#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 2:16 GMT TreeBASE (cc) 1994-2008 Study reference: Stanhope M., Waddell V., Madsen O., De jong W., Hedges S., Cleven G., Kao D., & Springer M. 1998. Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals. Proceedings of the National Academy of Sciences of the United States of America, 95: 9967-9972. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S599] BEGIN TAXA; TITLE combined; DIMENSIONS NTAX=18; TAXLABELS Amblysomus_hottentotus Bos_taurus Cavia_porcellus Dugong_dugong Echinops_telfairi Elephantulus_rufescens Elephas_maximus Equus_asinus Equus_caballus Erinaceus_europaeus Homo_sapiens Loxodonta_africana Orycteropus_afer Oryctolagus_cuniculus Procavia_capensis Rattus_norvegicus Scalopus_aquaticus Trichechus_manatus ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2243] TITLE A2AB_18_taxa; LINK TAXA = combined; DIMENSIONS NCHAR=1134; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Amblysomus_hottentotus GCCATTGCGGCAGTCATCACCTTCCTCATCCTCTTCACCATCTTTGGCAACGCTCTGGTCATTTTGGCTGTGCTGACCAGTCGCTCTTTGCGCGCCCCGCAGAACCTGTTTCTAGTATCGCTGG?CGCTGCTGATATTCTAGTGGCCACGCTCATCATCCCTTTCTCACTGGCCAACGAGCTGCTGGGCTACTGGTATTTCCGGCATATGTGGTGCGAGGTGTACCTGGCGCTGGACGTGCTTTTCTGTACCTCGTCCATCGTGCACCTGTGCGCCATCAGCCTGGACCGCTACTGGGCAG?GAGCCGCGCGCTAGAGTACAACTCCAAGCGCACCCCACGCCGCATCAAGTGCATCATACC?ACTGTGTGGCTCATCGCAGCCGCCATCTCGCTGCCACCTCTCATTTACAAGGGCGACCAGGGTCCCCAGCCCCACGGGCGCCCCCAGTGCAAGCTCAACCAAGAGGCCTGGTACATCCTGTCTTCCAGCATTGGCTCCTTCTTTGCACCCTGCCTCATCATGATCCTCGTTTACCTGCGCATCTACCTGATTGCCAAACGCAGCAACCGCCGA---GGGCCCAGGGCCAAGGGGGCCACCAGGGAGGGTGAGTCCAAGCTGCCCCATCCCATGGCTGCAGGGGCTTCAGCCTCAGCCAAGCCACCAACCCTGACCTCTTCTTTGGCTGTTGCTGGAGAGGCCAATGGACACTCTAAGCCC---ACTGGAGAGGGGGAAACTCTC?AAGATCCTGTGACCTCGACATTGCCACCTAGCTGGCCTGCCCTTCCCAACTCAGACCAGGGTCAGAAGGAGGGTGTCTGTGAAACATCTCCAGGACCCCAGGCTGTGCCAGTCTCCCCTGCCTCTGCTGGCAGCCCACCCCTGCAGCAGCCACAGGGTTCTCGGGTGCTGGCTACCTTACGTGGCCAGGTGCTCCTGGGCAGGGGTGTGGGTGCTGCAGGAGGGCAGTGGTGGCGCCGGAGGACACAGCTGACCCGGGAGAAGCGGTTCACTTTCGTGCTGGCTGTGGTCATTGGTGTCTTTGTGCTCTGCTGGTTCCCCTTTTTCTTTAGCTACAGCCTGGGGGCCATCTGCCCACAGCACTGCAAGGTGCCCCATGGCCTCTTC