#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 0:32 GMT

TreeBASE (cc) 1994-2008

Study reference:
Tripathi A.K., Singh K., Pareek A., & Singla-pareek S.L. 2015. Histone chaperones
in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and
transcriptional regulation. BMC Plant Biology, 15(42).

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S16883]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=9;
        TAXLABELS
            Arabidopsis_thaliana_SSRPL
            Chlamydomonas_reinhardtii_Cre01.g029450.t1.1
            Homo_sapiens_SSRP
            Oryza_sativa_SSRPL1a
            Oryza_sativa_SSRPL1b
            Oryza_sativa_SSRPL2
            Physcomitrella_patens_Phpat.009G018700.1.p
            Saccharomyces_cerevisiae_SSRP
            Selaginella_moellendorffii_Sm_166865
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M25506]

	TITLE Histone_chaperone_SSRP_matrix;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=819;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810         ]
[                                                         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         ]
Arabidopsis_thaliana_SSRPL                       MADG--HSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGG--------KAVEVDRSDIVSVSWTKVTKSNQLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTP--DEKQLSVSGRNWGEVDLHGNTLTFLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIP----------------NSNTQFVGD-------------ENRPPSQVFNDTIVAMADVSPG-VEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSISDELMNTKFKD---KLERSYKGLIHEVFTTVLRWLSGAKITKPG-KFRSSQ-DGFAVKSSLKAEDGVLYPLEKGFFFLPKPPTLILHDEIDYVEFERHAAGG-ANM--HYFDLLIRLKTDH-EHLFRNIQRNEYHNLYTFISSKGLKIMNLG-GAGTADGVAAVLGDNDDDDAVDPHLTRIRNQ-------AAD-ESDEEDEDFVMGEDDDGGSPTDDS-GGDDSD---------------ASEGGVG--------EIKEKSIKKEPKKEASSSKGLPPK-------RKTVAADE-GSSKRKKPKKK-KDPNAPKRAMSGFMFFSQMERDNIKKE--HPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQPMN----------------------------------------------VDSGNDSDSN--------------------------------
Chlamydomonas_reinhardtii_Cre01.g029450.t1.1     MAEG-VQAFGEIWLGGRGGVASGVLKLAPTGLTWRRKQGS--------KLVEVKKDEIEALSWTKVPRGCQLSVRRKGGPTVNFLGFRDKDLDTLQQYSRTTLALPEGVSEGALSTSGHNWGGVQLRGASLAFLVGGKVAFELPLPDVCTAQQT-KDDVMLELHVDDTGGEVAEDMLTELAFYVP----------------PGNEDFPAQG------------EEVPPAKVMLDALLPHADTEAAAADEPVCVFSEVGIVAPRGRFEVEMHLGYLQLGGQSQDFKVRYASIQRIFILPKHNTPHTLVVISLDPPIRKGQTYYAHLLCQFPTDDDISVELDITEEALAAKNEKNGGKLSADMTGPVWEVFAKLLRGLSGARITRPG-HFKNAAGDGVSVRCSYKADDGQLYPLDRGFFYVHKPPLLIPDNDIESVEFARQGSGA-VSSTVRTFDLVVRLKGGA-EHQFRNIQRSEWGNLFEFIRAKKIPIENFGSAQHGPGGAKPGMEDD----DMDPGIRRAAAE--------ADDDEDDEDEDFEASGGTDSSEDIDEEDDAEMIDEEGVAVDAIKKKRKKGDADGGEEGEAAAAPPPKKKPAKEKPATSPSGADAAPGSGGKGKKGKKAAATEEGEGGAKPKKERKKKDPNAPKKNLSAFMYFSNSNRDKVKAE--NPGIAFGEVGKLLGERWKAMSAEEKAPYDEMAAKDKVRYADAMKAYKASGAAGGGE------------------------------------------AAAAADDGDDDAGDAADDE------------------------
