#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 18, 2025; 21:25 GMT

TreeBASE (cc) 1994-2008

Study reference:
Wang Y., Wei X., Huang J., & Wei J. 2017. Modification and functional adaptation
of the MBF1 gene family in the lichenized fungus Endocarpon pusillum under environmental
stress. Scientific Reports, 7: 16333.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S21188]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=39;
        TAXLABELS
            Arabidopsis_thaliana_AEC10155
            Arabidopsis_thaliana_AEE76905
            Arabidopsis_thaliana_AEE79817
            Aspergillus_clavatus_EAW09457
            Aspergillus_fumigatus_EAL92714
            Aspergillus_kawachii_GAA84384
            'Aspergillus nidulans XP_660600'
            'Aspergillus niger XP_001400367'
            'Aspergillus oryzae XP_001818334'
            Aspergillus_terreus_EAU38363
            'Bombyx mori NP_001036824'
            Caenorhabditis_elegans_CAB09112
            Caenorhabditis_remanei_EFO93790
            Cladonia_macilenta_KE598558
            Cladonia_metacorallifera_KI911114
            Drosophila_melanogaster_AAF49449
            Endocarpon_crystallinum_KX364209
            Endocarpon_nigromarginatum_KX364211
            Endocarpon_pusillum_AEH41465.1
            Endocarpon_sinense_KX364210
            Gyalolechia_flavorubescens_KE546969
            Homo_sapiens_O60869
            'Kluyveromyces lactis XP_456195'
            Lasallia_putulata_JYIL01003806
            Loa_loa_EFO23139
            Methanocaldococcus_fervens_ACV25177
            Mus_musculus_Q9JMG1
            'Neurospora crassa XP_960690'
            'Nicotiana tomentosiformis XP_009631709'
            Penicillium_rubens_CAP85687
            Saccharomyces_cerevisiae_DAA11064
            'Schizosaccharomyces pombe NP_595650'
            'Sulfolobus solfataricus NP_341818'
            Thermoproteus_tenax_CBZ41801
            Trichinella_spiralis_EFV53188
            Trichoderma_reesei_EGR47693
            Triticum_aestivum_ACU43593
            Umbilicaria_muehlenbergii_KK106986
            Zygosaccharomyces_rouxii_CAR26769
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M44979]

	TITLE 'Multiprotein-bridging factor 1 (MBF1)';
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=122;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                  10        20        30        40        50        60        70        80        90        100       110       120  ]
[                                                   .         .         .         .         .         .         .         .         .         .         .         .  ]
Arabidopsis_thaliana_AEC10155              VVIRK---ANAAAKRDEKTVNAARRSGADIETVRKFNAGTTSLNTKMLDDDTENLTHVPTELKKAIMQARKKLTQSQLAQIINEKPQVIQEYEGKAIPNQQILSKLERALGAKLRGKK----
Arabidopsis_thaliana_AEE76905              VVIRK---PNAAAKRDEKTVNAARRSGADIETVRKFNAGSTSLNTKKLDDDTENLSHVPTELKKAIMQARKKLTQSQLAHLINEKPQVIQEYEGKAIPNQQILSKLERALGAKLRGKK----