Bos_taurus GCCATCGCGGCGGTCATCACCTTCCTCATCCTCTTCACCATCTTCGGCAACGCGCTGGTCATCTTGGCTGTGCTGACCAGCCGCTCGCTGCGCGCCCCGCAGAACCTGTTCCTAGTGTCGCTGGCCGCCGCCGACATCCTGGTAGCCACGCTCATCATCCCTTTCTCGCTGGCCAACGAGTTGCTGGGCTACTGGTACTTCTGGCGCACCTGGTGCGAGGTGTACCTGGCGCTCGACGTGCTCTTCTGCACTTCCTCCATCGTGCACCTGTGTGCCATCAGCCTGGACCGCTA??GGGCAGTGAGCCGGGCCCTGGAGTACAACTCCAAGCGCACCCCGCGCCGCATCAAGTTCATCATCCTCATCGTATGGCTCATCGCAGCGGTTATCTCGCTGCCGCCCCTCATCTACAAGGGCGACCAGGGTCCCCAGCCCCTGGCCCGCCCTCAGTGCAAGCTCAACCAAGAGGCCTGGTATATTCTTGCCTCCAGCATTGGATCTTTCTTTGCACCCTGCCTTATCATGATCCTGGTCTACCTGCGCATCTACCTGATTGCCAAGCGCAGCCACTGCAGA---GGCCCCAGGGC?AAAGGGGGGCCTGGGGAGAGGGAGTCTAAGCAGCCACACCCTGTCCCTGGGGAAGTTTCAGACTCAGCCAAACTGCCAACCTTGGCCTCTCAACTGGCTACTCCTGGAGAGGCCAACGGATGCTCCCAACCTCGCCCAGGGGAGGGGGAGACCCCTGAAGCCCCTGGCACTCCTGCCTTGCCACCCAGCTGGCCTGCCATCCCCAAGTCAGGCCAGGGTCAGAAGGAAGGGGTCTGTGGTTCATCTCCGGAGCCGCAGGCCTTGCCGGCGTCTC?TGCCTCAGCTTGCAGCCCGCCCCTGCAGCAGCCACAGGGTTCCCGGGTGCTGGCAACCCTGCGTGGCCAGGTGCTCCTGGGCAGGGGCACAGGCACTGCAGGGGCGCAGTGGTGGCGGCGGCGGACGCAGCTGAGCCGAGAGAAGAGGTTCACCTTCGTGCTGGCTGTGGTCATCGGTGTCTTCGTGCTCTGCTGGTTCCCTTTCTTCTTCAGCTACAGCCTGGGTGCCATCTGCCCGCAGCACTGCAAGGTGCCCCACGGCCTCTTC Cavia_porcellus GCCATCGCGTCGGCCATCACCTTTCTCATCCTCTTCACCATTTTCGGCAATGCGCTGGTAATTCTGGCTGTGTTGACCAGCCGCTCTCTCCGTGCACCACAAAACCTCTTCCTGGTGTCACTGGCAGCAGCCGACATCCTAGTGGCTACTCTTATCATCCCTTTCTCTCTGGCCAACGAGCTGCTGGGCTATTGGTACTTCTGGCGTGCGTGGTGCGAGGTCTACCTGGCGCTAGACGTGCTCTTCTGTACCTCCTCCATCGTGCACCTGTGTGCCATCAGTCTGGACAGATACTGGGCAGTGAGCCGAGCATTGGAGTACAACTCCAAGCGCACTCCACGCCGCATCAAATGCATCATCCTCACCGTGTGGCTCATTGCAGCCGTCATTTCTCTACCGCCCCTCATCTACAAGGGCGACCAGCGCCCAGAGCCCCACGGGCTCCCCCAGTGTGAGCTCAACCAAGAAGCCTGGTACATCTTGGCTTCCAGCATCGGATCTTTTTTTGCTCCCTGCCTCATCATGATTCTCGTCTACCTGCGAATCTATGTAATTGCCAAACGCAGCCACTGCAGA---GGTCTCGGAGCTAAGAGGGGCTCTGGGGAGGGTGAGTCCAAGAAGCCCCGTCCGGCCGCCGGGGGAGTTCCAGCCTCGGCTAAAGTGCCCACCCTGGTCTCTCCTCTATCTTCTGTCGGAGAGGCTAATGGACACCCCAAGCCT---CCAAGGGAGGGGGAGACCCCTGAAGATCCCGAAGCCAGGGCTTTGCCACCCAATTGGTCTGCCCTGCCCAGATCAGTCCAGGACCAGAAGAAGGGGACTAGTGGGGCAACTGCAGAACCCCAAACACTGCCAGCTTCTCCTGCCTCAGTATTCAACCCACCCTTGCAGCAGCCTCAGACTTCCCGGGTGCTGGCCACGCTACGTGGCCAGGTGCTTCTGAGCAAGAATGTGGGTGTGGCCAGTGGGCAGTGGTGGCGCCGTCGGACACAGCTGAGCCGAGAGAAGAGGTTCACCTTTGTGCTGGCGGTGGTCATTGGTGTTTTTGTGGTCTGTTGGTTTCCTTTCTTCTTCAGCTACAGCCTGGGGGCCATCTGCCCACAGCACTGCAAGGTACCCCATGGCCTCTTC Dugong_dugong GCCATCGCGACGGTCATCACCTTCCTCATCCTCTTCACCATCTTCGGCAACTCTCTGGTCATCTTAGCTGTGTTGAC??????CTCTCTGCGCGCCCCGCAGAACCTATTCCTAGTGTCGCTGGCCGCCGCTGACATCATGGTGGCCACGCTCATCATCCCTTTCTCGCTGGCCAACGAGCTGCTGGGCTACTGGTACTTTCGGCGCACGTGGTGCGAGGTGTACCTGGCCCTGGACGTGCTCTTCTGTACCTCGTCCATTGTGCACCTGTGCGCCATCAGCCTGGACCGCTACTGGGCCGTGAGCCGCGCGCTGGAGTACAACTCCAAGCGCACCCCGCGCCGTATCAAGTGCATCATCCTGACGGTGTGGCTCATTGCAGCCGCCATCTCGCTGCCGCCCCTCATTTACAAGGGCGACCAGGGCCCCCAACCCCGCGGGCGCCCCCAGTGCAAGCTCAACCAAGAGGCCTGGTACATCCTGTCCTCCAGCATCGGCTCCTTTTTTGCACCCTGCCTCATCATGATCCTTGTCTACCTGCGCATCTACCTGATTGCCAAACGCAGCCACCGCCGA---GGGCCCGGGGCAAAGGG?GGCCCCAGGAAGGGTGAGTCCAAGCAGCCCCATTCCCTCGATTCAGGGCCTTCAGCCTTAGCCAATCTGCCAACCCTGGCCTCTTCCCTGGCTGTTGCTGGGGAAGCCAATGGACACTCTATGCCC---CCTGGGGAGAGGGAGACTTCAGAAGATCCTGGGACCCCGACATTGCCACCCAGCTGGCCTGTCCTTCCCAACTCAGGCCAGGGCCAGAAGG?GGGTGTCTGTGGGGCATCTCTGGGACCTCCCGCTGTGCCAGCCTCCCCTGCCACGGCTTGCAACCCACCTCTGCAGCAGCCACAGGGCTCTCAGGTGCTGGCCACCCTACGTGGCCAGGTGTTCCTGGGCAGGGGTGTGGGTGCTGCAGGTGGGCAGTGGTGGCGTCGGTGGGCACAGCTGACACGGGAGAAGCGGTTCACCTTCGTGCTGGCTGTGGTCATTGGCGTCTTCGTGCTCTGCTGGTTCCCTTTCTTCTTCAGCTACAGCCTGGGTGCCATCTGCCCACAGCACTGCAAGGTGCCCCACGGCCTCTTC Echinops_telfairi GCCATCGCGGCGGTCACCACCTTCCTCATCCTCTTCACCGTCTTCGGCAATGCCCTGGTCATCTTGGCGGTGCTGACTAGCCGCTCGCTGCGGGCCCCGCAGAACTTGTTCCTGGT?TCGTTGGCCGCCGCGGACATCCTGGTGGCCACGCTCATCAT?CCTTTCTCGCTGGCCAACGAGCTGCTGGGCTACTGGTACTTCTGGCACACGTGGTGCGAGGTGTACCTGGCGCTGGA?GTGCTTTT?TGTACCTCGTCCATCGTGCACCTGTGCGCCATCAGCCTGGACCGCTACTGGGCCGTGAGCCGCGCGCTGGAGTACAACTCCAAGCGCACGCCGCGGCGCATCAA?GGTATCATCCTCACCGTGTGGCTCATCGCCGCAGCCATCTCGCTGCCGCCCCTCATTTACAAGGGCGACCAGGGCCCCCAGCCCCACGGGCGCCCCCAGTGCCGGCTCAACCAGGAAGCCTGGTACATCCTCTCCTCTAGCATTGGCTCCTTCTTCGCACCCTGTCTCATCATGATCCTCGTCTACCTGCGCATCTACCTGATCGCCAAGCGCAGAAACCG?CGG---GGGCCCAGGGCCCAGGGCGCCTCCAAGGGTGGGGCTTCCAAGCAGCCCCATCCCCTTGCTGGAGGGGCTTCAACC------AAGCCGCCAACCCTGACCTCTTCCCTGGCTGTTGCTGGAGAGGTCAATGGACACTCTAAGCCC---ACCGGGCAGGGCAAGACCCCAGAAGATCTTGGGGTGGTGACATTGCCACCCAACTGGCCTGCCCTTCCCAACTCAGGCCAGGGCCAGAAGGAGGGTGTCTGTGGGATATCTCCAGGGCCTGAGGCACTGCCAGCCTCCCCTGCCTCC?CCGGCAGCCCCCAGCTGCAGCAGCCCCAGGGCACTCGGGTACTGGTTACCTTACGTGGCCAGGTGGTCCTGAGCAGGGGTCT?GGTGCTGCAAGCGGCCAATGGTGGCGTCGCAGGACCCAGTTGACCCGGGAGAAGCGGTTCACCTTTGTGCTGGC?GTGGTCATTGGCGTCTT?GTCCTCTGCTGGTTCCCCTTCTTCTT?AGCTACAGCCTGGGTGCCATCTGCCCCCAACACTGCACGGTG?CCCACGGCCTCTTC Elephantulus_rufescens ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Elephas_maximus GCCATCGCGGCGGTCATCACCTTCCTCATCCTCTTCACCATCTTCGGCAACGCCCTGGTCATCTTGGCTGTGTTGACCAGTCGCTCTCTGCGCGCCCCACAGAACCTGTTCCTGGTGTCGCTGGCCGCGGCCGACATCCTGGTGGCCACGCTTATCATCCCGTTCTCCCTGGCCAACGAGCTGCTGGGCTACTGGTACTTCCGGCGCACGTGGTGCGAGGTGTACCTGGCCCTGGACGTGCTCTTCTGTACCTCGTCCATTGTGCACCTGTGCGCCATCAGCCTGGACCGCTACTGGGCCGTGAGCCGCGCGCTCCAGTACAACTCCAAGCGCACCCCGCGCCGCATCAAGTGCGTCATCCTCACTGTATGGCTCATTGCAGCCGCCATCTCACTGCCGCCCCTTATTTACAAGGGCGACCAGGGCCCCCAGCCCCGCGGGCGCCCCCAGTGCAAGCTCAACCAAGAGGCCTGGTACATCCTGTCCTCCAGCATCGGCTCCTTTTTCGCACCCTGCCTCATCATGATCCTCGTCTACCTGCGCATCTACCTGATTGCCAAACGTAGCAACCGCCGA---GGGCCCAGGGCCAAGGGAGCCCCCAGGGAGGGTGAGCCCAAGCAGCCCCATCCCCTCCCTGCAGGGCCTTCAGCCTTAGCCAATTCACCAACACTGGCCTCTTCTCTGGCTGTTACTGGGGAGGCCAATGGACACTCTGAGCCA---CCTGGGGAGAGGGAGACACCAGAAGATCCTGGGACCCTGACATTGCCACCCAGCTGGCCTGTCCTTCCCAACTCAGGCCAGGGCCAGAAGGAGGGTGTCTGTGGGGCATCTCCGGGCTCTCCGGCTGTCCCAGCCTCCCCTGCTTTGGCTTGCAGCCCACCACTGCAGCAGCCAAAGGGCTCTCGGGTGCTGGCCACCTTGCGTGGCCAGGTGCTCCTGGGCAGGGGTGTGGGTACTGCAGGTGGGCAATGGTGGCGTCGGCGGGCACAGCTGACGCGGGAGAAGCGGTTTACCTTCGTGCTGGCCGTGGTCATTGGCGTCTTTGTGCTCTGCTGGTTCCCGTTCTTCTTCAGCTACAGTCTGGGTGCCATTTGCCCGCAGCACTGCAAGGTGCCTCATGGCCTCTTC Equus_asinus ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Equus_caballus