#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 13:21 GMT TreeBASE (cc) 1994-2008 Study reference: Halanych K., Demboski J., Van vuuren B., Klein D., & Cook J. 1999. Cytochrome b phylogeny of North American hares and jackrabbits (Lepus, Lagomorpha) and the effects of saturation in outgroup taxa. Molecular Phylogenetics and Evolution, 11: 213-221. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S562] BEGIN TAXA; TITLE TaxonLabelSet10228; DIMENSIONS NTAX=19; TAXLABELS Lepus_alleni_alleni Lepus_alleni_tiburonensis Lepus_americanus_AK Lepus_americanus_ME Lepus_arcticus Lepus_californicus_NM Lepus_californicus_TX Lepus_callotis_1 Lepus_callotis_2 Lepus_capensis Lepus_europaeus_Sib. Lepus_europaeus_Ven. Lepus_othus Lepus_saxatilis Lepus_timidus_Russia Lepus_timidus_UK Lepus_townesendii Oryctolagus Sylvilagus ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2169] TITLE cytochrome_b; LINK TAXA = TaxonLabelSet10228; DIMENSIONS NCHAR=702; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Lepus_alleni_alleni ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTTGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATTCTGACTGGTCTCTTCCTAGCTATACACTATACATCAGACACAGCGACAGCATTTTCCTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATCCGTTACCTGCACGCTAACGGAGCATCAATATTCTTTATTTGCCTATATATACATGTAGGCCGTGGAATTTACTACGGCTCATATACTTATTTAGAAACCTGAAATATTGGGATCATTCTGCTATTCGCAGTAATAGCCACAGCATTCATAGGTTATGTCCTCCCATGAGGGCAAATATCATTCTGAGGAGCTACCGTAATTACTAATCTTCTATCAGCCATTCCCTATATTGGAACAACCCTAGTTGAATGAATCTGAGGAGGATTTTCAGTTGACAAAGCCACACTCACCCGATTCTTCGCTTTCCACTTTATTCTCCCATTCATCATTGCAGCATTAGTAATAATTCACTTACTCTTCCTCCATGAAACGGGCTCCAATAACCCTTCAGGCATTCCATCAGATTCCGATAAAATTCCATTCCACCCCTATTATACAATTAAAGATGTCCTAGGATTTCTTATA Lepus_alleni_tiburonensis ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTTGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATTCTGACTGGTCTCTTCCTAGCTATACACTATACATCAGACACAGCGACAGCATTTTCCTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATCCGTTACCTGCACGCTAACGGAGCATCAATATTCTTTATTTGCCTATATATACATGTAGGCCGTGGAATCTACTACGGCTCATATACTTATTTAGAAACCTGAAATATTGGGATCATTCTGCTATTCGCAGTAATAGCCACAGCATTTATAGGTTATGTCCTCCCATGAGGGCAAATATCATTCTGAGGAGCTACCGTAATTACTAATCTTCTATCAGCCATTCACTATATTGGAACAACCCTAGTTGAATGAATCTGAGGGGGATTTTCAGTTGACAAAGCCACACTCACCCGATTCTTCGCTTTCCACTTTATTCTCCCATTCATCATTGCAGCATTAGTAATAATTCACTTACTCTTCCTCCATGAATCGGGCTCCAATAACCCTTCAGGCATTCCATCAGATTCCGATAAAATTCCATTCCACCCCTATTATACAATTAAAGATGTCCTAGGGTTTCTTATA Lepus_americanus_AK ATGACCAACATTCGTAAAACGCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGAAACTTTGGCTCTCTACTAGGCCTATGCCTAATGATCCAAATCTTAACTGGCCTGTTCCTTGCTATACACTATACATCGGACACAGCAACAGCATTCTCCTCAGTCACTCATATCTGCCGAGACGTAAACTACGGCTGACTTATCCGTTACCTACACGCTAACGGAGCATCAATGTTCTTTATTTGTCTATACATACACGTAGGCCGTGGAATTTATTATGGATCATATACTTATCTGGAAACCTGAAATATTGGTATCGTTCTCCTATTTGCAGTAATAGCCACGGCATTCATAGGCTACGTCCTCCCATGAGGACAAATATCATTCTGAGGGGCTACCGTAATTACTAACTTCCTATCAGCCATCCCCTACATTGGGACAACCCTAGTTGAATGAATCTGAGGTGGATTTTCAGTTGATAAAGCCACTCTCACCCGATTCTTCGCTTTCCACTTCATCCTCCCATTCATCATTGCAGCGCTAGTCATAATTCACTTACTTTTCCTTCATGAAACCGGCTCCAATAACCCATCAGGCATCCCATCAGACTCCGACAAAATCCCATTCCACCCCTATTATACAATTAAAGACGTCCTAGGATTTCTCATA Lepus_americanus_ME ATGACCAACATTCGTAAAACT???CCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGAAACTTTGGCTCTCTACTAGGCCTATGCCTAATGATCCAAATCTTAACTGGCCTGTTCCTTGCTATACACTATACATCGGACACAGCAACAGCATTCTCCTCAGTCACTCATATCTGCCGAGACGTAAACTACGGCTGACTTATCCGTTATCTACACGCTAACGGAGCATCAATGTTCTTTATTTGTCTATACATACACGTAGGCCGTGGAATTTATTATGGATCATATACTTATCTGGAAACCTGAAATATTGGTATCGTTCTCCTATTTGCAGTAATAGCCACGGCATTCATAGGCTACGTCCTCCCATGAGGACAAATATCATTCTGAGGGGCTACCGTAATTACTAACCTCCTATCAGCTATCCCCTACATTGGGACAACCCTAGTTGAATGAATCTGAGGTGGATTTTCAGTTGATAAAGCCACTCTCACCCGATTCTTCGCTTTCCACTTCATCCTCCCATTCATCATTGCAGCGCTAGTAATAATTCACTTACTTTTCCTTCATGAAACCGGCTCCAATAACCCATCAGGCATCCCATCAGACTCCGACAAAATCCCATTCCACCCCTATTATACAATCAAAGACGTCCTAGGATTTCTCATA Lepus_arcticus ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGAAACTTTGGCTCCCTATTAGGACTATGCCTAATAATCCAAATCCTAACTGGCCTATTCCTAGCTATACACTACACATCAGACACAGCAACAGCATTTTCTTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATTCGTTACCTGCACGCCAATGGAGCATCAATATTTTTTATCTGCTTATATATACATGTAGGTCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGGAATATTGGCATTATTCTACTATTTGCAGTAATAGCCACAGCATTTATAGGCTATGTTCTCCCATGAGGACAAATATCATTCTGAGGCGCTACTGTAATTACCAATCTTTTATCAGCTATCCCCTACATTGGAACAACCCTAGTTGAATGAATTTGAGGAGGATTTTCAGTCGACAAAGCTACACTCACCCGATTCTTCGCTTTCCACTTCATTCTCCCATTCATCATCGCAGCACTAGTGATGATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGTATCCCATCAGACTCTGATAAGATTCCATTCCACCCCTATTACACAATTAAAGACCTTCTAGGATTTCTCGTA Lepus_californicus_NM ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTCCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTTGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATTCTAACTGGTCTCTTCCTAGCTATACACTATACATCAGACACAGCGACAGCATTCTCCTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATCCGTTACCTGCACGCTAACGGAGCATCAATATTCTTTATTTGCCTATATATACATGTAGGCCGTGGAATTTACTACGGCTCATATACTTATTTAGAAACCTGAAATATCGGGATTATTCTGCTATTCGCAGTAATAGCCACAGCATTTATAGGTTATGTCCTCCCATGAGGACAAATATCATTCTGAGGAGCTACCGTAATTACTAATCTCCTGTCAGCTATCCCCTATATTGGGACAACCCTAGTTGAATGAATCTGAGGGGGATTTTCAGTTGACAAAGCCACACTAACCCGATTCTTCGCTTTCCACTTCATCCTCCCATTCATCATTGCAGCATTAGTAATAATTCACTTACTCTTCCTCCATGAAACGGGCTCCAATAACCCTTCAGGCATTCCATCAGATTCCGATAAAATTCCATTCCACCCCTATTATACAATTAAAGATGTCCTAGGATTTCTTATA