#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 20:12 GMT

TreeBASE (cc) 1994-2008

Study reference:
Ito Y., Tanaka N., Muasya A., & Garc�a-murillo P. 2016. A new delimitation of the
Afro-Eurasian plant genus Althenia to include its Australasian relative, Lepilaena
(Potamogetonaceae) – evidence from DNA and morphological data. Molecular Phylogenetics
and Evolution, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S17935]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=11;
        TAXLABELS
            Althenia_filiformis_YI1977
            Althenia_orientalis_YI1562
            Lepilaena_australis_YI1917
            Lepilaena_bilocularis_YI1918
            Lepilaena_cylindrocarpa_YI1106
            Lepilaena_preissii_YI1082
            Potamogeton_distinctus_YI1686
            Pseudalthenia_aschersoniana_YI1981
            Zannichellia_obtusifolia_YI1542
            Zannichellia_palustris_YI1473
            Zannichellia_peltata_YI1470
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32310]

	TITLE 'Althenia phyc_RAxML';
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=663;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=- GAP= -;

MATRIX
[                                              10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       ]
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Althenia_filiformis_YI1977             TGTGTGAATAACACGAGTTCTGATCAACAAGCGAAGGGTAGGAAGCTCTGGGGTTTGGTAGTTTGCCATAATGCAACTCCAAGATTCATCCCGTTTCCTCTTAGGTATGCTTGTGAATTTCTGCTTCAAGTTTTTGCTATACAACTTAACAAGGAGGTGGAATTGGCTAGTCAAACAAGGGAGAAAAATATAATAAAAACACAAGCTTTTCTTTGCGACATGCTTCTCAGAGACTCGCCTGTAGGGATATTTACTCAAACTCCTAATGTTATGGATCTAGTGAAGTGTGATGGTGCTGCCCTATATTATAGAAACCAATTTTGGTTACTTGGTATAACACCTACTAAGATTCAGATAAAAGAGATGACCAGGTGGCTTCTGGAATATCATAATGGCACTACCGGAATAAGTACAGATAGCATTTCAGAGGCAGGTTGTCCAGGTGCACAGGTGCTGGGAGATGCTGTTTGTGGTATGGCTGCTGTCAAAATCACTGATAAGGACTTTATTTACTGGTTTCGATCACACACAGCAAAAGAGATTAAATGGGGAGGAGCTAAAAATGATCCAACTGATATGGACACTGATAACACACAGATGCACCCACGTTCTTCATTCAACGCTTTCCTAGAAGTCATCAAGCAAAGGAGTCTTCCATGGGAA
