCTGCACCCCTGGTCTCAGCTTCCTGCGTGGCCCAGGCCTCTGCTTGTCTTCCCAGGAATCCCCACCAGAACTCCCCATCCAGGGTCTGAATCCCGAGGCCAGTGTGCTGAATGTG-------------------GAGAGGTGAGAGGTCCGGGTCAAGGGCA-CCAGAATCCCTGACCTGCTCCTGTCCTCCATCCCC Crocidura_russula ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Equus_caballus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Erinaceus_europaeus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Felis_catus GTGTGGGCGGGTCAGGGGCGCCAGGCCAGCAGGGCTTTCAGCCGGTGCCAGGTCGAGGGGGTGCCACAGAGTAATAGGGACATTTTCATACGATGGTTTTTAAATCGGATTAATGCCAAGAATTCATTATGAACGACCTATCCAGCTTTCGACGGGATCCAGCCCT----------GTCTCACTAGCCTCACGGTAGCCCCCGCCCTGGGGCGGACTGGGGAGAGGAGTGAGGGAGATGGGGCGGTGGGCTTCAGGGTGCACACCTGGTCTCAGCTTCCTGTGTGGCCCGGGCCTCCGCCCCTCTCCCCAGGGGTCGCCACCAGAACTCCCCATCCAGGGTCTGAATCCCGAGGCCAGCATGCCGAATGTG-------------------GAGAGGGGAGAGGTCTGGGTCTGGGGTAGCCGGTGCCCCTCACCCGCTCCTGCTCTCCCTCCCC Homo_sapiens GTGCGGCGGGCGGGGTGCTGCCAGATGGGGGAGGCCACAGGCGCTGCGTGCATGAAGGGGGCCTAA-AGCGCAATCGGGATATTTTCATGCAATATTTTAAAAATCGAATTAATGCTAAAACTCCACGATGGAC-AACCATCTAAATTTCGACATAATTAAACCCTGTACCTGCCTTCCTGGCTTGCCTGGTCCTAGTCTCTGCCCTGGGGTGGATCGGGGAGGAGGGAAGGCAGGTGGGGACAGTGGGCCCCTAGGGGCATGTCTGGCCAAGGCTGCTGGTGGGGCTCAGCCTCCAGGCCTCTCCACCCTCCATCCCCACCAGAACTCCCCCCACCCCGTCTGAATCATCCCCCCTGAGTGCCT--------------GGGCAACAGGAAAGAGGTGAGAAGTGAGGATCAAGGG---TCAAGACCCCTGACCTGCCCCTACCCTATGCCCCC Macaca_mulatta GTGCGGCGGGCGGGGTGCTGCCAGGCGGGGGAGGCCACAGGCGCTGCTTGCATGGAGGGGGCCCGA-AGCGCTACCAGGATATTCTCATGCAATATTTAAAAAATCGAATTAATGCCAAAACTCCACAATGGGC-AGCCATCTAAATTTCGACATCATTCAATCCTGTACCTGCCTTCCTGGCTTGCCTGGTCCTAGTCTCTGCCCTGGGGTGGATCGGGGAGAAGGGAAGGCAGATGGGGACAGTGGGCCCCCAGGGGCATGTCTGGCCCAGGCTGCTGGTGGGGCTCAGCCTCCAGGCCTCTCCTCCCTCCACACCCACCAGAACTCCGGACCCCAGGTCTGAATCATTCCTCCTGAGTGCCT--------------GGGCAACAGGAGGGAGGTGAGAAGTGAGGATCAAGGG---TCAAGACCCCCGACCTGCCCCTACCCTATGTCCCC Myotis_lucifugus GTGCGGCTGGCGG-------CAGAGCGAGGGGGGCGCGCAGCCGGGCCCAGATGAAGGCAGAGTCACAGAGTAATCAGGAGAGTCCACCAATATATTTTAAAAATTGAATTAATGCCAAAATTTCACAATGAACCAAATATCTAAATTTCAATAGAATCTACCCCTGTGCTCAGCTACCTCACCAGCTTCACACCAGTCCCTTTGCTGCAGCTAATTGGGAAGGGAGGTGGGGGAGACGAGGCAGTGGGCTTCAGGGGGTGCGCTTG----CAGCCTCCTGCCTGGCCGGGGCCTCGGCCTCTCCCCCGGGGA----------------CCTGCCCCAGGTCTGAATCCCCAGGCCAGTGTGCTG---GTGGCCAGGGGGGGAGATGGGA-GGCGGTGAGA----GAGGCGGGAGGGCGCCAGCACCCCTGACCTGC-CCTGCCCTCCGTCCCA