#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 0:30 GMT TreeBASE (cc) 1994-2008 Study reference: Lin Y., Fang S., Chung C., Chen M., & Chen C. 2020. SUMO Protease SMT7 Modulates Ribosomal Protein L30 and Regulates Cell-size Checkpoint Function. The Plant Cell, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S25352] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=30; TAXLABELS Arabidopsis_thaliana_ELS1 Arabidopsis_thaliana_ELS2 Arabidopsis_thaliana_ESD4 Arabidopsis_thaliana_FUG1 Arabidopsis_thaliana_OTS1 Arabidopsis_thaliana_OTS2 Arabidopsis_thaliana_SPF1 Arabidopsis_thaliana_SPF2 Chlamydomonas_reinhardtii_SMT7 Homo_sapiens_SENP1 Homo_sapiens_SENP2 Homo_sapiens_SENP3 Homo_sapiens_SENP5 Homo_sapiens_SENP6 Homo_sapiens_SENP7 Oryza_sativa_ELS1 Oryza_sativa_ELS2 Oryza_sativa_FUG1 Oryza_sativa_OTS3 Oryza_sativa_SPF1 Saccharomyces_cerevisiae_ULP1 Saccharomyces_cerevisiae_ULP2 Zea_mays_ESD4a Zea_mays_ESD4b Zea_mays_ESD4c Zea_mays_ESD4d Zea_mays_OTS1a Zea_mays_OTS1b Zea_mays_OTS1c Zea_mays_OTS1d ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M53249] TITLE SUMO_protease_domai_figure_2Bs; LINK TAXA = Taxa; DIMENSIONS NCHAR=493; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidopsis_thaliana_ELS1 KWLNDEVINLYMV-LLK---ER--EARE--PK----------------------KFLKCHFFNTFFFTKLV------NSATGY-------NYGAVRRWTSMKRLGYHLKDC--------DKIFIPIHMN-IHW--TL-----AVINI-----------------------------------------------------------------------------------------------------------------K------------------------------------------------DQ------------------------------------K-FQYLDSF-K-G-REP-K--ILDALARYFVDE-VRDKSEVD--------LDVS-RW-----RQEF-VQ--DLPMQRNGFDCGMFMVKYID-FY-SRGL-D-----------LC---FTQEQM-PYFRA--R--TAK--EI----- Arabidopsis_thaliana_ELS2 QWLNDDVTNLYLE-LLK---ER--QTRD--PQ----------------------KYFKCHFFNTFFYVKLV------SGS-GY-------NYKAVSRWTTKRKLGYDLIDC--------DIIFVPIHID-IHW--TL-----GVINN-----------------------------------------------------------------------------------------------------------------R------------------------------------------------ER------------------------------------K-FVYLDSLFT-G-VGH-T--ILNAMAKYLVDE-VKQKSQKN--------IDVS-SW-----GMEY-VE--ERPQQQNGYDCGMFMLKYID-FY-SRGL-S-----------LQ---FSQKDM-PYFRL--R--TAK--EI----- Arabidopsis_thaliana_ESD4 -WLNDEVINVYLE-LLK---ER--ETRE--PK----------------------KYLKCHYFNTFFYKKLV------SDS-GY-------NFKAVRRWTTQRKLGYALIDC--------DMIFVPIHRG-VHW--TL-----AVINN-----------------------------------------------------------------------------------------------------------------R------------------------------------------------ES------------------------------------K-LLYLDSL-N-G-VDP-M--ILNALAKYMGDE-ANEKSGKK--------IDAN-SW-----DMEF-VE--DLPQQKNGYDCGMFMLKYID-FF-SRGL-G-----------LC---FSQEHM-PYFRL--R--TAK--EI----- Arabidopsis_thaliana_FUG1 ---------------VK--------TKQ--------------------------------IFS--------------------------------------KK-----------------YVFLPIVYW-SHW--TL-----LIFCNFGEDLD-----------------------------------------------------------------------------------------------------------S------------------------------------------------DKT-----------------------------------C-MLFLDSL-Q-T-TDS-SQRLEPDIRKFVLDI-YRAEGRTE---------DSS-----LVDEIPFYVP--MVPQQTNDVECGSFVLYYIHRFI--EDA-P-----------EN---FNVEDM-PYF------------------- Arabidopsis_thaliana_OTS1 