#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 5:31 GMT

TreeBASE (cc) 1994-2008

Study reference:
Lian T., Guo W., Chen M., Li J., Liang Q., Liu F., Meng H., Xu B., Chen J., Zhang
C., & Jiang L. 2015. Genome-wide identification and transcriptional analysis of
folate metabolism-related genes in maize kernels. BMC Plant Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S17972]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=9;
        TAXLABELS
            Arabidopsis_thaliana_GCST
            Escherichia_coli_GCST
            Homo_sapiens_GCST
            Mus_musculus_GCST
            Oryza_sativa_GCST
            Saccharomyces_cerevisiae_GCST
            Setaria_italica_GCST
            Sorghum_bicolor_GCST
            Zea_mays_GCST
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32447]

	TITLE 'Folate metabolism-related genes in maize GDCT';
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=434;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                         10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430    ]
[                                          .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .    ]
Arabidopsis_thaliana_GCST         MRGGSLWQLGQSITRRLAQSDKKVVSRRYFASEADLKKTALYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVAHMCGLSLKGKDCVPFLETLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDEHIYLVVNAGCRDKDLAHIEEHMKAFKSKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKEDLSKLYFGNFQILDINGSTCFLTRTGYTGEDGFEISVPDEHAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHISPVEAGLTWAIGKRRRAEGGFLGADVILQQLKDGPTIRRVGFFSSGPPARSHSEVHDESGNKIGEITSGGFSPNLKKNIAMGYVKSGQHKTGTKVKILVRGKPYEGSITKMPFVATKYYKPT--------------------------
Escherichia_coli_GCST             MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKPCGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREHGTEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGIGETAIVQIRNREMPVKVTKPVFVRNGKAVA----------------------------------------------------------------------
Homo_sapiens_GCST                 MQRAVSVVARLGFRLQAFPPALCRPLSCAQEVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVLDNALLALQGPTAAQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNPEVKLAGLAARDSLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYYTLK-------------------------------
Mus_musculus_GCST                 MHRIVSVVAPLGFRLQAQPLVQSRPLSSVQDVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVDSHLHTRRHCSLFDVSHMLQTKIFGCDRVKLLESVVVGDIAELRPNQGTLSLFTNEAGGILDDLIVSNTSEGHLYVVSNAGCRDKDLALMQDKVKEFQNRGLDVGLEVVENALLALQGPTATQVLQAGVTDDMKKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPATGAVHLATTLLKNPEVKLAGLAARDSLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRIAMDFPGAKIIVPQLKGEVQRRRVGLICEGAPVRAHSPILNTEGTVIGTVTSGCPSPSLKKNVAMGYVPFKYSRPGTQLLVEVRRKQQMTVVSKMPFVPTNYYTLK-------------------------------
Oryza_sativa_GCST                 MRGLLACATLARRAAGATSTARRHLAGAAEAAEAELKKTALYDFHVAHGGKMVPFAGWSMPIQYKDTIMDSTLNCRANGSLFDVSHMCGLSLHGRQAIPFLESLVVADVAALKDGTGTLTVFTNDRGGAIDDSVVTKVTDQHIYLVVNAGCRDKDLAHIGEHMEAFNKKGGDVKWHVHDERSLLALQGPLAAPTLQLLTKEDLSKMYFSDFKMIDINGYACFLTRTGYTGEDGFEISVPSENAVDLAKALLEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLSWAIGKRRKAEGGFLGADVILKQLQEGPKIRRVGLLSQGPPPRSHSEIVSNSGENIGEVTSGGFSPCLKKNIAMGYVKSGLHKAGTEFKVVVRGKSYDAVVTKMPFVPTKYYKPS--------------------------
Saccharomyces_cerevisiae_GCST     MSIIKKIVFKRFNSTLKKTALHDLHVSLGGTMVPYAGYSMPVLYKGQTHIESHNWTRTNAGLFDVSHMLQSKLSGPHSVKFLQRVTPTDFNALPVGSGTLSVLLNPQGGVVDDTIITKENDDNEFYIVTNAGCAERDTEFFHDELQNGSTLDCQWKIIEGRSLLALQGPKAKDVLEPLLSKTAPGKDLKELFFGQRHEFALKDGSLVQIARGGYTGEDGFEISIANEKAVEFAEQLLANPVMKPIGLAARDSLRLEAGMCLYGHELDESITPVEAALNWVISKSRRDLVDQKYWFNGYAKIMDQLNNKTYSKVRVGFKYLKKGPAARNGVKIFLPDAETEVGLVTSGSASPTLNNINIGQAYVQKGYHKKGTKLLVQVRNKFYPIELAKMPLVPTHYYKQ----------------------------------
Setaria_italica_GCST              MRGLLACATLARRAAAGSYGAAPARVRHLAGAAEAAEAELKKTALYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTVNCRTNGSLFDVAHMCGLSLKGRGAIPFLESLVIADVAGLRDGTGTLTVFTNEKGGAIDDSVVTKVTDQHIYLVVNAGCRDKDLAHIGAHMEAFNKKGGDVKWHIHDERSLLALQGPLAAPTLQLLTKEDLSKMYFSDFKMIDINGYECFLTRTGYTGEDGFEISVPSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLSWAIGKRRRAEGGFLGADVILKQLQEGPKIRRVGMFTQGPPARSHSELVSNSGENIGEVTSGGFSPCLKKNIAMGYVKSGLHKAGTEFKVVVRGKSYDAIVTKMPFVPTKYYKPS----------------------
Sorghum_bicolor_GCST              MRGLLACASTLARRATAPARVRHLAGAAEAAEAELKKTALYDFHVAHGGKMVPFAGWSMPIQYRDSIMDSTVNCRANGGLFDVAHMCGLSLRGRDAIPFLESLVIADVAALRDGTGTLTVFTNDKGGAIDDSVVTKVTDHHIYLVVNAGCRDKDLAHIEEHMEAFNKKGGDVKWHIHDERSLLALQGPLAAPTLQLLTKEDLSKMYFSDFKLIDINGYSCFLTRTGYTGEDGFEISVPSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLSWAIGKRRKSEGGFLGADVILKQLQEGPKIRRVGMITQGPPARSHSELVSSSGESIGEVTSGGFSPCLKKNIAMGYVKSGMHKAGTEFKVVVRGKSYDAVVTKMPFVPTKYYRPS---------------------------
Zea_mays_GCST                     MRGLLACATLARRAAASSAPARVRHLAGAAEAAEAELKRTALYDFHVAHGGKMVPFAGWSMPIQYRDSIMDSTVNCRANGSLFDVAHMCGLSLKGRGAIPFLESLVVADVAALRDGTGTLTVFTNEQGGAIDDSVIAKVTDHHIYLVVNAGCRDKDLAHIEAHMEAFNKKGGDVKWHIHDDRSLLALQGPLAAPTLQLLTKEDLSKMYFSDFKMIDINGYACFLTRTGYHFDSLSPLFEQYCKDCLISYFSYTGEDGFEISVPSENAVDLAEAILERSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLSWAIGKRRRAEGGFLGADVILKQLQEGPKIRRVGMVTQGPPARSHSELVSGSGERIGEVTSGGFSPCLKKNIAMGYVKSGMHKAGTELKVVVRGKSYDAVVTKMPFVPTKYYKPS--
;
END;