#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 20:10 GMT TreeBASE (cc) 1994-2008 Study reference: Sanchez-puerta M., Bachvaroff T., & Delwiche C. 2007. Sorting wheat from chaff in multi-gene analyses of chlorophyll-c containing plastids. Molecular Phylogenetics and Evolution, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1755] BEGIN TAXA; TITLE TaxonLabelSet12908; DIMENSIONS NTAX=19; TAXLABELS Astasia_sp. Chlorella_sp. Cyanidioschyzon_sp. Cyanidium_sp. Cyanophora_sp. Emiliania_sp. Euglena_sp. Gracilaria_sp. Guillardia_sp. Marchantia_sp. Mesostigma_sp. Nephroselmis_sp. Nicotiana_sp. Odontella_sp. Oryza_sp. Pinus_sp. Porphyra_sp. Synechocycystis_sp. Zea_sp. ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1784] TITLE 'presence-absence of 261 genes'; LINK TAXA = TaxonLabelSet12908; DIMENSIONS NCHAR=261; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . ] Astasia_sp. 111111111111111111111111111111111111111111111111111111111111111111111111111111111110110111111111111111111111111111111110111111101101110100110100111110111010001000110001001011110111111111111111111101111111111111111111111111111111111111111111110111111111111111111 Chlorella_sp. 110111111100100100111100000010111111001111111111111110110111001111111111111111111100010101110001110011000000000000000110111111101101110100100110111110111000001000110001001011100111111111101111001011111111111111111111111111111111111111111111111111111111001111111 Cyanidioschyzon_sp. 000000000000000000110000101101000111101001111011001101001001111101011111111111100100000000100000000000000000000000100001001011000000100000000000000000000000000000000000000010000000110000001011001011000010000010111100011011110110000111001011011111111111110100000 Cyanidium_sp. 000000000000000000110000101001000111110001110010001101001001111111011111111111100100000010100000000000000000000000100011001011000000100000000000000000000000001000000000000010000000110000001011000011000011000101111010010001110110000110000011011111111111110100000 Cyanophora_sp. 111000000100000001101101000010001110111101111101100001111111110010111111111111111100000000100001000011000000000000000000100111000100100100000001110111000000001000000000000010000010111101101011000011001101000000000000111111100001111111111111111111111111111111111 Emiliania_sp. 111111111100000000111001101101111111111101111111101111111111011111111111111111111100010100110000000010000000000000100011001011100100111100100001011010001000001000000000000010000100110111101111001011110011100111101110010000011111110111101111011111111111110111111 Euglena_sp. 111111111100100100111111101111111111111111111111111111111111111111111111111111111110110111110001110011000000000000100110111101101101110100110100111110111010001000110001001011100111111111101111101001111111111111111111111111111111111111111111110111111111111111111 Gracilaria_sp. 000000000000000000010000101101000001111000010011001111001011111101011111111111000000000010000000000000000000000000100001001011000000000000000000000000000000000000000000000010000000000001000111001011000000001000000000011100011110000010000001011111111111110111111 Guillardia_sp. 111011111100000000111000101101111101111001110011101111001011001111111111111111111000000100110000000000000000000000100001001010000000100000000000001000000000001000000000000010000000111111001011000011000011100000100010110010011111111111110111011111111111110111111 Marchantia_sp. 110111111100100100111100010010111111001111111111111111110110111111100000000000111100010101110001110011000000000000000110111111101111111100110000111110011000001000110001001001100111111111111100000011111111111111111111111111111111111111111111101111111111111111111 Mesostigma_sp. 111111111100100100111100000010111111001111111101111111110111001111100000000000110100010101110001110011000000000000000110111111101101111100100100111110011000001000110001001000100111111111101100000011111011111111111111111111111111111111110011001111111111111011111 Nephroselmis_sp. 110111111100100100111100000010111111001111111101111111110111011111100000000010111100010101110001110011100000000000000110111111101101110100100110111110111000001000110001001011100111111111101100000011111111111111111111111111111111111111110011111111111111111011111 Nicotiana_sp. 110111111100100100111100111110111111111111111111111111110110111111100000000000111100010101110001110011100000000000000110111111101111111100110100111110011000001000110001001000100111111111111100000110111111111111111111111111111111111111111111111101111111111111111 Odontella_sp. 111011111100000000011001101101111111111001111011101111111111111111111111111111111100000100110000000010000000000000100001001011000000100000000000001000000000001000000000000010000000110111101011000011011111101100101110000000011111111111111111101111111111111111111 Oryza_sp. 111111111100100100111100111110111111111111111111111111110110111111100000000000111100010101110001110011100000000000000110111111101111111100110100111110011000001000110001001000100111111111111111000111111111111111111111111111111111111111111111111000000000111111111 Pinus_sp. 110111111100100100111100010010111111111111111111111111110110111111111111111111111100010101110001110011000000000000000110111111101111111100110100111110011000001000110001001001100111111111111100000011111111111111111111111111111111111111111111111011111111111111111 Porphyra_sp. 000000000000000000010000000001000001110000000010001111001001111101011111111111000000000000000000000000000000000000100001001010000000000000000000000000000000000000000000000010000000000000000011000011000000000000000000000000011110000000000000011111111111110111111 Synechocycystis_sp. 000000000000000000000100000000000000000000000000000001000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000011000000000000000000000000000000000000000000001111111111111000000 Zea_sp. 111111111100100100111100111110111111111111111111111111110110111111100000000000111100010101110001110011100000000000000110111111101111111100110100111110011000001000110001001000100111111111111111000110111111111111111111111111111111111111111111111000000000111111111 ; END;