GCCATTGCGGCGGTCATCACCTTCCTCATCCTCTTCACCATCTTTGGCAACGCGCTGGTCATCCTGGCTGTGTTGACGAGCCGCTCGCTGCGCGCCCCGCAGAACCTGTTCCTGGTGTCGCTGGCCGCTGC?GACATCCTGGTGGCCACGCTCATCATCCCTTTCTCGTTGGCCAATGAGCTGCTGGGCTACTGGTACTTCCGGCGCACGTGGTGTGAGGTGTACCTGGCGCTCGACGTGCTCTTCTGTACGTCTTCCATCGTGCACCTGTGCGCCATCAGCCTGGACCGCTACTGGGCCGTGACGCGCGCGCTGGAGTACAACACCAAGCGCACCCCGCGCCGCATCAAGTGCATCATCCTCACCGTGTGGCTCATCGCAGCTGTCATCTCGCTGCCGCCCCTTATCTACAAGGGGGACCAGGGCCCCCAGCCGCGCGGG????CGCAGTGCAAGCTCAACCAAGAGGCCTGGTATATCCTGGCCTCCAGCATCGGATCCTTCTTTGCACCC?GCCTCATCATGATCCT?GTCTACCTGCGCATCTACCTGATTGCTAAACGCAGCCACCTCAGA---GGTCCCAGGGCCAAGGGAGGCCCTGGGGGAGGTGGGTCTAAGCAGCCCCACCCAGTCCCTGCAGGAGCTTCAGCCTCAGCCAAACTGCCCACTGTGGCCTCTTGTCTGGCT?CTGCCG?AGAGGCCAATGGACACTCCGAGCCC---ACTGGGGAG---GAGACCCCTGAA?ATTCTGGGACCCCTGCCTTGCCC?CCAGCTGGCCTGCCCTTCCTAGTTCAGGCCAGGATCAGAAGGAAGGAGTTTGTGGGGCATCTCT?GAGCCTCA?GCGTTGCCAGCATCTCCTGCCTCAGCTTGCAGCCCACCCCTGCAGCAGCCACAGGGCTCCCGGGTGCTGGCGACCCTACGTGGCCAGGTGCTCCTGGGCAGGGGTGTGGCCACTGCAGGTGCGCAGTGGTGGCGGCGGCGGGCACAGCTGACTCGGGAGAAGCGGTTCACCTTCGTGCTGGCCGTGGTCATTGGCGTCTTCGTGCTCTGCTGGTTCCCCTTCTTCTTCAGCTACAGCCTGGGTGCCATCTGCCCCCAGCACTGCAAGGTGCCCCACGGCCTCTTC Erinaceus_europaeus GCCATCGCAGCGGTCATCACCTTCCTTATCCTCTTCACCATCTTCGGCAACGCGCTGGTTATCTTGGCTGTGCTGACTAGCCGCTCGCTGCGCGCCCCGCAGAACCTGTTCCTGGTGTCGCTGGCCGCCGCGGACATCCTGGTGGCCACCCTCATCATCCCTTTCTCGCTCGCCAACGAGCTGCTCGGGTACTGGTACTTCAGGCGCACGTGGTGCGAGGTGTACCTGGCGCTCGACGTGCTCTTCTGCACCTCGTCCATCGTGCACCTGTGCGCCATCAGCCTGGACCGCTACTGGGCTGTGAGCCGCGCGCTCGAGTACAACTCCAAGCGCACCCCTCGCCGCATCAAGTGCATCATCCTCACCGTGTGGCTCATTGCAGCGGTCATCTCCCTGCCGCCCCTCATCTACAAGGGTGACCAGGGCCCTCAGCCCCGGGGGCGTCCCCAGTGCAAACTCAACCAGGAAGCCTGGTACATCTTGGCCTCCAGCATCGGATCCTTCTTCGCACCCTGCCTCATCATGATCCTTGTCTACCTGCGCATCTACCTGATCGCCAAACGCAGCCACTGCAGA---GGCCCCAGGGCCAAGGGAGCCCCTGGGAAGGGTGAGTCTAAGCAGACGGGCCAGGCCTCCCTGGGAGCTCCAAGCTCAGCCAAACTGCCAAACCTGGTCTCTCGTTTGGTTGCTGCCAGAGAGGCCAATAGACACTCCAAGTCC---ACTGGGGAGGGGGAGACCCCTGAAGGTCCTGGGACTCCGGGGGTGCCACCCAGCTGGCCTCCTCTCCCCAGCTCAGGTCGGGGTCAGGAGGAAGATATCTACAGGGCATCACCTGAGCCTCAGGCTGTGCCTGTGTCTCCTGCCTCAGCTTGCAGCCCACCCCTGCAGCAGCCACAGGGCTCCAGAGTGCTGGCGACCCTTCGAGGCCAAGTGCTCCTGAGTAGGGGTGTGGGCACAGCAAGTGGGCAGTGGTGGCGTCGGCGGGCACAGCTGACCCGGGAGAAGCGGTTCACCTTTGTGCTGGCTGTGGTTATTGGTGTCTTTGTGCTCTGCTGGTTCCCTTTCTTCTTCAGTTACAGCCTGGGTGCCATCTGCCCACAGCACTGCAAAGTGCCCCATGGCTTATTC