Lepus_californicus_TX ATGACCAACATTCGTAAAACTC???CCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTCGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATCCTAACTGGTCTCTTCCTAGCTATACACTATACATCAGACACAGCGACAGCATTCTCCTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATCCGTTACCTGCACGCTAACGGAGCATCAATATTCTTTATTTGCCTATATATACATGTAGGCCGTGGAATTTACTACGGCTCATATACTTATTTAGAAACCTGAAATATCGGGATTATTCTGCTATTCGCAGTAATAGCCACAGCATTTATAGGTTATGTCCTCCCATGAGGACAAATATCATTCTGAGGAGCTACCGTAATTACTAATCTTCTATCAGCTATCCCCTACATTGGAACAACCCTAGTTGAATGAATCTGAGGAGGATTTTCAGTTGACAAATCCACACTAACCCGATTCTTCGCTTTCCACTTTATTCTCCCATTCATCATTGCAGCATTAGTAATAATTCACTTACTCTTCCTCCATGAAACGGGCTCCAATAACCCTTCAGGCATTCCATCAGATTCCGATAAAATTCCATTCCACCCCTATTATACAATTAAAGAGGCCCTAGGATTTCTTATA Lepus_callotis_1 ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTTGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATTCTGACTGGTCTCTTCCTAGCTATACACTATACATCAGACACAGCGACAGCATTCTCCTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTCATCCGTTACCTGCACGCTAACGGAGCGTCAATATTCTTTATTTGCCTATATATACATGTAGGCCGTGGAATTTACTACGGCTCATACACTTACTTAGAAACCTGAAATATTGGTATTATTCTACTATTCGCAGTAATAGCCACAGCATTTATAGGTTATGTCCTCCCATGAGGACAAATATCATTCTGAGGAGCTACCGTAATTACTAATCTCCTATCAGCCATCCCCTACATTGGAACAACCCTAGTTGAATGAATCTGAGGGGGATTTTCAGTTGACAAAGCCACACTCACCCGATTCTTCGCTTTCCACTTCATCCTCCCATTTATCATTGCAGCATTAGTCATAATTCACTTACTCTTTCTCCACGAAACGGGCTCCAACAACCCATCAGGCATTCCATCAGATTCTGATAAAATCCCATTCCACCCCTATTATACAATTAAAGATGTCCTAGGGTTTCTTATA Lepus_callotis_2 ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTTGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATTCTGACTGGTCTCTTCCTAGCTATACACTATACATCAGACACAGCGACAGCATTCTCCTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTCATCCGTTACCTGCACGCTAACGGAGCGTCAATATTCTTTATTTGCCTATATATACATGTAGGCCGTGGAATTTACTACGGCTCATACACTTACTTAGAAACCTGAAATATTGGTATTATTCTACTATTCGCAGTAATAGCCACAGCATTTATAGGTTATGTCCTCCCATGAGGACAAATATCATTCTGAGGAGCTACCGTAATTACTAATCTCCTATCAGCCATCCCCTACATTGGAACAACCCTAGTTGAATGAATCTGAGGGGGATTTTCAGTTGACAAAGCCACACTCACCCGATTCTTCGCTTTCCACTTCATCCTCCCATTTATCATTGCAGCATTAGTCATAATTCACTTACTCTTTCTCCACGAAACGGGCTCCAACAACCCATCAGGCATTCCATCAGATTCTGATAAAATCCCATTCCACCCCTATTATACAATTAAAGATGTCCTAGGGTTTCTTATA