#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 14:03 GMT TreeBASE (cc) 1994-2008 Study reference: Pedersen N., Holyoak D., & Newton A. 2006. Systematics and morphological evolution within the moss family Bryaceae: a comparison between parsimony and Bayesian methods for reconstruction of ancestral character states. Molecular Phylogenetics and Evolution, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1688] BEGIN TAXA; TITLE inference_with_DNA_sequence_data_only; DIMENSIONS NTAX=35; TAXLABELS Acidodontium_heteroneuron Acidodontium_ramicola Acidodontium_seminerve Anomobryum_humillimum Anomobryum_julaceum Anomobryum_prostratum Brachymenium_capitulatum Brachymenium_nepalense Bryum_argenteum Bryum_barnesii Bryum_bicolor Bryum_bornholmense Bryum_caespiticium Bryum_coronatum Bryum_dunense Bryum_dyffrynense Bryum_gemmiferum Bryum_gemmilucens Bryum_gemmiparum Bryum_radiculosum Bryum_rubens Bryum_ruderale Bryum_sauteri Bryum_subapiculatum Bryum_tenuisetum Bryum_versicolor Bryum_violaceum Haplodontium_megalocarpum Haplodontium_reticulatum Imbribryum_alpinum Plagiobryum_capillare Plagiobryum_cyclophyllum Plagiobryum_pseudotriquetrum Plagiobryum_zieri Rhodobryum_roseum ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M885] TITLE 'Morph_data'; LINK TAXA = inference_with_DNA_sequence_data_only; DIMENSIONS NCHAR=42; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3" MISSING=? GAP= -; CHARSTATELABELS 1 'leaf stance (when moist)' / 'erecto-patent' erect spreading, 2 foliation_loose_or_imbricate / imbricate medium loose, 3 widest_point_of_leaf / 'at or above mid-leaf' 'below mid-leaf', 4 concavity_of_leaf / flat_to_weakly_concave concave, 5 shape_of_leaf_apex / acute_or_acuminate obtuse rounded, 6 relative_length_of_costa / excurrent percurrent evanescent 'long-excurrent >200 microns', 7 Stem_leaf_costa_guide_cells / present absent, 8 leaf_border_of_narrow_cells / well_developed weak nil, 9 leaf_margin_recurved_or_not / recurved weakly_recurved plane, 10 'toothing-denticulation towards leaf apex' / weak strong none, 11 decurrency_of_leaf_base / not_decurrent 'weak-narrow decurrent' strongly_decurrent, 12 red_colour_at_leaf_base / no yes, 13 'mid-leaf cell walls (laxness of areolation)' / 'normal-strong' 'thin (lax areolation)', 14 change_in_leaves_on_drying / spiral_twist 'shrunken-twisted' little_change, 15 filamentous_axillary_bulbils / absent present, 16 other_axillary_bulbils / absent present, 17 other_axillary_bulbils_length / less_than_250 '480-600' more_than_750, 18 'leaf primordia on "other" axillary bulbils' / 'present (no costa)' costate, 19 rhizoid_colour / brown purple_to_violet, 20 rhizoidal_tubers / absent present, 21 Rhizoidal_tubers_size / '150-270' less_than_100 more_than_330, 22 'rhizoid papillosity (largest rhizoids)' / papillose coarsely_papillose smooth, 23 rhizoidal_tuber_position / long_rhizoids short_rhizoids leaf_axils, 24 rhizoidal_tuber_colour / red orange yellow brown, 25 surface_cells_of_rhizoidal_tubers / not_protuberant protuberant, 26 sexuality / autoicous dioicous synoicous, 27 capsule_stance / erect inclined cernuous_to_pendulous, 28 'capsule shape (outline)' / ellipsoid_to_broadly_ovoid cylindrical pyriform shortly_pyriform, 29 capsule_neck / medium short long, 30 