#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 18, 2025; 21:24 GMT

TreeBASE (cc) 1994-2008

Study reference:
Lian T., Guo W., Chen M., Li J., Liang Q., Liu F., Meng H., Xu B., Chen J., Zhang
C., & Jiang L. 2015. Genome-wide identification and transcriptional analysis of
folate metabolism-related genes in maize kernels. BMC Plant Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S17972]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=11;
        TAXLABELS
            Arabidopsis_thaliana_GCH1
            Escherichia_coli_GCH1_
            Homo_sapiens_GCH1
            Mus_musculus_GCH1
            Oryza_sativa_GCH1
            Rattus_norvegicus_GCH1
            Saccharomyces_cerevisiae_GCH1
            Setaria_italica_GCH1
            Sorghum_bicolor_GCH1
            'Zea mays GCH1-1'
            'Zea mays GCH1-2'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32448]

	TITLE 'Folate metabolism-related genes in maize GTPCHI';
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=480;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                         10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480]
[                                          .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
Arabidopsis_thaliana_GCH1         MGALDEGCLNLELDIGMKNGCIELAFEHQPETLAIQDAVKLLLQGLHEDVNREGIKKTPFRVAKALREGTRGYKQKVKDYVQSALFPEAGLDEGVGQAGGVGGLVVVRDLDHYSYCESCLLPFHVKCHIGYVPSGQRVLGLSKFSRVTDVFAKRLQDPQRLADDICSALQHWVKPAGVAVVLECSHIHFPSLDLDSLNLSSHRGFVKLLVSSGSGVFEDESSNLWGEFQSFLMFKGVKTQALCRNGSSVKEWCPSVKSSSKLSPEVDPEMVSAVVSILKSLGEDPLRKELIATPTRFLKWMLNFQRTNLEMKLNSFNPAKVNGEVKEKRLHCELNMPFWSMCEHHLLPFYGVVHIGYFCAEGSNPNPVGSSLMKAIVHFYGFKLQVQERMTRQIAETLSPLVGGDVIVVAEAGHTCMISRGIEKFGSSTATIAVLGRFSSDNSARAMFLDKIHTTNALKTESSSPF--------------
Escherichia_coli_GCH1_            MPSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAVRHHN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Homo_sapiens_GCH1                 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRSEEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDAIFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEFLTLIRS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Mus_musculus_GCH1                 MEKPRGVRCTNGFSERELPRPGASPPAEKSRPPEAKGAQPADAWKAGRHRSEEENQVNLPKLAAAYSSILLSLGEDPQRQGLLKTPWRAATAMQYFTKGYQETISDVLNDAIFDEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEFLTLIRS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Oryza_sativa_GCH1                 MAGSATAPDGYMQKVRDIVPVALFPEVGVDKRTGSAGGTGGQVVVRDIDLFSYCESCLLPFSIQFHVGYVPSGGRVVGLSKLSRVADVFAKRLQNPQRLASEVCGALHASIQPAGVAVALQCWHIPLPENLKCKTLQGWISTSHSSRSGVFEGESSSFWNDFSALLKLRGIDMERDSHSASIAWCPLRSHDVPVCNGHCKKATTNGAISPKSVPAPSNMVSAVSSMLLSLGEDPFRKELVGTPQRYVQWLMKFRACNLDVKLNGFTLNNLSVYQSPAGDAADHRAIHSELHLPFCAQCEHHLLPFYGVVHIGYLDGGDGEVIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHCGAIVVVEANHICMISRGIEKIRSSTATIAVLGQFLTDPSAKARFLQNVVDTTGLAV------------------------------------------------------------------