Lepus_capensis ATGACCAACATTCGTAAAACT??CCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGAAACTTCGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATCCTAACTGGCCTGTTCCTAGCTATACACTACACATCAGACACAGCAACAGCGTTTTCCTCAGTCACACATATTTGTCGAGACGTAAACTACGGTTGACTTATCCGTTACCTACACGCCAACGGAGCATCAATATTCTTTATTTGCTTATATATACATGTAGGCCGTGGAATCTACTACGGCTCATACACTTATCTAGAAACCTGAAACATTGGCATTATTCTGTTATTCGCAGTAATAGCAACAGCGTTCATAGGCTATGTCCTCCCATGAGGGCAAATATCATTCTGAGGTGCCACCGTAATTACTAATCTTCTATCAGCCATTCCTTACATCGGAACAACCCTAGTTGAATGAATCTGAGGAGGATTTTCAGTCGACAAAGCCACACTAACCCGATTCTTCGCTTTCCATTTCATCCTACCATTTATCATCGCAGCTCTAGTAATAATCCATTTACTTTTCCTCCATGAAACCGGTTCTAATAATCCATCAGGAATCCCATCAGACTCTGATAAAATCCCATTTGACCCCTATTATACAATTAAAGATGTCCTAGGATTTCTT??? Lepus_europaeus_Sib. ATGACCAACATTCGTAAAACGCACCCCCTACTAAAAATTGTTAACCACTCTCTAATCGACCTTCCCGCCCCCTCAAACATCTCTGCCTGATGAAACTTCGGCTCTCTATTAGGATTATGCCTAATAATCCAGATCCTAACTGGCTTATTTCTAGCCATACACTACACATCAGACACAGCTACAGCATTCTCCTCAGTTACACATATTTGCCGAGATGTAAACTACGGCTGACTCATTCGTTACTTACACGCTAATGGAGCATCAATATTCTTTATTTGCTTATATATACATGTAGGCCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGAAACATTGGCATTATTCTACTATTCGCAGTAATGGCTACAGCATTCATAGGCTACGTCCTCCCATGAGGACAAATATCATTCTGAGGGGCTACCGTAATTACTAATCTTCTATCAGCCATTCCTTATATCGGAACAACTCTAGTTGAATGAATCTGAGGAGGATTTTCAGTCGATAAAGCCACACTTACCCGATTTTTCGCTTTTCACTTTATCCTCCCATTTATTATTGCAGCTCTAGTGATAATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGCATCCCATCAGACTCTGATAAAATCCCATTCCACCCCTACTACACAATTAAAGACGCGCTAGGATTTCTTATA Lepus_europaeus_Ven. ATGACCAACATTCGTAAAACGCACCCCCTACTAAAAATTGTTAACCACTCTCTAATCGACCTTCCCACCCCCTCAAACATCTCTGCCTGATGAAACTTCGGCTCTCTATTGGGATTATGCCTAATAATCCAGATCCTAACTGGCTTATTTCTAGCCATACACTACACATCAGACACAGCTACAGCATTCTCCTCAGTTACACATATTTGCCGAGATGTAAACTACGGCTGACTCATTCGTTACTTACACGCTAATGGAGCATCAATATTCTTTATTTGCTTATATATACATGTAGGCCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGAAACATTGGCATTATTCTACTATTCGCAGTAATGGCTACAGCATTCATAGGCTACGTCCTCCCATGAGGACAAATATCATTCTGAGGGGCTACCGTAATTACTAATCTTCTATCAGCCATTCCTTATATCGGAACAACCCTAGTTGAATGAATCTGAGGAGGATTTTCAGTCGATAAAGCCACACTTACCCGATTTTTCGCTTTTCACTTTATCCTCCCATTTATTATTGCAGCTCTAGTGATAATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGCATCCCATCAAACTCTGATAAAATTCCATTCCACCCCTACTACACAATTAAAGACGCGCTAGGATTTCTTATA Lepus_othus ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGGAACTTTGGCTCCCTATTAGGACTATGCCTAATAATCCAAATCCTAACTGGCCTATTCCTAGCTATACACTACACATCAGACACAGCAACAGCATTTTCTTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATTCGTTACCTGCACGCCAATGGAGCATCAATATTTTTTATCTGCTTATATATACATGTAGGTCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGGAATATTGGCATTATTCTACTATTTGCAGTAATAGCCACAGCATTTATAGGCTATGTTCTCCCATGAGGACAAATATCATTCTGAGGCGCTACTGTAATTACCAATCTTTTATCAGCTATCCCCTACATTGGAACAACCCTAGTTGAATGAATTTGAGGAGGATTTTCAGTCGACAAAGCTACACTCACCCGATTCTTCGCTTTCCACTTCATTCTCCCATTCATCATCGCAGCACTAGTGATGATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGTATCCCATCAGACTCTGATAAGATTCCATTCCACCCCTATTACACAATTAAAGACCTTCTAGGATTTCTCGTA Lepus_saxatilis ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCTTCAAACATCTCAACCTGATGAAACTTTGGATCTCTGTTAGGCCTATGCCTAATAATTCAAATCCTAACTGGCCTATTCCTAGCCATACACTACACATCAGACACAGCAACAGCATTCTCCTCAGTTACACACATTTGTCGAGACGTAAATTACGGCTGACTCATCCGTTATCTACACGCTAACGGAGCATCAATATTCTTTATTTGCTTATATATACATGTAGGCCGTGGAATCTACTACGGCTCATACACTTATCTCGAAACCTGAAATATTGGCATTATCCTATTATTTGCAGTAATAGCCACAGCATTCATAGGCTATGTCCTCCCATGAGGGCAAATATCTTTCTGAGGGGCCACCGTAATTACTAATCTTCTATCAGCCATTCCCTACATTGGAACAACCCTAGTTGAATGAATCTGAGGGGGATTTTCAGTTGACAAAGCCACACTCACCCGATTTTTCGCTTTCCACTTCATCCTCCCATTCATCATCGCAGCACTAGTAATAATCCATTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGCATTCCATCAGACTCCGACAAAATTCCATTCCACCCTTATTATACAATCAAAGATATTCTAGGGTTTCTAGTT Lepus_timidus_Russia ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGAAACTTTGGCTCCCTATTAGGACTATGCCTAATAATCCAAATCCTGACTGGCCTATTCCTAGCTATACACTACACATCAGACACAGCAACAGCATTTTCTTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATTCGTTACCTGCACGCCAATGGAGCATCAATATTTTTTATCTGCTTATATATACATGTAGGTCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGGAATATTGGCATTATTCTACTATTTGCAGTAATAGCCACAGCATTTATAGGCTATGTTCTCCCATGAGGACAAATATCATTCTGAGGCGCTACTGTAATTACCAATCTTTTATCAGCTATCCCCTACATTGGAACAACCCTAGTTGAATGAATTTGAGGAGGATTTTCAGTCGACAAAGCTACACTCACCCGATTCTTCGCTTTCCACTTCATTCTCCCATTCATCATCGCAGCACTAGTGATGATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGTATCCCATCAGACTCTGATAAGATTCCATTCCACCCCTATTACACAATTAAAGACCTTCTAGGATTTCTCGTA Lepus_timidus_UK ?????????????????????????CCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGGAACTTTGGCTCCCTATTAGGACTATGCCTAATAATCCAAATCCTAACTGGCCTATTCCTAGCTATACACTACACATCAGACACAGCAACAGCATTTTCTTCAGTCACACACATTTGCCGAGACGTAAACTACGGCTGACTCATTCGTTACCTACACGCTAACGGAGCATCAATATTTTTTATCTGCTTATATATACATGTAGGTCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGGAATATTGGCATTATTCTACTATTTGCAGTAATAGCCACAGCATTCATAGGCTATGTCCTCCCATGAGGACAAATATCATTCTGAGGCGCTACCGTAATTACTAATCTTTTATCAGCTATTCCCTACATTGGAACAACCCTAGTTGAATGAATTTGAGGAGGATTTTCAGTCGACAAAGCTACACTCACCCGATTCTTCGCTTTCCACTTCATTCTCCCATTCATCATCGCAGCACTAGTGATGATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGTATCCCATCAGACTCTGATAAGATTCCATTCCACCCCTATTACACAATTAAAGACCTTCTAGGATTTCTCGTA