#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 0:33 GMT

TreeBASE (cc) 1994-2008

Study reference:
Missbach S., Aleksic D., Blaschke L., Hassemer T., Lee K., Mansfeld M., Haenske J.,
Handler J., & Kammerer R. 2018. Alternative splicing after gene duplication drives
CEACAM1-paralog diversification in the horse. BMC Evolutionary Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S21963]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=11;
        TAXLABELS
            Equus_caballus_CEACAM1
            Equus_caballus_CEACAM19
            Equus_caballus_CEACAM41
            Equus_caballus_CEACAM42
            Equus_caballus_CEACAM43
            Equus_caballus_CEACAM45
            Equus_caballus_CEACAM50
            Equus_caballus_CEACAM53
            Equus_caballus_CEACAM54
            Homo_sapiens_HsaCEACAM1
            Homo_sapiens_HsaCEACAM3
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M44794]

	TITLE Equine_CEACAM_TM_domains;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=180;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                   10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180]
[                                    .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
Equus_caballus_CEACAM1      A---TGATCCAACACTAGGAAGTTCT-----------GGACTCTCA--GCTGGGG------------CTATTGGTGGCATCGTGATTGGAGTGCTGGCCG--GGGTCGCTCTGATAGCA---GCCCTGGTGT-ACTTTCTGTACATCAG-----AAAGACTGGAGG--------------
Equus_caballus_CEACAM19     A-------AAAGCATCAGGAACTGCCCATTACACAACTGCCTATGAGTGCTGGGA------------TCATGGCCGCCATCATCATTGGATCTCTTGCTGCCGGGTCCCTCT----------TCATTGGCATCATTGCCTACATCCTGGTGACAAGAGGCTGGAGGAGCCAGAGCCACAG
Equus_caballus_CEACAM41     C------------AGAAAAAAACACCACA--------GGCCTCCCT--GTGAGGG------------CCATTGCGTGCATCGTGATTGGGGTCCTGGTCG--GGGTGGTGCTAGTGGCT---GCCCTGGGGT-ATTTCCTGTTCCTTAC-----AAGGACTAGCAG--------------
Equus_caballus_CEACAM42     A---TGATCCAACACAAAGAAATTCTGCT--------GGCCTCTCA--GGTGGGG------------CCATTGGTGGCATCATGGTTGGAGTCCCAGCTG--TGGTAGCTCTGATAGCG---GTCCTGGTGT-ACTGCCTGTGTATGAG-----AAAGACTCGAGA--------------
Equus_caballus_CEACAM43     A---TGATCCAACACTAGGAAGTTCT-----------GGACTCTCA--GCTGGGG------------CTATTGGTGGCATCGTGATTGGAGTGCTGGCCG--GGGTCGCTCTGATAGCA---GCCCTGGTCT-ACTTTCTGTACATCAG-----AAAGACTTCAGG--------------
Equus_caballus_CEACAM45     A---TGCTCCAACACCAGGAAATTCTGCT--------GGCCTCTCG--GCTGGGG------------TCATTGACAGCATCGTGGTTGGAGTCCTGGCTG--GGGTAACTCTGGCA------GCTCCGCTTC-ACTTTCTTTATATCTG-----AAAGATTTGAGG--------------
Equus_caballus_CEACAM50     A---TGACCAAACA---------TCTGCT--------GGCCTCTCA--GCTGGGG------------CTGTTGGCGGCATCGTGGTTGGAGTCTTGGCTG--GGGTAGCTCTGATAGCA---GCACTGGTGT-ACAGTCGGTGTAGCAG-----AAAGGCTGAAGA--------------
Equus_caballus_CEACAM53     A---TGTTCCAACACAAGGAAATGCTGCT--------GGCCTCTCA--GCTGGGG------------CTATTGACGACATCATGGTTGGATTCCTGGCTG--GGATAGCTCTGAAG------GCTCCGGTGT-ACTTTCTGCACATTTA-----AAACATTAGAGA--------------
Equus_caballus_CEACAM54     A---TGATTC------AGGAAATTCTGCT--------GGCCTCTCA--GCTGGGGTCATTGACAGCATCATTGACAGCATCGTGGTCGGAGTCCTGGCCG--GGGTAGCTCTGATA------GCTCCGGTGT-ACTTTCTACATATCTG-----AAACATTGGACG--------------
Homo_sapiens_HsaCEACAM1     ATAATGCTCTACCACAAGAAAAT--------------GGCCTCTCA--CCTGGGG------------CCATTGCTGGCATTGTGATTGGAGTAGTGGCCC--TGGTTGCTCTGATAGCAGTAGCCCTGGCAT-GTTTTCTGCATTTCGG-----GAAGACCGGCAG--------------
Homo_sapiens_HsaCEACAM3     A---------------AGAAAATGCCCCA--------GGCCTTCCT--GTGGGGG------------CCGTCGCCGGCATCGTGACCGGGGTCCTGGTCG--GAGTGGCGCTGGTGGCC---GCGCTGGTGT-GTTTCCTGCTCCTTGC-----CAAAACTGGAAG--------------
;
END;