EYLTSPVMNFYMR-FLQ---QQ--ISSS--NQ----------------------ISADCHFFNTYFYKKL-------SDAVTYKGNDKDAFFVRFRRWW--KGI--DLFRK--------AYIFIPIHED-LHW--SL-----VIVCIPD---------------------------------------------------------------------------------------------------------------K------------------------------------------------KDES------------------------------G--LT-ILHLDSL---G-LHS-RKSIVENVKRFLKDE-WNYLNQDD--YSLDLPISEK-VWKNLPRRISE-AVV-QVPQQKNDFDCGPFVLFFIKRFI--EEA-P-----------QR---LKRKDL-GMFDK--K--WFRPDEASALRI Arabidopsis_thaliana_OTS2 EYLTSPVINFYIR-YVQ---HHVFSADKTAAN--------------------------CHFFNTFFYKKL-------TEAVSYKGNDRDAYFVKFRRWW--KGF--DLF-CK-------SYIFIPIHED-LHW--SL-----VIICIPD---------------------------------------------------------------------------------------------------------------K------------------------------------------------EDES------------------------------G--LT-IIHLDSL---G-LHP-RNLIFNNVKRFLREE-WNYLNQDA---PLDLPISAK-VWRDLPNMINE-AEV-QVPQQKNDFDCGLFLLFFIRRFI--EEA-P-----------QR---LTLQDL-KMIHK--K--WFK--------- Arabidopsis_thaliana_SPF1 -FVNDTIIDFYIN-YLK---NQI-QTEE--KH-------------------------RFHFFNSFFFRKLADL----DKDPSSIADGKA-AFLRVRKWT--RKV--DMFGK--------DYIFVPVNYN-LHW--SL-----IVICHPGEVAN-----------------------------------------------------------------------------------------------------------RTDL-------------------------------------------DLDDSK------------------------------KVP-C-ILHMDSI-K-G-SHA-G--LKNLVQTYLCEE-WKERHKET--------SDDI-SSRFM--NLRF-VSL-ELPQQENSFDCGLFLLHYLELFL--AEA-P-----------LN---FS--------------------------- Arabidopsis_thaliana_SPF2 RFINDTIIDFYIK-YLK---NRI-SPKE--RG-------------------------RFHFFNCFFFRKLANLD---KGTPSTCGGRE--AYQRVQKWT--KNV--DLFEK--------DYIFIPINCS-FHW--SL-----VIICHPGELVP-----------------------------------------------------------------------------------------------------------S----------------------------------------------HVENPQ------------------------------RVP-C-ILHLDSI-K-G-SHKGG--LINIFPSYLREE-WKARHENT--------TNDS-SR---APNMQS-ISL-ELPQQENSFDCGLFLLHYLDLFV--AQA-P-----------AK---FN--------------------------- Chlamydomonas_reinhardtii_SMT7 -WLNDEVINLYML-LLQ---ER--DTRL--RQLGGGGGGGAANGAAGGGGGGGGGYPRCHFFNSFFYNKLF------QDENKY-------NYANVRRWTMPARLRNGMQATPDQSVLLLDRVLLPVHQG-IHW--CC-----AEVDM-----------------------------------------------------------------------------------------------------------------A------------------------------------------------AR------------------------------------A-VRYYDSL-K-G-EDR-Q--CVQHLLQWVADE-SQDKLKTR--------WDTS-KW-----TVEF-PK--NIPTQRNGCDCGVFALMFADR----RGA-G-----------LAHWDFDQPHM----------------E------ Homo_sapiens_SENP1 NWLNDEIINFYMN-MLM---ER---SKE---K----------------------GLPSVHAFNTFFFTKL--------KTAGY---------QAVKRWT--KKV--DVFSV--------DILLVPIHLG-VHW--CL-----AVVDF-----------------------------------------------------------------------------------------------------------------R------------------------------------------------KK------------------------------------N-ITYYDSM-G-G-INN-E--ACRILLQYLKQE-SIDKKRKE--------FDTN-GW-----QLFS-KKSQEIPQQMNGSDCGMFACKYAD-CI-TKDR-P-----------IN---FTQQHM-PYFRK--RMVW----EILHRKL Homo_sapiens_SENP2 -WLNDEVINFYMN-LLV---ER--NKKQ--------------------------GYPALHVFSTFFYPKLK------SG--GY---------QAVKRWT--KGV--NLFEQ--------EIILVPIHRK-VHW--SL-----VVIDL-----------------------------------------------------------------------------------------------------------------R------------------------------------------------KK------------------------------------C-LKYLDSM-G-Q-KGH-R--ICEILLQYLQDE-SKTKRNSD--------LNLL-EW-----THHS-MKPHEIPQQLNGSDCGMFTCKYAD-YI-SRDK-P-----------IT---FTQHQM-PLFRK--KMVW----EILHQQL Homo_sapiens_SENP3 NWLNDQVMNMYGD-LVM---DT--V-----PE-------------------------KVHFFNSFFYDKLR------TK--GY-------D--GVKRWT--KNV--DIFNK--------ELLLIPIHLE-VHW--SL-----ISVDV-----------------------------------------------------------------------------------------------------------------R------------------------------------------------RR------------------------------------T-ITYFDSQ-R-T-LNR-R--CPKHIAKYLQAE-AVKKDRLD--------F-HQ-GW-----KGYF-KM--NVARQNNDSDCGAFVLQYCK-HL-ALSQ-P-----------FS---FTQQDM-PKLRR--Q--IYK--ELCHCKL Homo_sapiens_SENP5 NWLNDQVINMYGE-LIM---DA--V-----PD-------------------------KVHFFNSFFHRQLV------TK--GY---------NGVKRWT--KKV--DLFKK--------SLLLIPIHLE-VHW--SL-----ITVTL-----------------------------------------------------------------------------------------------------------------S------------------------------------------------NR------------------------------------I-ISFYDSQ---G-IHF-KF-CVENIRKYLLTE-AREKNRPE--------F-LQ-GW-----QTAV-TK--CIPQQKNDSDCGVFVLQYCK-CL-ALEQ-P-----------FQ---FSQEDM-PRVRK--R--IYK--ELCECRL Homo_sapiens_SENP6 EFLNDVIIDFYLK-YLV--LEK--LKKED-AD-------------------------RIHIFSSFFYKRLNQRERRNHETTNLSIQQK--RHGRVKTWT--RHV--DIFEK--------DFIFVPLNEA-AHW--FL-----AVVCFPGLEKPKYEPNPHYHENAVIQKCSTVEDSCISSSASEMESCSQNSSAKPVIKKMLNKKHCIAVIDSNPGQEESDPRYKRNICSVKYSVKKINHTASENEEFNKGESTSQKVADRTKSENGLQNESLSSTHHTDGLSKIRLNYSDESPEAGKMLEDELVDFSEDQDNQDDSSDDGFLADDNCSSEIGQWHLKP-TICKQP-C-ILLMDSL-R-G-PSR-SN-VVKILREYLEVE-WEVKKGSK------RSFSKD--------VMKGSNP--KVPQQNNFSDCGVYVLQYVESFF---EN-P-----------I----LS-------F------------------- Homo_sapiens_SENP7 EFLNDVIIDFYLK-YLI--LEK--ASDE-LVE-------------------------RSHIFSSFFYKCLTRKENNLTEDNPNLSMAQR-RHKRVRTWT--RHI--NIFNK--------DYIFVPVNES-SHW--YL-----AVICFPWLEEAVYEDFPQ-----------TV---------------SQQSQAQ---------------------QSQND-----N--------KTI-----DN-DL------------RTTS-------TLS-------LS------------------------AEDSQS----------TESNMS--V------PKKMCKRP-C-ILILDSL-K-A-ASV-QN-TVQNLREYLEVE-WEVKLKTHRQ------FSKT-N------MVDL-CP--KVPKQDNSSDCGVYLLQYVESFF--KD--P-----------I----VN-------F------------------- Oryza_sativa_ELS1 EWLNDEVINLYLE-LLK---ER--ELRE--PN----------------------KFLKCHFFNTFFYKKLI------TG--GY-------DYKSVRRWTTKRKLGYSLLEC--------DKIFVPIHKE-VHW--CL-----AVINI-----------------------------------------------------------------------------------------------------------------R------------------------------------------------DK------------------------------------K-FQFLDSL---GSMDM-K--ALRTLARYLVDE-VKDKSGQH--------IDAL-SW-----KQEG-VK--NLPLQENGWDCGMFMLKYID-FY-SRDM-G-----------LT---FGQKHM-HYFRK--R--TAK--EI----- Oryza_sativa_ELS2 NWLNDEVINLYLE-LLK---ER--AQRE--PK----------------------RFLKCHFFNTFFYKKLA------CGKTGY-------DYQSVRRWTTLNRLGYGLVEC--------EKIFIPIHRN-VHW--CL-----AIINM-----------------------------------------------------------------------------------------------------------------K------------------------------------------------DK------------------------------------T-FQYLDSF-G-G-MDH-A--VLRILARYIRDE-LNDKSNIQ--------VDTS-SW------LKI-SSD-SCPLQQNGWDCGMFMLKFID-FH-SRGI-G-----------LC---FTQEHM-DYFRK--R--TAK--EI----- Oryza_sativa_FUG1 -WLNDEVINLYLE-LLK---ER--EARE--PK----------------------RFLKCHFFNTFFYKKLA------CGKNGY-------DYKSVKRWTTRRRLGYELIEC--------DKIFVPVHKD-VHW--CL-----AVINM-----------------------------------------------------------------------------------------------------------------K------------------------------------------------ER------------------------------------T-FQYLDSL---GCVDH-H--VPRVLARYIAEE-VKDKSNKE--------IDTN-TW-----HEEL-VD--DIPLQQNGWDCGMFMLKYID-FH-SRGL-S-----------MS---FSQENM-EYFRK--R--TVM--EI----- Oryza_sativa_OTS3 EYLKSPVINFYMQ-YLR--KSR--TCGD------------------------------LYIFNTYFYSKL-------EEVLSRMGDHDDSQFSKLRRWW--KHI--DIFRQ--------PYIILPIH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--D------------FLIAE-WQHLQNDS---SYTIPFSGR-IWNHLSKNINK-EKV-QVPSQRNKYDCGIFMLHYIERFI--QEA-P-----------ER---LTRENL-CMFGR--K--WFDPKETSGLR- Oryza_sativa_SPF1 -FVNDTIIDFYVK-HLS---TRI-EPAE--KH-------------------------RYHFFNSFFFRKLADL----DKDQGRAPEGRA-AFLRVRKWT--RKI--NIFTK--------EFLFIPVNFN-LHW--SL-----IVICYPGEVETF----------------------------------------------------------------------------------------------------------K------------------------------------------------DGDT--------------------------NISAKIP-C-ILHMDSL-K-G-SHS-G--LKDIIQSYLWEE-WKERHPES-------ASDCSDKFL----NLRF-ISL-ELPQQDNSFDCGLFLLHYVELFL--MDT-P-----------RS---FNPLKI-DSFA---N--YLS--DD----- Saccharomyces_cerevisiae_ULP1 RWLNDTIIEFFMK-YI----EK--ST----PN--------------------------TVAFNSFFYTNL-------SER-GY---------QGVRRWMKRKK---TQIDK-------LDKIFTPINLNQSHW--AL-----GIIDL-----------------------------------------------------------------------------------------------------------------K------------------------------------------------KK------------------------------------T-IGYVDSLSN-G-PNAMSFAILTDLQKYVMEE-SKHTIGED--------FDLI--------HL-------DCPQQPNGYDCGIYVC--MNTLYGSADA-P-----------LD---FDYKDA-IRMRR------FIAHLILT--- Saccharomyces_cerevisiae_ULP2 DWVNDSILDFFTKFYIESSIEKSIIKRE-----------------------------QVHLMSSFFYTKLI------SNPADY--------YSNVKKWV--NNT--DLFSK--------KYVVIPINIS-YHWFSCIITNLDAILDFHQN--------------------------------------------------------------------------------------------------------------K------------------------------------------------DKNDAINS---------------------DEISINNPLVNILTFDSL-R-Q-THS-R--EIDPIKEFLISY-ALDKYSIQ--------LDKT-QI-----KMKT-CP---VPQQPNMSDCGVHVILNIRKFF---EN-PVETIDVWKNSKIKSKHFTAKMINKYFDKNER--NSA--R------ Zea_mays_ESD4a EWLNDEAINLYLD-LLK---ER--ELRE--PC----------------------RFLKCHFFNTFFYKKLI------SS--GY-------DYKAVRRWTTKRKLGYSLIDC--------DKIFVPIHKE-VHW--CL-----AVINI-----------------------------------------------------------------------------------------------------------------R------------------------------------------------DK------------------------------------K-FQYLDSL-G-G-MDM-K--VLNVLAKYIVDE-VKDKSGQQ--------MDVL-SW-----KQEG-VK--NLPLQENGWDCGMFMLKYID-FY-SRDM-D-----------LI---FGQKQM-HYFRR--R--TAK--EI----- Zea_mays_ESD4b EWLNDEVINLYLD-LLK---ER--ELRE--PR----------------------KFLKCHFFNTFFYKKLI------SS--GY-------DYKAVRRWTTKRRLGYSLIDC--------DKIFVPIHKE-VHW--CL-----AVINI-----------------------------------------------------------------------------------------------------------------R------------------------------------------------DK------------------------------------K-FQYLDSL-G-G-MDT-R--VLRILAKYIVDE-VKDKSDQQ--------IDAL-SW-----KQES-VE--NLPLQENGWDCGMFMLKYID-FY-SRDM-D-----------LI---FGQKQM-HYFRR--R--TAK--EI----- Zea_mays_ESD4c -WLNDEVINLYLE-LLK---ER--EKRE--PN----------------------RFLKCHFFNTFFYKKLA------CGKNGY-------DYKSVKRWTSQRKLGYELIEC--------DKIFVPVHKD-VHW--CL-----AIINV-----------------------------------------------------------------------------------------------------------------K------------------------------------------------EN------------------------------------F-FQYLDSL-G-G-MDH-N--VPKVLARYISEE-VKDKSNRV--------INTS-LW-----HEEL-V---DIPLQRNGWDCGMFMLKYID-FH-SRGL-P-----------LS---FSQEHM-EYFRK--R--TAK--EI----- Zea_mays_ESD4d -WLNDEVINLYIE-LLK---ER--EKRE--PN----------------------RFLKCHFFNTFFYKRLT------CGIAGY-------DYQSVRRWTTFKRLGYGLVEC--------EKIFVPVHRN-AHW--CL-----ALINM-----------------------------------------------------------------------------------------------------------------K------------------------------------------------DK------------------------------------T-LQYLESLVGWG-RD-----VLDILARYIVDE-LKDKSNIE--------VEPS-SW-----TV---VSE-SLPLQQNGWDCGMFMLKYID-FH-SRGIKP------------S---FSQEHM-MYFRK--R--IAK--EI----- Zea_mays_OTS1a -FLSSQVINFYIK-YIK--MTR--LCDENFRD-------------------------KFYIFNTYFYGKL-------EEALRR-PR----DFPKLRRWS--KGV--NIFNN--------AYIILPIHGK-EHW--SL-----VIICLPP---------------------------------------------------------------------------------------------------------------K------------------------------------------------ERTS------------------------------SEPII-ILHLDSL---G-MHP-STKILNTVGRYLEKE-WRFLS-----------V----AWPCLLNDIRK-EAV-QVPQQNNAYDCGIFMLYYIEQFI--KKA-P-----------AR---FTTDKL-GMFNR--S--WFK--------- Zea_mays_OTS1b -YLSSPVINFYIQ-YIK--RNR--LSSEDFRD-------------------------KFYIFNTYFYGKL-------EEALCR-QD----EFSKLRRWW--KGV--NILNK--------AYIILPIHGM-AHW--SL-----VIICIPA---------------------------------------------------------------------------------------------------------------K------------------------------------------------ESIS------------------------------G-P-I-ILHLDSL---A-MHP-STKILNTVERYLEKE-WCQLS----------------SWEDFKNNIHK-QSV-EVPRQNNEYDCGIFMLYYIERFI--KEA-P-----------ER---FTIDKL-DMFNR--S--WFK--------- Zea_mays_OTS1c EYLKSPVINFYLQ-YLK-------KAR---PR----------------------R--DLHMFNTYFYSKL-------EEALSM-PGHHDSEFSKLRRWW--RGV--DIFKK--------AYIILPINES-MHW--SL-----IIVCMPT---------------------------------------------------------------------------------------------------------------K------------------------------------------------EADS------------------------------G-P-I-ILHLDSL---G-LHS-SQKLFDIVARYIQAERWHLGMDSS----YDIPFSGR-IWRRLSKNINR-EKI-EVPRQRNEYDCGLFMLYYIDRFI--QDA-P-----------ER---LTKEGL-GMFGR--R--WF---------- Zea_mays_OTS1d --LSSPIMNFYIM-YLQGPMSS--IIRS--RG-------------------------EYHIFNTYFFSKLEAIATK-KDKITY--------FLKLRRWW--KGV--DIFQM--------AYILMPVHAE-THW--SL-----IIICMPT---------------------------------------------------------------------------------------------------------------K------------------------------------------------EDQI------------------------------G-P-I-ILHLDSL---K-FHS-SRWIFNVVSRFLKEE-WNYLNENI--SSKECPLRET-VWKNLPRKVEKKIV--EVPQQQNDYDCGLFVLYYMQRFI--QEA-P-----------ER---FRKKDY-SMFGK--R--WF---------- ; END;