Arabidopsis_thaliana_AEE79817              VVLHK---QKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSPVINTKKLEEETEPAAMVKAEVRLMIQKARKKMSQADLAKQINERTQVVQEYEGKAVPNQAVLAKMEKVLGVKLRGK-IGK-
Aspergillus_clavatus_EAW09457              VTRIGGAAPRETVVKGKSALNAAQRQGLIIGTEKKYATGNEGQHLTKVDRSDDIVKPVGLQVADAIKKRRYKMTQKELATKCNTTITIVQDFEGTAAPDQKVLSAMERVLNIKLRGADIGKE
Aspergillus_fumigatus_EAL92714             VTRIGGAAPRETVVRGKSALNAAQRQGLVIATEKKYATGNEGQHLTKVDRSDDIVKPVGLQVADAIKKRRYKMTQKELATKCNTTITVIQDFEGTAAPDQKVLSAMERVLNIKLRGSDIGKE
Aspergillus_kawachii_GAA84384              VTRIGGPATRETVVKGKSALNAAQRQGLVIGTEKKYATGNEGQHLTKVDRSDDIVKPVGYQVADAIKKRRYKMTQKELATKCNTTITVVQDFEGTAAPDQKVLSAMERVLNVKLRGTGIGQE
'Aspergillus nidulans XP_660600'           VTRIGGPVVRETVIKGKSALNAAQRQGLVVGTEKKFASGNEGQHLTKVDRSDDIVKPVGLQVADAIKKRRYKMTQKELATKCNTTVTVIQDFEGTAAPDQKVLSAMERVLNIKLRGSDIGKE
'Aspergillus niger XP_001400367'           VTRIGGPATRETVVKGKSALNAAQRNGLVIGTEKKYATGNEGQHLTKVDRSDDIVKPVGYQVADAIKKRRYKMTQKELATKCNTTITVVQDFEGTAAPDQKVLSAMERVLNVKLRGTGIGQE
'Aspergillus oryzae XP_001818334'          TTRIGGAAPRETVVKGKSALNAAQRQGLVIGTEKKYATGNEGQHLTKVDRSDDIIKPVGYQVADAIKKRRYKMTQKELATKCNTTVTVVQDFEGTATPDQKVLSAMERVLNIKLRGSDIGKE
Aspergillus_terreus_EAU38363               VTRIGGPAPRETVVKGKSALNAAQRQGLVIGTEKKYATGNEGQHLTKVDRSDDIVKPVGMKVADAIKKRRYKMTQKELATKCNTTPGVIQEFEGTATPDQKVLSAMERVLNVKLRGNDIGAE
'Bombyx mori NP_001036824'                 VTILR--PPKASALKTEQAVNAARRQGIPVDTQQKYGAGTTTKNTAKLDRETEELRHIPLDLGKLIMQGRKGMSQKDLATKICEKPQIVNDYEGRGIPNNIVLGKIERAIGIKLRGKERGQP
Caenorhabditis_elegans_CAB09112            VTMIT--GPVNKTLKSAAQLNAAQRAGVDISTEKKTMSGGANKNTLRLDEETEELHHVALSLGKVMQQARKGWTQKDLSTQINEKPQVVGEYEGKAVPNQQIMAKMERALGVKLRGKDIGMP
Caenorhabditis_remanei_EFO93790            VTMIT--GPVNKTLKSASQLNAAQRAGVEISTEKKTMSGGANKNTLRLDEETEELHHVTLSLGKVMQQARKGWTQKDLSTQINEKPQVVGEYEGKAVPNQQILAKMERALGVKLRGKDIGKP
Cladonia_macilenta_KE598558                VTKIGGAAQRETVVRGKGALNAAQRSGAIVGTEKKFATGNEGQRLTKVDRSDDIIAPVPAEIGQNIRNRRYKMTQAQLAQKVNCQANDIKLLEGDAIKNQGLLNRVARVLKV---SPKTGLP
Cladonia_metacorallifera_KI911114          VTKIGGAAQRETVVRGKGALNAAQRSGAIVGTEKKFATGNEGQRLTKVDRSDDIIAPVPAEIGQNIRNRRYKMTQAQLAQKVNCQANDIKLLEGDAIKNQGLLNRVARVLKV---SPKTGLP
Drosophila_melanogaster_AAF49449           VTVLR--APKSSTLKTESAVNQARRQGVAVDTQQKYGAGTTTKNTAKLDRETEELRHIPLDVGKLIQQGRKGLSQKDLATKICEKQQVVTDYEGRGIPNNLILGKMERVLGIKLRGKERGQP
Endocarpon_crystallinum_KX364209           FTRIGGGASRPKTIKTKAELNAAMRSG-DVSSQKKFGSANEGQRLTKVANTDGIIKPVHPDAKIIPAEARKGWEQKDLARLCNIDVSIVQKFEGKETPNQKALGAMERHLGISLRGDTFGKP
Endocarpon_nigromarginatum_KX364211        FTRIGGGTQRPITIKSQSELNAAMRSG-GVSSQKRFGSANEGQRLTKVANTDEIIKPVHPDAKTIPAAARKGWEQKDLARLCNIDVSIVQKFEGKETPNQKALGAMERHLGISLRGDTFGKP
Endocarpon_pusillum_AEH41465.1             FTHIGGGAPRSKTIKSKAELNAAMRSG-DVSSQKRFGSANEGQRLTKIANTDGIIKPVHPDAKTVPGKARKGWEQKDLARLCNIDVSIVQKFEGKETPSQKALGAMERHLGISLRGDTFGKE
Endocarpon_sinense_KX364210                FTRIGGGAPHSKTIKSKAELNAAMRAG-DVSSQKRFGSANEGQRLTKVANTDGIIKPVHPDAKIIPAKERKGWEQKDLARLCNIDVSIVQKFEGKETPNQKALGAMERHLGISLRGNTFGKP
Gyalolechia_flavorubescens_KE546969        VTKIGGASQRETVVRGKAALNAAQRSGNIVGTEKKFTAGNEGQRLTKVDRSDDIVPVVSADIGAAIRNRRYKMTQADLAKKCNVPANDIKTLEGQAIKNQQLLNKVARVLKI---SPKTGKP