Neomys_fodiens GTGAG---------------CGGGGGGACGGCGGACCCG---GGAGCCCAAGTGATGGGGAGCACACGATGG-------------------------------TCCAGAACGCTGCGGGGATCCG-------------------------GAC-------------------------------------------------------GGGCGCCCTGCGGGGCGGGCTGCAGGGGAGTGGGGTGGGGGCTTCACG-----------CCGCAGCGCTCCCACAGGCCCTCGGTTTT----------------------------------------------------------CCAGGGGTCCCCCGCACCCTTGGGGGAGAGTTGGGAGAGAGAC---------------AAGGGCGCTGGCGCCTCTCACT----CCTGCACCCGCCCACA Pteropus_vampyrus GTGCGGCTGGCGG-------CAGGGAGAGGAGAAGAGCCCTCAGCGCCCAGATTAAGGGGGAGCCACAAAGCAAGCAGGATATTTTAACAATATATTTTAAAAACTGAATTAATG-------------ATGAACAAAATATCTAAATTTTGACAGGATGCACCTCTGTGCATAGCTACCTCACCAGTCTCACATGGGCCCTGGCCT----GCGGGTTGCTGGGGAGAGTGAGGGGGAT-GAGCGGTGGGCTTCAGGGTGAGCCCTTGGTCTTAGCCCCCTTCGTGGCCCAGACCTCTGCCTCCCATCCCAGGGATCCCCAAAAGAATGTTCTGTCCCAGGTCTGAGTCCCAAGGCCAGTGTGCTGGACGTGTCTAGGGGGGGAGATGGGAGAGAGGTGACTGGTGAGGGTCAGGGGTAGCCGGCACC-CTGACCTGCCCCTGCCCTCTGTCCCA Sorex_coronatus ---------------------------GTGAGGGCTCAG---GGAGCCCCAGTGATGGGGACCGTTCCGCGGGGAC-------------------ATTGCAAACGTGGATCTTTGCCGGAGCCCC-------------------------GAC-------------------------------------------------------GAGCGCCCTGGAGTG----------------GGGCTGTGGGCTTCATG-----------GCTCTGGTCTCC------CCCTGGGGTCC----------------------------------------------------------CCAGCACCCTGCAGGTATCTGGGCGGAGGGTTGGGACAGAGACGAG-GGGCCTGCTCAAGGGGGGTTGGCACCCCTCACC----CGCCCGCCTCTCCCCC Tursiops_truncatus GTGCGGCCGGCGGGGCGGGGGGAGGCGAGCGCGACCCCA-GCCGGGCGCAGATGGAGGGGGCGACACAGAGTAATCAGGGCATTTTATACACATATTTTTCAAATCCAATTAATGCCAAAACTTC-TTGCGGACAGAATATCTAAATTTCAATAAGATCCAACCCTGTGCATGGCTACCTCACTAGCCTCACACTAGTCCCTGCCGGGGGGCGAGTTGGGGAGGGGGGAGAGGGAGATGTGGCAGT----------GTGTGGACTTGGTCTCAGCCTCCTGCGTGGCCCAGTCTCT-GCCCCTCTCCCCAGGGCTCCCCACCAGAACTCCTCCTCCCAGACCTGAATCCCAAAGGCAGTGTGCCGGATATGTCCTAGGGGGGAGATGGGAGGGAGGTGAGAGGTCCAGGTCAAAGGTTGCCGGCACCCCTGACCTGC-CCCCACCTCTGCCTCA ; END;