#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 22:45 GMT TreeBASE (cc) 1994-2008 Study reference: Light J., & Hafner M. 2007. Cophylogeny and disparate rates of evolution in sympatric lineages of chewing lice on pocket gophers. Molecular Phylogenetics and Evolution, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1910] BEGIN TAXA; TITLE TaxonLabelSet13315; DIMENSIONS NTAX=17; TAXLABELS Geomydoecus_coronadoi_CNMA41904 Geomydoecus_coronadoi_LSUMZ34344 Geomydoecus_coronadoi_LSUMZ34344b Geomydoecus_coronadoi_LSUMZ34903 Geomydoecus_coronadoi_LSUMZ36125 Geomydoecus_coronadoi_LSUMZ36293 Geomydoecus_craigi Geomydoecus_fulvescens Geomydoecus_mexicanus Geomydoecus_perotensis_CNMA41905 Geomydoecus_perotensis_LSUMZ34344 Geomydoecus_perotensis_LSUMZ34903 Geomydoecus_traubi__LSUMZ36125 Geomydoecus_traubi_CNMA41826 Geomydoecus_traubi_LSUMZ36065 Geomydoecus_veracruzensis_CNMA41823 Geomydoecus_veracruzensis_LSUMZ36069 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3935] TITLE EF1a_DNA; LINK TAXA = TaxonLabelSet13315; DIMENSIONS NCHAR=347; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Geomydoecus_coronadoi_CNMA41904 TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCTTGGCTCAAGTTATAGTCCTTAACCATCCCGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCTGGAGATGCAGCCATTGTCAATTTGGTTCCATCTAAACCCATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_coronadoi_LSUMZ34344 TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCTTGGCTCAAGTTATAGTCCTTAACCATCCCGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCTGGAGATGCAGCCATTGTCAATTTGGTTCCATCTAAACCCATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_coronadoi_LSUMZ34344b TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCTTGGCTCAAGTTATAGTCCTTAACCATCCCGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCTGGAGATGCAGCCATTGTCAATTTGGTTCCATCTAAACCCATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_coronadoi_LSUMZ34903 TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCTTGGCTCAAGTTATAGTCCTTAACCATCCCGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCTGGAGATGCAGCCATTGTCAATTTGGTTCCATCTAAACCCATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_coronadoi_LSUMZ36125 TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCTTGGCTCAAGTTATAGTCCTTAACCATCCCGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCTGGAGATGCAGCCATTGTCAATTTGGTTCCATCTAAACCCATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_coronadoi_LSUMZ36293 TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCTTGGCTCAAGTTATAGTCCTTAACCATCCCGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCTGGAGATGCAGCCATTGTCAATTTGGTTCCATCTAAACCCATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_craigi TGAAAAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCTGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCCTGGCTCAAGTTATCGTCCTCAACCATCCAGGACAGATTTCAAATGGTTACACTCCTGTATTGGATTGCCACACTGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCCGGAGACGCAGCCATCGTCAATTTGGTTCCATCTAAACCCATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_fulvescens TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCCTGGCTCAAGTTATAGTCCTCAACCATCCAGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCAGGAGATGCAGCCATCGTCAATTTGGTTCCATCTAAACCTATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_mexicanus TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCCTGGCTCAAGTTATAGTCCTCAACCATCCAGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCAGGAGATGCAGCCATCGTCAATTTGGTTCCATCTAAACCTATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_perotensis_CNMA41905 TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCCTGGCTCAAGTTATAGTCCTCAACCATCCAGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCAGGAGATGCAGCCATCGTCAATTTGGTTCCATCTAAACCTATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_perotensis_LSUMZ34344 TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCCTGGCTCAAGTTATAGTCCTCAACCATCCAGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCAGGAGATGCAGCCATCGTCAATTTGGTTCCATCTAAACCTATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_perotensis_LSUMZ34903 TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCCTGGCTCAAGTTATAGTCCTCAACCATCCAGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCAGGAGATGCAGCCATCGTCAATTTGGTTCCATCTAAACCTATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_traubi__LSUMZ36125 TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCCTGGCTCAAGTTATAGTCCTCAACCATCCAGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCAGGAGATGCAGCCATCGTCAATTTGGTTCCATCTAAACCTATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_traubi_CNMA41826 TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCCTGGCTCAAGTTATAGTCCTCAACCATCCAGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCAGGAGATGCAGCCATCGTCAATTTGGTTCCATCTAAACCTATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_traubi_LSUMZ36065 TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCCTGGCTCAAGTTATAGTCCTCAACCATCCAGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCAGGAGATGCAGCCATCGTCAATTTGGTTCCATCTAAACCTATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_veracruzensis_CNMA41823 TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCTTGGCTCAAGTTATAGTCCTTAACCATCCCGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCTGGAGATGCAGCCATTGTCAATTTGGTTCCATCTAAACCCATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT Geomydoecus_veracruzensis_LSUMZ36069 TGAAGAACGTGTCCGTTAAAGAATTGCGCAGAGGATACGTAGCAGGAGATTCTAAAAACAATCCTCCTAAAGCTGCTGCCGATTTCTTGGCTCAAGTTATAGTCCTTAACCATCCCGGACAGATTTCAAACGGTTATACTCCTGTATTGGATTGCCACACCGCTCATATAGCATGCAAGTTTGCTGAAATTAAAGAAAAATGTGATCGTCGTACGGGTAAAACAACCGAAGAGAATCCGAAAAGTATCAAATCTGGAGATGCAGCCATTGTCAATTTGGTTCCATCTAAACCCATGTGTGTGGAATCTTTCTCTGAATTTCCACCTCTCGGTCGTTTTGCCGTTCGT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = EF1a_DNA) = N: 1-347; CODONPOSSET CodonPositions (CHARACTERS = EF1a_DNA) = N: 1-347; END;