Rattus_norvegicus_GCH1            MEKPRGVRCTNGFPERELPRPGASRPAEKSRPPEAKGAQPADAWKAGRPRSEEDNELNLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDVLNDAIFDEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEFLTLIRS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Saccharomyces_cerevisiae_GCH1     MHNIQLVQEIERHETPLNIRPTSPYTLNPPVERDGFSWPSVGTRQRAEETEEEEKERIQRISGAIKTILTELGEDVNREGLLDTPQRYAKAMLYFTKGYQTNIMDDVIKNAVFEEDHDEMVIVRDIEIYSLCEHHLVPFFGKVHIGYIPNKKVIGLSKLARLAEMYARRLQVQERLTKQIAMALSDILKPLGVAVVMEASHMCMVSRGIQKTGSSTVTSCMLGGFRAHKTREEFLTLLGRRSI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Setaria_italica_GCH1              MGALEEAHLAAAVAAACACEEEDDDLELLGGEAEPLAAVAAADAMEPAIRALLVGLGEDERREGLRRTPKRVAKAFRDGTRGYRQKVKDIVQGALFPEVGVDKRTGSAGGTGGQVVVRDIELFSYCESCLLPFSIQCHVGYVPSGGRVVGLSKLSRVSDVFAKRLQNPQRLANEVCGALHASIQPAGVAVALQCWHIPLPENLECKTLQGWIRTSHSSRSGVFEGENSTFWSDFLALLKLRGIDMEVDNHSASIPWCPLRSHEVPLSNGHCKKSSTNGMVSAVTSMLLSLGEDPLRKELLGTPQRYVQWLMKFRACNLDVKLNGFTLGNVSMYERPGGGKADHGAIHSELHLPFCAQCEHHLLPFYGVVHIGYFDDGSGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGVMVVVEANHICMISRGVEKIRSNTATIAVLGQFLTDPSAKACFLQNVLDTAGSAV------
Sorghum_bicolor_GCH1              LDTATATAMGALEEAYLADAACACEEEEEESDDLGLLAGDAAAAGDAIEPAVRALLLGLGEDDRREGLRRTPKRVAKAFRDGTRGYRQKVKDIVQGALFPEVGVDKRTGSAGGTGGQVVVRDIELFSYCESCLLPFSIQCHVGYVPSGGRVVGLSKLSRVSDVFAKRLQNPQRLANEVCGALHASIQPAGVAVALQCWHIPLPENLECKALQGWIRTSHSSHSGVFEGDSSTFWSDFLALLKLRGIDMEAEDHSVSIPWCPLRSHEAPLSNGLCKKSSTNGMVSAVTSMLLSLGEDPLRKELLGTPQRYVQWLMKFRACNLLDVKLNGFTLSNVSLYERPGGGTTDHGAIRSELHLPFCAQCEHHLLPFYGVVHIGYFENGSGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRSNTATIAVLGQFLTDPSAKACFLQNVLDTAGSAI--
'Zea mays GCH1-1'                 MDTDTATAMGALEEAHLAAAACACEEEEESDYIGFLAGEAAAGDAVEPAVRALLLGLGEDDRREGLLRTPKRVAKAFRDGTRGYRQKVKDIVQGALFPEVGVDKRTGSAGGTGGQVVVRDIELFSYCESCLLPFSIQCHVGYVPSGGRVVGLSKLSRVSDVFAKRLQNPQRLANEICGALHASIQPAGVAVALQCWHIPLPENLECKTLEGWIRTSHSSRSGVFEGESSTFWSDFLALVKLRGIDVEAKDRTVSIPWCPLRSHEVPLSNGLCKKNSTNGMVSAVTSMLLSLGEDPLRKELLGTPQRYVQWLMKFKACNLLDVKLNGFTLSNVSLYERTGGGTTDHGAIRSELHLPFCAQCEHHLLPFYGVVHIGYFGNGSGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRSNTATIAVLGQFLADPSAKACFLQNVLDSVGSAV----
'Zea mays GCH1-2'                 MGALEGAHLAAVACACDDDEEQSDCIPLLAGDAATAADAMEPAVRALLLGLGEDDRREGLRRTPKRVSKAFRDGTRGYRQKVKDIVRGALFPEVGVDKRTGSAGGTGGQVVVRDIELFSYCESCLLPFSIQCHVGYVPSGGRVVGLSKLSRVSDVFAKRLQNPQRLANEVCGALHASIQPAGVAVALQCWHIPLPENLECKTLQGWIRTSRSCRSGLFEGESSTLWSDFLALVKLRGIDMEAGTGDRCVSVPWCPLRSREVPLSNGLCKKSSTNGMVSAVASMLLSLGEDPLRKELLGTPQRYVQWLMKFRARNLLDVKLNGFTLGNASLHERPGGGTADHGHGSIRTELHLPFCAQCEHHLLPFYGVVHIGYLDKGSGEGIIDRSHFQALVRFYGCKLQVQERMTRQIAEAVHSVSRNGAMVVVEASHMCMISRGVEKIRSNTATVAVLGHFLTDPSAKARFLQNVLRTAGSAV-----
;
END;