capsule_mouth / normal contracted, 31 exothecial_cell_walls / normal 'thin-weak' strong_and_persistent, 32 Exostome_development / strongly_reduced slightly_reduced 'well-developed', 33 Exostome_pattern_of_lower_outside / papillose reticulate 'cross-striolate', 34 Color_of_lower_exostome / 'red to reddish-brown' 'yellow to yellow-brown', 35 Upper_exostome_surface / papillose smooth, 36 endostome_cilia / nil rudimentary 'well-developed', 37 Endostome_processes_perforation / entired_or_perforated_along_the_keel forked, 38 Spore_size / more_than_25 up_to_20, 39 habitat_1$_hygrophyte / dry_habitats mesophyte hygrophyte, 40 habitat_2$_substrata / corticolous 'rock-thin soil' _soil, 41 'habitat 3$ calciphile-acidophile' / neutrophile calciphile acidophile, 42 habitat_4$_nutrient_tolerance / low medium high, ; MATRIX [ 10 20 30 40 50 ] [ . . . . . ] Acidodontium_heteroneuron 22000{023}0212100100??00?0???1{01}220011000100000 Acidodontium_ramicola 1110020210100100??00?0???1{01}020011001100000 Acidodontium_seminerve 11100202{12}{02}200100??00?0???1{01}020011000100000 Anomobryum_humillimum 1001{12}21222100210??10?0???1{12}000021112011120 Anomobryum_julaceum 1001{12}{12}12221102012?{01}0?0???1{12}000021102011120 Anomobryum_prostratum 1001{12}11222{01}00200??10?0???1{12}000021112011120 Brachymenium_capitulatum 0000030002000000??00?0???00200000000?10000 Brachymenium_nepalense 0000100000000000??00?0???00000000000?00000 Bryum_argenteum 00010{013}12220112010000?0???12{02}1012110201{01}101 Bryum_barnesii ?????????????????????????????????????????? Bryum_bicolor 01110{01}02200002011001000301201012110201110{01} Bryum_bornholmense 01000{01}0010010200??012000022{02}100211020111{02}{01} Bryum_caespiticium 01100{03}01{01}001020110010000012{02}1002110201{01}10{01} Bryum_coronatum {02}210030110000100??00?0???1201002111201{01}112 Bryum_dunense 01100{03}02100002011101000301201012110201{01}10{01} Bryum_dyffrynense 0{01}111201201102012000?{01}???12{02}1012110201211{01} Bryum_gemmiferum 01100{01}021200020100012003012010121112011101 Bryum_gemmilucens ?????????????????????????????????????????? Bryum_gemmiparum 0{01}010102120002012{01}01001{01}012{02}01021102012111 Bryum_radiculosum 01100{03}0110000200??01011{03}01201102110201011{01} Bryum_rubens 0100000010000100??0100{12}0112110021102011101 Bryum_ruderale 01100{03}0110000100??110100012{02}10021112011101 Bryum_sauteri 0110000220000100??0110130{02}2211021102011100 Bryum_subapiculatum 01100{03}0110000200??01000001201002110201{01}1{02}0 Bryum_tenuisetum 01100{01}0110000200??01001211201002110201{01}120 Bryum_versicolor 01100{03}02{01}00002011101000301201012110201{01}10{01} Bryum_violaceum 0110000110000100??111200012010021102011101 Haplodontium_megalocarpum 01110{03}021{01}010100??00?0???11111000001?02{01}0{12} Haplodontium_reticulatum 1111010212000100??00?0???11111000001?0210{12} Imbribryum_alpinum 0110010210010200??0100100120000211020111{02}0 Plagiobryum_capillare 2101030010010000??01000{03}012{02}0002110201{01}{01}01 Plagiobryum_cyclophyllum 2201{12}20122000110??00?0???12311021102012101 Plagiobryum_pseudotriquetrum 01100{01}0010{12}10110??00?0???1200002110201210{01} Plagiobryum_zieri 1001011122001200??00?0???11021212011001110 Rhodobryum_roseum 2000020201000100??00?1???1201002100200{01}111 ; END;