Althenia_orientalis_YI1562             TGTGTGAATAACACGAGTTCTGATCAACAAGCGAAGGGTAGGAAGCTCTGGGGTTTGGTAGTTTGCCATAATGCAACTCCAAGATTCATCCCCTTTCCTCTTAGGTATGCTTGTGAATTTCTGCTTCAAGTTTTTGCTATACCACTTAACAAGGAGGTGGAATTGGCTAGTCAAACAAGGGAGAAAAATATAATAAAAACACAAGATTTTCTTTGCGACATGCTTATCAGAGACTCGCCTGTAGGGATATTTACTCAAACTCCTAATGTTATGGATTTAGTGAAGTGTGATGGTGCTGCCCTATATTATAGAAACCAATTTTGGTTACTTGGTATAACACCTAATAAGATTCAGATAAAAGAGATGACCAGGTGGCTTCTGGAATATCATAATGGCACTACCGGAATAAGTACAGATAGCATTTCAGAGGCAGGTTGTCCAGGTGCACAGGTGCTGGGAGATGCTGTTTGTGGTATGGCTGCTGTCAAAATCACTGATAAGGACTTTATTTACTGGTTTCGATCACACACAGCAAAAGAGATTAAATGGGGAGGAGCTAAAAATGATCCAACTGATATGGACACTGATAACACACAGATGCACCCACGTTCTTCATTCAACGCTTTCCTAGAA------------------------------
Lepilaena_australis_YI1917             TGTGTGAATAACTTGAGTTCTGAGCAACAGGCAAAGGGTAGGAAGCTCTGGGGTTTGGTAGTTTGCCATCATGCAACTCCGAGATTTATTCCATTTCCTCTTAGGTATGCTTGTGAATTTCTGCTTCAAGTTTTTGGTATACAACTGAACAAGGAGGTGGAACTTGCTGCTCAAACAAGGGAGAAAAATATAATAAAAACACAAGCTTTTCTTTGCGATGTGCTTCTTAGAGATTCACCTGTGGGGATATTTACTCAAACTCCTAACGTTATGGATCTAGTGAAGTGTGATGGTGCTGCCTTATATTATAGAAACCAGTTTTGGTTACTTGGGATAACACCTACTAAGATGCAGATAAAAGAGATGGCCAGATGGCTTCTGGAATGTCATAATGGCACAACCGGTTTAAGTACAGATAGCATTTCAGAGGCAGGTTGTCCAGGTGCACAAGTGCTGGGAGATGCTGTCTGTGGTATGGCTGCTGTCAAAATCACTGACAAGGACTTTATTTTCTGGTTTCGATCCCACACAGCAAAAGAAATCAAATGGGGAGGAGCTAAAAATGATCCAACTGATATGAACATTGATAGCACACAGATGCATCCACGTTCTTCATTCAATGCTTTCCTAGAAGTTGTCAAGCAAAGGAGCCTTCCATGGGAG
Lepilaena_bilocularis_YI1918           TGTGTGAATAACGCGAGTTCTGAACAACAAACAAAGGGTAGGAAGCTCTGGGGTTTGGTAGTTTGCCATCATGCAACTCCGAGATTTATCCCATTTCCTCTTAGGTATGCTTGTGAATTTCTGCTTCAAGTTTTTGGTATACAACTGAACAAGGAGGTGGAGTTGGCTGCTCAAACAAGGGAGAAAAATATAATAAAAACACAAGCTTTTCTTTGCGACGTGCTTCTCAGAGACTCACCTGTAGGGATATTTACTCAAACTCCTAATGTTATGGATCTAGTGAAGTGTGATGGTGCTGCCCTATATTATAGAAACCAATTTTGGTTACTTGGGATAACACCTACTAAGATGCAGATAAAAGAGATGGCCAGATGGCTTCTGGAATGTCATAATGGCACTACTGGATTAAGTACAGATAGCATTTCAGAGGCAGGTTGTCCAGGTGCACAAGTGCTGGGAGATGCTGTCTGTGGTATGGCTGCTGTCAAAATAACTGACAAGGACTTTATTTTCTGGTTTCGATCCCACACAGCAAAGGAGGTTAAATGGGGAGGAGCTAAAAATGATCCAACTGATATGAACATTGATAGCACACAGATGCACCCACGTTCTTCATTCAATGCTTTCCTAGAAGTTGTCAAGCAAAGGAGCCTACCATGGGAA
Lepilaena_cylindrocarpa_YI1106         TGTGTGAATAAAACGAGTTCCGATCAACAAGCGAAGGGTAGGAAGCTCTGGGGTTTGGTAGTTTGCCATAATGCAACTCCGAGATTTATCCCGTTTCCTCTTAGGTATGCTTGTGAGTTTCTGCTTCAAGTTTTTGGTATACAACTGAACAAGGAGGTGGAATTGGCTACTCAAACAAGGGAGAAAAATATAATAAAAACACAAGCTTTTCTTTGCGACATGCTTCTCAGAGACTC{GT}CCTGTAGGGATATTTACTCAAACTCCTAATGTTATGGATCTAGT{AG}AAGTGTGATGGTGCTGCCCTATATTATAGAAACCAATTTTGGTTACTTGGTATAACACCTACTAA{AG}ATGCAGATAAAAGA{GT}ATG{AT}CCAACTGGCTT{CT}TGGAATA{CT}CATAATGG{CG}ACTACCGGATTAAGTAC{AC}GATAGCCTTTC{AG}GAGGCCGGTTGTCCAGGTGCACAAGTGCTGGGAGATGCTGT{AC}TG{CT}GGTATGGCTGCTGTCAAAATCACTGACAAGGACTTTATTTTCTGGTTTCGATCCCA{CT}ACAGCAAAAGAAATTAA{AG}TGGGGAGGAGCTAAAAATGATCCAAATGATATGAACACTGAT{AG}GCACACAGATGCA{CT}CCGCGTTCTTCATTCAATGCTTT{CT}CTAGAGGTTGTCATGCAAAGGAGCCTTCCATGGGAA
