#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 20:10 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sanchez-puerta M., Bachvaroff T., & Delwiche C. 2007. Sorting wheat from chaff in
multi-gene analyses of chlorophyll-c containing plastids. Molecular Phylogenetics
and Evolution, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1755]

BEGIN TAXA;
        TITLE  TaxonLabelSet12908;
        DIMENSIONS NTAX=19;
        TAXLABELS
            Astasia_sp.
            Chlorella_sp.
            Cyanidioschyzon_sp.
            Cyanidium_sp.
            Cyanophora_sp.
            Emiliania_sp.
            Euglena_sp.
            Gracilaria_sp.
            Guillardia_sp.
            Marchantia_sp.
            Mesostigma_sp.
            Nephroselmis_sp.
            Nicotiana_sp.
            Odontella_sp.
            Oryza_sp.
            Pinus_sp.
            Porphyra_sp.
            Synechocycystis_sp.
            Zea_sp.
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1784]

	TITLE 'presence-absence of 261 genes';
	LINK TAXA = TaxonLabelSet12908;
	DIMENSIONS NCHAR=261;
	FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -;

MATRIX
[                               10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 ]
[                                .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         . ]
Astasia_sp.             111111111111111111111111111111111111111111111111111111111111111111111111111111111110110111111111111111111111111111111110111111101101110100110100111110111010001000110001001011110111111111111111111101111111111111111111111111111111111111111111110111111111111111111
Chlorella_sp.           110111111100100100111100000010111111001111111111111110110111001111111111111111111100010101110001110011000000000000000110111111101101110100100110111110111000001000110001001011100111111111101111001011111111111111111111111111111111111111111111111111111111001111111
Cyanidioschyzon_sp.     000000000000000000110000101101000111101001111011001101001001111101011111111111100100000000100000000000000000000000100001001011000000100000000000000000000000000000000000000010000000110000001011001011000010000010111100011011110110000111001011011111111111110100000
Cyanidium_sp.           000000000000000000110000101001000111110001110010001101001001111111011111111111100100000010100000000000000000000000100011001011000000100000000000000000000000001000000000000010000000110000001011000011000011000101111010010001110110000110000011011111111111110100000
Cyanophora_sp.          111000000100000001101101000010001110111101111101100001111111110010111111111111111100000000100001000011000000000000000000100111000100100100000001110111000000001000000000000010000010111101101011000011001101000000000000111111100001111111111111111111111111111111111
Emiliania_sp.           111111111100000000111001101101111111111101111111101111111111011111111111111111111100010100110000000010000000000000100011001011100100111100100001011010001000001000000000000010000100110111101111001011110011100111101110010000011111110111101111011111111111110111111
Euglena_sp.             111111111100100100111111101111111111111111111111111111111111111111111111111111111110110111110001110011000000000000100110111101101101110100110100111110111010001000110001001011100111111111101111101001111111111111111111111111111111111111111111110111111111111111111
Gracilaria_sp.          000000000000000000010000101101000001111000010011001111001011111101011111111111000000000010000000000000000000000000100001001011000000000000000000000000000000000000000000000010000000000001000111001011000000001000000000011100011110000010000001011111111111110111111
Guillardia_sp.          111011111100000000111000101101111101111001110011101111001011001111111111111111111000000100110000000000000000000000100001001010000000100000000000001000000000001000000000000010000000111111001011000011000011100000100010110010011111111111110111011111111111110111111
Marchantia_sp.          110111111100100100111100010010111111001111111111111111110110111111100000000000111100010101110001110011000000000000000110111111101111111100110000111110011000001000110001001001100111111111111100000011111111111111111111111111111111111111111111101111111111111111111
Mesostigma_sp.          111111111100100100111100000010111111001111111101111111110111001111100000000000110100010101110001110011000000000000000110111111101101111100100100111110011000001000110001001000100111111111101100000011111011111111111111111111111111111111110011001111111111111011111
Nephroselmis_sp.        110111111100100100111100000010111111001111111101111111110111011111100000000010111100010101110001110011100000000000000110111111101101110100100110111110111000001000110001001011100111111111101100000011111111111111111111111111111111111111110011111111111111111011111
Nicotiana_sp.           110111111100100100111100111110111111111111111111111111110110111111100000000000111100010101110001110011100000000000000110111111101111111100110100111110011000001000110001001000100111111111111100000110111111111111111111111111111111111111111111111101111111111111111
Odontella_sp.           111011111100000000011001101101111111111001111011101111111111111111111111111111111100000100110000000010000000000000100001001011000000100000000000001000000000001000000000000010000000110111101011000011011111101100101110000000011111111111111111101111111111111111111
Oryza_sp.               111111111100100100111100111110111111111111111111111111110110111111100000000000111100010101110001110011100000000000000110111111101111111100110100111110011000001000110001001000100111111111111111000111111111111111111111111111111111111111111111111000000000111111111
Pinus_sp.               110111111100100100111100010010111111111111111111111111110110111111111111111111111100010101110001110011000000000000000110111111101111111100110100111110011000001000110001001001100111111111111100000011111111111111111111111111111111111111111111111011111111111111111
Porphyra_sp.            000000000000000000010000000001000001110000000010001111001001111101011111111111000000000000000000000000000000000000100001001010000000000000000000000000000000000000000000000010000000000000000011000011000000000000000000000000011110000000000000011111111111110111111
Synechocycystis_sp.     000000000000000000000100000000000000000000000000000001000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000011000000000000000000000000000000000000000000001111111111111000000
Zea_sp.                 111111111100100100111100111110111111111111111111111111110110111111100000000000111100010101110001110011100000000000000110111111101111111100110100111110011000001000110001001000100111111111111111000110111111111111111111111111111111111111111111111000000000111111111
;
END;