Homo_sapiens_SSRP                                MAET--LEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTG--------KVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLEL--MEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTG-KNEVTLEFHQNDD----AEVSLMEVRFYVP----------------PTQE------------------DGVDPVEAFAQNVLSKADVIQA-TGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEG---RLTKNMSGSLYEMVSRVMKALVNRKITVPG-NFQGHS-GAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARG------TTTTRSFDFEIETKQGT-QYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSD--EDQHDAYLERMKEEGK-----IREENANDSSDDSGEETDESFNPGEEEEDVAEEFDS--------------------------------NASASSSSNEGDSDRDEKKRK-----QLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSD--HPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEEEELASTPPSSEDSASGSDE
Oryza_sativa_SSRPL1a                             MTDG--HLFNNILLGGRAGSNPGQFKVYSGGLAWKRQGGG--------KTIEIEKSDLTSVTWMKVPRAYQLGVRTKDGLFYKFIGFREQDVSSLTNFMQKNMGLSP--DEKQLSVSGQNWGGIDINGNMLTFMVGSKQAFEVSLADVSQTQMQGKTDVLLEFHVDDTTGGNEKDSLMDLSFHVP----------------TSNTQFLGD-------------ENRTAAQVLWETIMGVADVDS--SEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSIVRLFLLPKSNNPHTFVVVTLDPPIRKGQTLYPHIVIQFETEAVVERNLALTKEVLAEKYKD---RLEESYKGLIHEVFTKVLRGLSGAKVTRPG-SFRSCQ-DGYAVKSSLKAEDGLLYPLEKGFFFLPKPPTLILHEEIEFVEFERHGAGG-ASISSHYFDLLVKLKNDQ-EHLFRNIQRSEYHNLFNFINGKHLKIMNLGDGQGATGGVTAVLRDT-DDDAVDPHLERIKNQ-------AGDEESDEEDEDFVADKDDSG-SPTDDS-GGEDSD---------------ASESGG------------EK--EKLSKKEASSSKPPVK--------RKPKGRDE-EGSDKRKPKKK-KDPNAPKRAMTPFMYFSMAERGNMKNN--NPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQSQVDKKRYEKESAVYRGAAAMD----------------------------------------------VDSGSGGNESD-------------------------------
Oryza_sativa_SSRPL1b                             ----------------------------------------------------------------------------------------------------------------MFLVT------LSIVGNMLTFMVGSKQAFEVSLADVSQTQMQGKTDVLLEFHVDDTTGGNEKDSLMDLSFHVP----------------TSNTQFLGD-------------ENRTAAQVLWETIMGVADVDS--SEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSIVRLFLLPKSNNPHTFVVVTLDPPIRKGQTLYPHIVIQFETEAVVERNLALTKEVLAEKYKD---RLEESYKGLIHEVFTKVLRGLSGAKVTRPG-SFRSCQ-DGYAVKSSLKAEDGLLYPLEKGFFFLPKPPTLILHEEIEFVEFERHGAGG-ASISSHYFDLLVKLKNDQ-EHLFRNIQRSEYHNLFNFINGKHLKIMNLGDGQGATGGVTAVLRDT-DDDAVDPHLERIKNQ-------AGDEESDEEDEDFVADKDDSG-SPTDDS-GGEDSD---------------ASESGG------------EK--EKLSKKEASSSKPPVK--------RKPKGRDE-EGSDKRKPKKK-KDPNAPKRAMTPFMYFSMAERGNMKNN--NPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQSQVDKKRYEKESAVYRGAAAMD----------------------------------------------VDSGSGGNESD-------------------------------
Oryza_sativa_SSRPL2                              MTDG--HHFNNISLGGRGGNNPGQFKLYSGGLAWKRQGGG--------KTIEVEKSDITSVTWMAIPRSYQLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITP--EEKQLSVGGHNWGGIEINGNMLSFNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVP----------------TSNTQFPGD-------------ENRPSAQVLWQAILNKADVGS--SEEAVVTFDGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSILRLFVLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVQRDLTLSDEVLAEKYKD---RLENSYQGLIHEVFSKVLRGLSGAKVTRPS-TFRSCQ-DGYAVKSSLKAEDGLLYPLEKGFFFLPKPPTLILHEEIEYVEFERHGAGG-ASISSHYFDLLVKLKNDQ-EHLFRNIQRNEYHNLFNFISGKHLKILNLGEAQGRAGGVTAVLQST-DDDAVDPHLERIRNQ-------TGDDESDEEDEDFVADKDDSG-SPTDDS-GEEGSD---------------ASLSGG------------EK--EKSSKKEASSSKAPLKK-------RKPKGGDAAEGSEKRKPKKK-KDPNAPKRAIAPFMYFSKAERANLKNS--NPELATTEIAKKLGERWQKMTAEEKQPYVEQSQVDKKRYAEESAAYRGAAAMD----------------------------------------------VDSGPASD----------------------------------