Lepilaena_preissii_YI1082              TGTGTGAATAACACGAGTTTTGATCAACAAGCGAAGGGTAGGAAGCTGTGGGGTTTGGTAGTTTGCCATAATGCAAATCCGAGATTTATCCCGTTTCCACTTAGGTATGCTTGTGAACTTCTGCTTCAAGTTTTTGGTATTCAACTGAACAAAGAGGTGGAATTGACTACTCAAAAAAGGGAGAAAAATATAATAAAAACACAAGCTTTTCTTTGCGACATGCTTCTCAGAGACTCACCTGTAGGGATATTTACTCAAACTCTTAATGTTATGGTTCTAGTGAAGTTTGATGGTGCTGCCCTATATTATAGAAACCAATTTTGGTTATTTGGTATAACACCTACTAAGATGCAGATAAAAGAGTTGACCAGGTGGCTTCTGGAATATCATAATGGCACTACCGGATTAAGTACTGATAGCATTTCAGAGGCAGGTTGTCCAGGTGCACAAGTGTTGGGAGATGTTGTCTGTGGTATGGCTGCTGTCAGAATCACCGACAAGGACTTTATTTTCTGGTTTCGATCCCACACAGCAAAAGAGATTAAATGGGGAGGAGCTAAAAATGATCCAACTGATATAAACACTGATAGCACACAGATGCATCCACGTTCTTCATTCAAGACTTTCCTAGAGGTTGTCAAGCAAAGGAGCCTTCCATGGGAA
Potamogeton_distinctus_YI1686          AATGTCAATGACGCAGGGTCTGATCAGCAATCAAAGGGTAGGAAGCTCTGGGGTTTGGTAGTTTGCCATCACACAACTCCAAAGTTTGTCCCCTTTCCTCTTAGGTATGCTTGTGAATTTCTGCTTCAAGTTTTTGGTATACAATTGAACAAGGAGGTGGAATTGTCTGCTCAAACAAGGGAGAAAGATATACTAAAGACACAAGCTGTTCTTTGCGACATGCTTCTCAGAGATCCGCCCGTGGGGATATTCACTCAAACTCCTAATATTATGGATCTGGTGAAGTGTGATGGTGCTGCTCTATATTATAGAAACCAGTTTTGGCTACTTGGAGTAACACCCACTAGGGTACAGATAAAAGAGATAGCTAGATGGCTTCTGGAGTGTCATGATGGCACTACTGGATTAAGTACGGATAGCATTTCAGAGGCAGGTTGTCCAGGTGCACAAGTGCTAGGAGATGCTGTCTGTGGTATGGCTGCTATCAAAATCACCAACAAGGACTTTATTTTCTGGTTTCGATCCCACACAGCAAAAGATATTAAATGGGGAGGAGCTAAAAATGATCCAACTGATATGAACATTGATAGCACGCAGATGCACCCACGTTCTTCATTCAACGCTTTCTTGGAAGTTGTCAAGCAACGGAGTCTTCCATGGGAA
Pseudalthenia_aschersoniana_YI1981     AATGTGAATGAGGCAGGGTCTGATCAACAACCAAAGGGTAGGAAGCTCTGGGGTTTGGTAGTCTGCCATCATTCAACTCCAAGGTTTGTCCCCTTTCCTCTTAGATATGCTTGTGAATTTCTGCTTCAAGTTTTTGGTATACAACTAAACAAGGAAGTGGAATTGGCTGCTCAAACAAGGGAGAAAAATATAATAAAGACGCAAGCTTTTCTTTGCGACGTACTTCTCAGAGATTCACCTGTAGGGATATTTACTCAAACTCCAAATGTTATGGATCTAGTAAAGTGTGATGGTGCTGCACTATATTTTAGAAACGAGTTTTGGTTGCTTGGGGTAACACCTACTAGGATACAAATAAAAGAGATGGCTAGATGGCTTCTGGAGTATCATGATGGCACCACTGGATTAAGTACGGATAGCATTTCAGAGGCAGGTTGTCCAGGTGCACAAGTTCTGGGAGATGCTGTCTGTGGTATGTCTGCTATCAAGATTACCAACAAGGACTTTATTTTCTGGTTTCGATCGCACACAGAAAAAGAAATTAAATGGGGAGGAGCTAAAAATGATCCAACAGATGTGAATACTGATAGCACACAAATGCATCCACGTTCTTCATTCAATGCTTTCCTGGAAGTTGTCAAGCAAAGGAGTCTTCCATGGGAA