Homo_sapiens_O60869                        VTVLR--GPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQITKNTAKLDRETEELHHVTLEVGKVIQQGRKGLTQKDLATKINEKPQVIADYEGRAIPNNQVLGKIERAIGLKLRGKDIGKP
'Kluyveromyces lactis XP_456195'           STVIGGGGPRQQVARTQGQINEARRSGMVLSVDKKYGTTNEGQRLTKVDRETDIVKPIDVSVGKAIQKGRKNLTQKDLATKINEKPTIVNDYEGRGIPNQQILGKMERALGIKLRGKNIGEP
Lasallia_putulata_JYIL01003806             VTKIGASSQRETVVRGKGALNAAARSGTIIGTEKKFATGNEGQRLTKVDRADDIVAPMDGKIGGLIAARRYKLTQSELAKKINVDVAKIKKLEPNDVLDAAVLGKVEKALNMRFRGAKAGQP
Loa_loa_EFO23139                           VTILH--GPAQRTLRTAAELNAAQRRGMAIETSKKMMAGGATKNTARLDEETEELHHVSLTLGKVMQQARKEWTQKDLATHINEKPQVVAEYEGKAVPNQQILAKMERALGVKLRGKDMGQP
Methanocaldococcus_fervens_ACV25177        CELCG---KLYKVIIEGSEMQVCKECAKFGKSPKTYSRLGTNMQTKKPAKRRRDIFDLREDYGDVIREARRGLSIEDLAKKLKMKASTLQKFEYELEPNEREIKILEKELKINLEGFTLGDF
Mus_musculus_Q9JMG1                        VTVLR--GPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQITKNTAKLDRETEELHHVTLEVGKVIQRGRKGLTQKDLATKINEKPQVIADYEGRAIPNNQVLGKIERAIGLKLRGKDIGKP
'Neurospora crassa XP_960690'              AVKIGGAGPRETVVRGKSALNAAQRSGNIIATEKKYAAGNEGQRLTMVDRSDDIVKPVSKEVGAAIQKARKAMTQKELATRCNSTQAIIAQYEGEGVPDQKLLGNLERVLNVKLRGSDIGKP
'Nicotiana tomentosiformis XP_009631709'   VVIRK---PTAAARKDEKAVNAARRSGAEIETIRKSAAGTTTLNTRKLDEDTENLAHVPTELKKAIMQARKKLTQAQLAQLINEKPQIIQEYEGKAIPNQQIISKLERALGAKLRGKK----
Penicillium_rubens_CAP85687                TTKIGGAQPRETVVKGKSALNAAQRSG-SVYTEKKYTTGNEGQHLTKVDRSDDIVKPVGHAVADAIKRRRYKMTQKELATKCNTTITIVQDFEGTATPDQKVLGSMERVLNIKLRGSDIGSE
Saccharomyces_cerevisiae_DAA11064          NTIIGGSGPRANVARSQGQINAARRQGLVVSVDKKYGSTNEGQRLTKVDRETDIVKPLDPNVGRAISRARKKMSQKDLATKINEKPTVVNDYEARAIPNQQVLSKLERALGVKLRGNNIGSP
'Schizosaccharomyces pombe NP_595650'      VTKIGGPGARTHVAKTQSQINSARRAGAIVGTEKKYATGNAGQHLTKIDRENEVKPPTGRSVAQAIQKGRKGWAQKDLSQRINEKPQVVNDYEGRAIPNQQVLSKMERALGIKLRGQNIGAP
'Sulfolobus solfataricus NP_341818'        CELCG---KGITVSYEGSIITVCNSCYDRIRKHAVIVKADRKKATLKPPKMENAEL-IVTDYYKIIKTARLGISQQQLAQKLKVSENIVKRFEGKLKPTISQARQLEKILGIKLTGLTLGDV
Thermoproteus_tenax_CBZ41801               CDICG---EPYVIKLDNAVLHVCERCARSYGGTVKVESPPQQRRITKRGAEPRY---VVEEYAEVIKRARLGLSREALASYIGVKESVLKRIEGQLMPDIELARKLEKALGVKLRELTLGDV
Trichinella_spiralis_EFV53188              VTILR--QPRKSEARQEKVVRAAQRSGQEIETSKKFNAATMSASVSKLSSDLEEFHHVGMEVGRLIQRGRKKWTQAELAKQINEKPSVIVEYEGRAVVNNQILGKIERAIGIKLRGKDKGQP
Trichoderma_reesei_EGR47693                ATKIGGASDRETVIRGKSALNAAQRAGAAIATEKKYSTANEGQRLTKVDRSDDIIKPVGKEVGKAIEQGRPTMTQAELGKKIGETAATVASYEGTATPDQNILSKMERVLNVKLRGANIGAP
Triticum_aestivum_ACU43593                 VVLRR---PKAADLKSAKAVNQALRTGAPVETVRKAAAGTVAAPARKLDEMTEPAGLVGGDVRAAIQKARKGWSQAELAKRINERAQVVQEYEGKAVPVQAVLAKMERALEVKLRGKAVGAP
Umbilicaria_muehlenbergii_KK106986         VTKIGAASQRETVVRGKGALNAAARSGTIIGTEKKFAVGNEGQRLTKVDRADDIVAPMDAKIGGLIAARRYKMTQSELAKKINVDVAKIKKLEPNDVLDGAVLGKVEKALNMRFRGAKAGQP
Zygosaccharomyces_rouxii_CAR26769          TTVIGGSGPRANVARSQGQVNEAKRSGLVLSVDKKYGTTNEGQRLTKVDRETDIVKPLDTEVGKIISRARKKLSQKDLATRINEKPTVVNDYEARAIPNQQVLSKIERTLGVKLRGKNIGEP
;
END;