Homo_sapiens GCCATAGCGGCGGCCATCACCTTCCTCATTCTCTTTACCATCTTCGGCAACGCTCTGGTCATCCTGGCTGTGTTGACCAGCCGCTCGCTGCGCGCCCCTCAGAACCTGTTCCTGGTGTCGCTGGCCGCCGCCGACATCCTGGTGGCCACGCTCATCATCCCTTTCTCGCTGGCCAACGAGCTGCTGGGCTACTGGTACTTCCGGCGCACGTGGTGCGAGGTGTACCTGGCGCTCGACGTGCTCTTCTGCACCTCGTCCATCGTGCACCTGTGCGCCATCAGCCTGGACCGCTACTGGGCCGTGAGCCGCGCGCTGGAGTACAACTCCAAGCGCACCCCGCGCCGCATCAAGTGCATCATCCTCACTGTGTGGCTCATCGCCGCCGTCATCTCGCTGCCGCCCCTCATCTACAAGGGCGACCAGGGCCCCCAGCCGCGCGGGCGCCCCCAGTGCAAGCTCAACCAGGAGGCCTGGTACATCCTGGCCTCCAGCATCGGATCTTTCTTTGCTCCTTGCCTCATCATGATCCTTGTCTACCTGCGCATCTACCTGATCGCCAAACGCAGCAACCGCAGA---GGTCCCAGGGCCAAGGGGGGGCCTGGGCAGGGTGAGTCCAAGCAGCCCCGACCCGACCATGGTGGGGCTTTGGCCTCAGCCAAACTGCCAGCCCTGGCCTCT---GTGGCTTCTGCCAGAGAGGTCAACGGACACTCGAAGTCC---ACTGGGGAGGGGGAGACCCCTGAAGATACTGGGACCCGGGCCTTGCCACCCAGTTGGGCTGCCCTTCCCAACTCAGGCCAGGGCCAGAAGGAGGGTGTTTGTGGGGCATCTCCAGAACCCCAGGCAGTGCCAGTGTCTCCGGCCTCAGCTTGCAGCCCCCCGCTGCAGCAGCCACAGGGCTCCCGGGTGCTGGCCACCCTACGTGGCCAGGTGCTCCTGGGCAGGGGCGTGGGTGCTATAGGTGGGCAGTGGTGGCGTCGAAGGGCGCACGTGACCCGGGAGAAGCGCTTCACCTTCGTGCTGGCTGTGGTCATTGGCGTTTTTGTGCTCTGCTGGTTCCCCTTCTTCTTCAGCTACAGCCTGGGCGCCATCTGCCCGAAGCACTGCAAGGTGCCCCATGGCCTCTTC Loxodonta_africana ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Orycteropus_afer GCCATCGCGGCGGTCATCACCTTCCTCATCCTCTTCACCATCTTCGGCAACGCTCTGGTGATCTTGGCTGTGTTAACTAGTCGCTCTCTGCGTGCCCCGCAGAACTTGTTCCTAGTGTCGCTGGCCGCCGCTGACATCCTGGTGGCCACTCTCATCATCCCTTTTTCGCTGGCCAACGAGCTGCTGGGCTACTGGTACTTCCGGCGCACCTGGTGCGAGGTGTACCTGGCACTGGATGTACTCTTCTGTACCTCGTCTATCGTGCACCTGTGCGCCATCAGCCTGGACCGCTACTGGGCAGTGAGTCGCGCGCTCGAGTACAACTCCAAGCGCACCCCACGCC?CATCAAGTGCATCATCCTCACTGTGTGGCTCATTGCAGCAGCCATCTCGCTGCCGCCCCTCATTTACAAGGGGGACCAGGGCCCCCAACCCCGCGGACGCCCCCAGTGCAAGCTCAACCAAGAGGCCTGGTACATCCTCTCCTCCAGCATCGGCTCCTTCTTTGCACCCTGCCTCATCATGATCCTGGTCTACCTGCGCATCTACGTGATTGCCAAACGCAGCAACCGCCGA---GGGCCCAGGGCCAAGGGGGCCTCCAGGGAGGGTAAGTCCAAGCAGCCCCATCCCTTCCCTGCAGGGGCTTCT---TCAGCCAGGCCACCAACCCTGACCTCTTCTCTGGCTGTTGCTGGAGAGGCCAATGGACACTCTAAGCCC---ACTGGAGAGGGGAAGACGCCAGAAGATCCTGGGACCCTGACGTTACCACCTAGCTGGCCTGCCTTTCCCAACTCAGGTGAGGGCCAGAAAGAGGGTATCTGTGGGACATCTCCAGAACCTCAGGCTGCTCCAGCCTCCTCTGCCTCAGCTTGCAACCCACCCCTACAACAGCCACAGGGCTCTCGGGTGCTGGCTACCTTACGCGGCCAGGTGCTCTTGGGCAGGGGTTTGGG?GCTGCAGGTGGGCAGTGGTGGCGTCGGCGGGCACAGCTGACACGGGAGAAGCGGTTCACCTTTGTGCTGGCTGTGGTCATTGGTGTCTTCGTGCTCTGCTGGTTCCCCTTCTTCTTTAGCTACAGCCTGGGTGCCATCTGCCCCCAGCGCTGCAAGGTGCCCCATGGCCTCTTC Oryctolagus_cuniculus GCCATCGCGGCGGTCATCACCTTCCTCATCCTCTTCACCATCTTCGGCAACGCTCTGGTCATCCTGGCTGTGTTGACCAGCCGCTCGCTGCGT?CCCCGCAAAACCTGTTCCTGGTGTCGCTGGCCGCGGCCGACATCCTGGTGGCCACGCTCATCATCCCCTTCTCGCTGGCCAACGAGCTGCTGGGCTACTGGTACTTCCGGCGCACGTGGT???AGGTGTACCTGGCACTCGATGTGCTCTTCTGCACGTCGTCCATCGTGCACCTGTGCGCCATCAGCCTGGACCGCTAC?GGGCCGTGAGCCGGGCTTTGGAGTACAAC?GCAAGCGCACCCCGCGGCGGATCAAGTGTATCATCCTCACCGTGTGGCTCATCGCCGCCGCCATCTCGCT?CCCCCCCTCATCTACAAGGGCGACCAGGGCCCCCAGCCCCACGGCGCCCCGCAGTGCAAGCTCAACCAAGAGGCCTGGTACATCTTGTCCTCCAGCTTGGGCTCCTTCTTTGTGCCCTGTCTCATCATGATCCTCGTCTACCTGCGTATCTACCTGATCGCCAAACGCAGCCACCGCAGA---GGTCCCAGAGCCAAGGGGGGTCCCGGGGAGGGAGAGTCCAGGCAGGCCTGCCCTGTCCCTGGGGGCCCTTCTGCCTCTGCCAAGCTGCCAACCCTGGCCACTCCTGTGGCTTCTGCCAGCGAGGCCAATGGACCCTCCAAGCCT---GCTGGGGAGGGGGAGACCCCCGAAGACCCTGGGACCCAGGCCTTGCCGCCCGGCTGGGCCACCCTTCCCAACTCAGGCCAGGGCCAGAAAGAGGGTGTTTCGGGTGCATCTCTGGAGCCTCAGGCAGTGCCAGTGTCTCCTGCCTCAGTGGGCAGCCCACCCTTGCAGCAGCCGCAGGGCTCCCGGGTGCTGGCCACCCTCCGTGGCCAGGTGCTCGTGGGCCGGGGCGTGGGTGCCATGAGCGGGC?GTGGTGGCGTCGCCGGGCGCAGCTGAGCCGGGAGAAGCGTTTCACCTTCGTGCTGGCCGTGGTCATCGGCGTCTTTGTGCTCTGCTGGTTCCCCTTTTTCTTCAGCTACAGCCTGAGTGCCATCTGCCCGCAGCAGTGCCGGGTGCCCCACGGCCTCTTC Procavia_capensis GCCATTGCGGCGGTCATCACATTCCTCATCCTCTTCACCATTTTCGGCAATGCTCTGGTCATCTTGGCTGTGTTGACTAGTCGCTCTCTGCGTGCCCCACAGAATCTGTTCCTAGTGTCACTGGCCGCAGCTGACATCCTGGTGGCCACGCTTATCATCCCCTTCTCACTGGCCAACGAACTGCTGGGCTACTGGTACTTTTGGCGCACGTGGTGCGAGGTGTACCTAGCCCTGGACGTTCTCTTCTGTACCTCGTCCATAGTGCACCTGTGCGCCATCAGCCTGGACCGCTACTGGGCAGTGAGCCGTGCGCTTGAGTACAACTCTAAGCGCACCCCGCGCCGCATCAAGTGCATCATCCTCACTGTGTGGCTCATTGCAGCCGCCATCTCGCTTCCGCCCCTCATTTACAAGGGCGACCAGGGGCCCCAACCCCGTGGGCGACCCCAGTGCATGCTCAACCAAGAGGCCTGGTACATTCTGTCCTCCAGCATCGGCTCTTTTTTTGCACCCTGCCTCATCATGATCCTGGTTTACCTGCGAATCTACCTGATTGCCAAACGCAGCAACCGCAGA---GGGCCCAGGGCCAAGGGGGCCCCCGGGGAGGGTGAGTCCAAGCAGCCTCATCCCCTCACTGCAGGGCCTTTGGCCTTAGCTAATCCACCAACGCTGGCCACTTCTCTGGCTGTTGATGGGGAGGCCAATGGACACTCTAAGCTC---ACTGGGGAGAGGGAGACTTCGGAAGATCCTGGGACCCCGACATTGCAACGCAGCTGGCCTGTCCTTCCCAGCTCAGGGCAGAGCCAGAAGAAAGGTGTTTGTGGGGCATCTCCTAGGCCTCTGTCCGTGCCAGCCTCCCCTGCCTCGGCTTGTGGCCCACACCTTCAGCAGCCACAGGGCTCTCAGGTGCTGGCCACTCTACGTGGCCAGGTGCTTCTGGGCAGGGGTGTGGGTGCTGCAGGTGGGCAGTGGTGGCGTCGGCGGGCGCAGCTGACACGGGAGAAGCGATTCACCTTTGTGCTGACTGTGGTCATTGGTGTCTTCGTGCTCTGCTGGTTTCCTTTCTTCTTCAGCTATAGCCTGGGTGCCATCTGCCCACAGCACTGCAAGGTGCCCCATGGCCTCTTC Rattus_norvegicus GCCATCGCGTCGGCCATCACCTTTCTCATCCTTTTCACCATTTTCGGCAATGCGCTGGTCATTCTGGCTGTGTTGACCAGCCGCTCACTCCGTGCACCACAAAACCTGTTCCTGGTGTCACTGGCAGCAGCCGACATCCTAGTGGCTACTCTCATCATCCCTTTCTCTCTGGCCAACGAGCTGCTGGGCTACTGGTACTTCTGGCGTGCGTGGTGCGAGGTCTACCTGGCGCTAGACGTGCTCTTCTGTACCTCCTCCATCGTGCACCTGTGTGCCATCAGCCTGGACAGGTACTGGGCAGTGAGCCGAGCATTGGAGTACAACTCCAAGCGCACTCCGTGCCGCATCAAGTGCATCATCCTCACTGTGTGGCTCATTGCAGCTGTCATTTCTCTACCGCCCCTCATCTACAAGGGCGACCAACGCCCCGACGCCCGCGGGCTCCCCCAGTGTGAGCTCAACCAGGAGGCCTGGTACATCTTGGCTTCCAGCATCGGATCTTTTTTTGCTCCCTGCCTCATCATGATCCTCGTCTACCTGCGAATCTACGTGATTGCCAAACGCAGCCACTGCAGA---GGTCTCGGAGCCAAGAGGGGCTCTGGAGAAGGTGAGTCCAAGAAGCCCCAGCCGGTTGCTGGGGGAGTGCCAACCTCAGCTAAGGTGCCCACCCTGGTCTCTCCTCTATCTTCTGTTGGAGAGGCCAATGGACACCCCAAGCCT---CCAAGAGAGGGGGAGACCCCTGAAGATCCTGAGGCCAGGGCTTTGCCCCCAACTTGGTCTGCCCTTCCCAGATCAGGCCAAGGCCAGAAGAAGGGGACTAGTGGGGCGACTGCAGAACCCCAAACACTGCCAGCATCTCCTGCCTCGGTATGCAACCCACCCTTGCAGCAGCCTCAGACTTCTCGGGTACTGGCCACACTTCGTGGCCAGGTGCTTCTGGGCAAGAATGTGGGAGTTGCCAGTGGGCAGTGGTGGCGCAGACGGACACAGCTGAGCCGGGAGAAGAGGTTCACCTTTGTGCTGGCCGTGGTCATTGGAGTTTTCGTGGTCTGCTGGTTTCCTTTCTTCTTCAGCTACAGCCTGGGGGCCATCTGCCCACAGCACTGCAAGGTACCGCATGGCCTCTTC Scalopus_aquaticus ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Trichechus_manatus ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = A2AB_18_taxa) = N: 1-1134; CODONPOSSET CodonPositions (CHARACTERS = A2AB_18_taxa) = N: 1-1134; END;