Zannichellia_obtusifolia_YI1542        AATGAGAATGAGGCAGGGTCTGATCAACAACCAAAGGGTAGGAAGCTCTGGGGTTTGGTAGTTTGCCATCATTCAACTCCGAGGTTTGTCCCCTTTCCCCTTAGGTATGCTTGTGAATTTCTTCTTCAAGTTTTTGGTATACAACTGAACAAGGAAGTAGAATTGGCTGCTCAAACAAGGGAGAAAAATATAATAAAGACACAAGCTTTTCTTTGTGACGTGCTTCTCAGAGATTCACCTGTAGGAATATTTACTCAAACTCCAAACGTTATGGATCTAGTCAAATGTGATGGTGCTGCACTATATTATAGAAATGAGTTTTGGTTACTTGGGGTAACACCCACTAGGATGCAAATAAAAGAGATGGCTAGATGGCTTCTGGAGTATCATGATGGCACCACTGGATTAAGTACGGATAGCATTTCAGAGGCGGGTTGTCCAGGTGCACAAGCGCTGGGAGATGCAGTCTGTGGTATGGCTGCTATCAAAATTACCAACAAGGACTTTATTTTCTGGTTTCGATCCCACACAGCGAAAGAAATTAAATGGGGAGGAGCTAAAAATGATCCAACTGATATGAATACTGATAGCACACAAATGCATCCACGTTCTTCATTCAATGCTTTCCTAGAAGTTGTCAAGCAAAGGAGTCTTCCATGGGAA
Zannichellia_palustris_YI1473          AATGA{GT}AA{GT}G{AT}GGCAGGGTCTGATCAACAACCAAAGGGTAGGAAGCT{AC}TGGGGTTTGGTAGTTTGCCATCATTCAACTCCGA{AG}GTTTGTCCCCTTTCCTCTTAGGTATGCTTGTGAATTTCT{GT}CTTCAAGTTTTTGGTATACAACT{CG}AACAAGGAAGT{AG}GAATTGGCTGCTCAAACAAGGGAGAAAAATATAATAAAGACACAAGCTTTTCTTTG{CT}GACGTACTTCTCAGAGATTCACCTGTAGGGATATTTACTCAAACTCCAAAC{AG}TTATGGATCTAGTAAA{AG}TGTGATGGTGCTGCACTATATTATAGAAA{CT}GAGTTTTGGTTACTTGGGGTAACACC{CT}AC{CT}AGGAT{AG}CAAATAAAAGAGATGGCTAGATGGCTTCTGGAGTATCATGA{CT}GGCACCACTGGATTAAGTAC{AG}GATAGCATTTCAGAGGCAGGTTGTCCAGGTGC{AG}CAAG{CT}GCTGGGA{AG}ATG{CT}{AT}GTCTGTGGT{AT}TGGCTGCTATCAAAATTACCAACAAGGACTTTAT{CT}TT{CT}TGGTTTCGATCCCACACAGCAAAAGAAATTAAATGGGGAGGAGCTAAAAATGATCCAACTGATATGAATACTGATAGCACACA{AG}ATGCATCCACG{CT}TCTTCATTCAATGCTTTCCT{AG}GAAGTTGTCAAGC--------------------
Zannichellia_peltata_YI1470            AACGAGAATGAGGCAGGGTCTGATCAACCACCAAAGGGTAGGAAGCTCTGGGGTTTGGTAGTTTGCCATCATTCAACTCCGAGGTTTGTCCCCTTTCCTCTTAGGTATGCTTGTGAATTTCTTCTTCAAGTTTTTGGTATACAACTGAACAAGGAAGTAGAATTAGCTGCTCAAACAAGGGAGAAAAATATAATAAAGACACAAGCTTTTCTTTGCGACGTACTTCTCAGAGATTCACCTGTAGGGATATTTACTCAAACTCCAAACGTTATGGATCTAGTAAAATGTGATGGTGCTGCACTATATTATAGAAACGAGTTTTGGTTACTTGGGGTAACACCCACTAGGATGCAAATAAAAGAGATGGCTAGATGGCTTCTGGAGTATCATGATGGCACCACTGGATTAAGTACGGATAGCATTTCAGAGGCAGGTTGTCCAGGTGCACAAGCGCTGGGAGATGCAGTCTGTGGTATGGCTGCTATCAAAATTACCAACAAGGACTTTATTTTCTGGTTTCGATCCCACACAGCAAAAGAAATTAAATGGGGAGGAGCTAAAAATGATCCAACTGATATGAATACTGACAGCACACAAATGCATCCACGTTCTTCATTCAATGCTTTCCTAGAAGTTGTCAAGCAAAGGAGTCTTCCATGGGAA
;
END;