Physcomitrella_patens_Phpat.009G018700.1.p       MGDTAVHQFNSILLGGRGGTNPGQLKINSGGFQWRKAGGG--------KVVEVSTSDIASLSWTRVPKGFQLGVKLKAGRDVKFNGFRESDMANLGSFFTTNMGITS--EEKPLAISGRNWGDVTLEGSSLAFSVGGKHAFDVSIADVSQTQMQGKNEVMLEFHVDDTTGASEKDTLMELSFHIP----------------TTNTTYIGD-------------EERPPAQIFREKILSMGDVGPS-GAEAIALFEEVHILTPRGRYNVELHASFLRLQGQANDFKIQYSSVVRLFILPKSNQPHTFVVITLDPPIRKGQTFYPHIVLQFPSEEIAECTLSIGEELLNTKYKD---RLQPAYKDLSHDVFTQILKGLSGAKVTRPG-KFRSAQ-DGYCVRTSLKAEEGTLYPLEKSFFFLPKPPTLILHDEIEYLEFERHGAAGTSSISSHYFDLLIRLKSEQ-EHQFRNIQRNEYHNLFNFISGKNLKIMNLGDAQGTS-GVAAALEGS-DDEGVDPHLNRIRSARESGGAGLGDEDSDEEDEDFVAEKDDAG-SPTDES-DGEEPD---------------GSDDGGGGSDEEEEDEEEERPKKKREKREDVAPKSAPKK-------RKKKDEADGEDGGKKKRKKKEKDPNAPKRALSAFMRFQLEERKKMKADPGQASMSFGEFGKSLGEKWRNMSASDKAPYEADAKVDQERYKKAMAGYKSGQSGP----------------------------------------------SEAYDDGEDEGSDDE---------------------------
Saccharomyces_cerevisiae_SSRP                    ----MSTDFDRIYLN--QSKFSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYDLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVE--QREHSLRGWNWGKTDLARNEMVFALNGKPTFEIPYARINNTNLTSKNEVGIEFNIQDEEYQPAGDELVEMRFYIPGVIQTNVDENMTKKEESSNEVVPKKEDGAEGEDVQMAVEEKSMAEAFYEELKEKADIGEV-AGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHLLVLAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKD---KLKKQYDAKTHIVLSHVLKGLTDRRVIVPG-EYKSKY-DQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTS---TSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNLRVKNEDREVQERLQTALGSDSD----EEDINMGSAGED------------DESVDEDFQVSSDNDADEVAEEFDSDAALS----------------------------------------------------------------------DAEGGSDEERPSKKPKVE--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Selaginella_moellendorffii_Sm_166865             MGD--AHQFNNILLGGRGGANPGQLKISSKGFSWRKSGGG--------KVVDVAKDDVKSVSWTRVSRSYQMSIRLKAGSNVKFTGFREQDVSSLNTFITSNIGVTP--QDKPLAVSGRNWGEAELEGNTLSFVVGGKPAFEICVADISNTQVQGKNDVQMEFHVDDT--ANEKDTLMEMSFHVP----------------STNTTFVGD-------------EERASAQVFCDKILSMADVGPA-GGEAVAAFETVNVLTPRGRYLVELHLSFLRLFG-ASDFKIQYTSVARLFVLPRSAQSSTYVVITLDPPIRKGQTFYPHIVFQYPSEEITELTPLISDELLNTKYKD---RLAPQYKGLSYEVFVEILRGLSGAGITKPGTKFRSSQ-EGYAVRAALKAEEGLLYPLEKSFFFLPKPPTLIVYEEIDYVEFERHGAAGTSSMSSKNFDLILRLKTDQ-EHLFRNISRNEYHSLFKFISEKGLKILNF-QTQGSS-AVAEALQGS-DDEGVDPHLERIRIARATGDEG----DSDEEDEDFVADKDDEG-SPTDDSGEEEEPD---------------ASDSGG--------EQQDERPVKKDKKKVEASQKPAATK-------KKKKDE---EGDGDKKKKRRKKDPNAPKRALSGFMYFSLAERENLKKS--TPGISFKDVAKTLGERWKAMSKDEKEPFESQARVDKERYTKQMQGYNKGNAGG----------------------------------------------STADDESSD---------------------------------
;
END;