Lepus_townesendii ATGACCAACATTCGTAAAACTCCACCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTTGGCTCCCTATTAGGACTATGCCTAATAATCCAAATCCTAACTGGCCTCTTCCTAGCTATACACTATACATCAGACACAGCAACAGCATTTTCTTCAGTCACACACATTTGCCGAGACGTAAACTATGGCTGACTCATTCGTTACCTACACGCTAACGGAGCATCAATATTTTTTATCTGCTTATATATACATGTAGGTCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGAAATATTGGCATTATTCTACTATTTGCAGTAATAGCCACAGCATTCATAGGCTATGTCCTCCCATGAGGACAAATATCATTCTGAGGCGCTACCGTAATTACTAATCTTTTATCAGCTATTCCCTACATTGGAACAACCCTAGTTGAATGAATTTGGGGAGGGTTCTCAGTCGACAAAGCTACACTCACCCGATTCTTCGCCTTCCACTTCATTCTCCCATTCATCATCGCAGCACTAGTGATGATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAATCCATCAGGTATCCCATCAGACTCTGATAAAATTCCATTCGACCCCTATTATACAATTAAAGACCTCCTAGGATTTCTCGTA Oryctolagus ATGACCAACATTCGCAAAACCCACCCCCTATTAAAAATTGTTAACCACTCCCTAATTGACCTTCCTGCTCCATCAAACATCTCTGCCTGATGAAACTTTGGCTCTCTACTAGGCCTGTGCCTTATAATTCAAATTTTCACTGGCCTATTCTTAGCCATACACTACACCTCTGACACAACAACAGCATTCTCATCAGTAACCCATATTTGCCGAGATGTTAACTATGGCTGACTTATCCGATACCTCCACGCTAACGGAGCATCTATATTCTTTATTTGCCTCTACATACACGTAGGCCGCGGAATCTACTATGGATCATACACATACCTAGAGACCTGAAACATTGGCATCATCCTCCTATTCGCAGTAATAGCCACAGCATTTATCGGTTATGTCCTCCCATGAGGACAAATATCATTATGGGGAGCAACCGTAATCACTAACCTCCTATCAGCAATCCCATATATCGGAACAACCTTAGTTGAATGAATCTGAGGAGGATTTTCAGTTGATAAAGCCACTCTTACCCGATTCTTCGCTTTTCACTTCATCTTGCCATTTATCATTGCAACTTTAGTCTTAATTCACCTCCTCTTTCTACATGAAACTGGCTCCAACAACCCAACAGGAATTCCTTCAAACTCAGATAAAATCCCTTTCCACCCCTACTACACAATCAAAGACACCCTAGGTTTCCTACTC Sylvilagus ATGACCAACATTCGTAAAACCCACCCTCTACTAAAAATCATCAACCACTCCTTAATTGACCTTCCCACCCCATCAAACATCTCTGCCTGATGAAACTTCGGGTCCCTCCTAGGCCTATGCCTAATCATTCAAATCCTAACCGGCCTATTCTTAGCCATGCACTACACCTCCGACACACTTACAGCCTTCTCGTCAGTAACTCATATTTGTCGAGACGTAAACTACGGCTGACTAATCCGATATCTTCATGCTAACGGAGCATCAATATTCTTCATCTGCCTTTACATACACGTCGGCCGCGGTATTTACTACGGCTCCTACACTTACCTAGAAACCTGAAATATTGGCATTATCCTGCTATTCGCAGTAATAGCCACAGCTTTCATAGGCTATGTACTCCCATGAGGCCAAATATCCTTCTGAGGCGCAACCGTAATCACTAATCTTTTATCAGCCATCCCCTATATTGGAACAGCCCTAGTCGAATGGATCTGAGGGGGGTTCTCAGTCGACAAAGCCACACTCACCCGCTTCTTCGCATTCCACTTTATCCTACCATTTATCATCGCAGCTCTAGTTATAGTCCACTTACTGTTCCTCCACGAAACTGGCTCTAACAACCCAACAGGCATCCCTTCAGACTCAGACAAAATCCCTTTCCACCCTTACTACACAATTAAAGACGCCCTGGGATTTATCCCC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = cytochrome_b) = 1: 1-700\3, 2: 2-701\3, 3: 3-702\3; CODONPOSSET CodonPositions (CHARACTERS = cytochrome_b) = 1: 1-700\3, 2: 2-701\3, 3: 3-702\3; END;