#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 18:11 GMT

TreeBASE (cc) 1994-2008

Study reference:
Guo L., Hyde K.D., & Liew E. 2001. Detection and taxonomic placement of endophytic
fungi within frond tissues of Livistona chinensis based on rDNA sequences. Molecular
Phylogenetics and Evolution, 20(1): 1-13.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S683]

BEGIN TAXA;
        TITLE  'P2-6c';
        DIMENSIONS NTAX=11;
        TAXLABELS
            Colletotrichum_acutatum
            Colletotrichum_coccodes
            Colletotrichum_fragariae
            Colletotrichum_musae
            Colletotrichum_orbiculare
            Elsinoë_australis
            Glomerella_cingulata
            Glomerella_graminicola
            Hypocrea_rufa
            'P2-6'
            Saccharomyces_cerevisiae
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2265]

	TITLE 'ITS2 with P2-6';
	LINK TAXA = 'P2-6c';
	DIMENSIONS NCHAR=171;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                     10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170 ]
[                                      .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         . ]
Colletotrichum_acutatum       AACCCTCAAGCACCGCTTGGTTTTGGGG------CC-CCACGGCCGACGTGGGCCCTT---AAAGGTAGTGGCGGACCCTCCCGG-AGCCTCCTTTGCGTAGTAACTA--ACGTCTCGCACTGGG-ATCCGGAGGG-ACTCTTGCCGTTAAACCCCCAAATTTTTT-----
Colletotrichum_coccodes       AACCCTCAAGCTCTGCTTGGTGTTGGGG------CC-CTACGGTTGACGTAGGCCCTT---AAAGGTAGTGGCGGACCCTCTCGG-AGCCTCCTTTGCGTAGTAACTA--ACGTCTCGCACTGGG-ATTCGGAGGG-ACTCTTGCCGTAAAACCCCCAAATTTTTA-----
Colletotrichum_fragariae      AACCCTCAAGCTCTGCTTGGTGTTGGGG------CC-CTACAGCTGATGTAGGCCCTC---AAAGGTAGTGGCGGACCCTCCCGG-AGCCTCCTTTGCGTAGTAACTTT-ACGTCTCGCACTGGG-ATCCGGAGGG-ACTCTTGCCGTAAAACCCCCCAATTTTCC-----
Colletotrichum_musae          AACCCTCAAGCTCTGCTTGGTGTTGGGG------CC-CTACAGCACATGTAGGCCCTC---AAAGGTAGTGGCGGACCCTCCCGG-AGCCTCCTTTGCGTAGTAACTTT-ACGTCTCGCACTGGG-ATCCGGAGGG-ACTCTTGCCGTAAAACCCCCCAATTTTCC-----
Colletotrichum_orbiculare     AACCCTCAAGCACCGCTTGGCGTTGGGG------CTTCCACGGCTGACGTGGGCCCTC---AAAGACAGTGGCGGACCCTCGCGG-AGCCTCCTTTGCGTAGTAACATA-CAACCTCGCACCGGG-ACCCGCAGGGCACTCCTGCCGTAAAACCCCCCAATTTTTACAAGG
Elsinoë_australis             ACCAATCAAGCCCCGCTTGGTATTAGGCGCCTGGCCGCCCCCCCCGTGGCCGGCCCGCCCGAAATGCATCGGCGAGG---CACCG--ACCCCCGGCGTGTTAGAATTT---CGAAACGT-CAGGAGCACCGGTGTTAACCTCTGCCGTGAAACCTTTCAATTTTTCTAAG-
Glomerella_cingulata          AACCCTCAAGCTCTGCTTGGTGTTGGG-------CC-CTACAGCTGATGTAGGCCCTC---AAAGGTAGTGGCGGACCCTCCCGG-AGCCTCCTTTGCGTAGTAACTTT-TCGTCTCGCACTGGG-ATCCGGAGGG-ACTCTTGCCGTAAAACCCCCCAATTTTCCAAAGG
Glomerella_graminicola        AACCCTCAAGCTCTGCTTGGTGTTGGGG------CC-CTACGGTTGACGTAGGCCCTC---AAAGGTAGTGGCGGACCCTCCCGG-AGCCTCCTTTGCGTAGTAACT-A-ACGTCTCGCATCGGG-ATCCGGAGGG-ACTCTTGCCGTAAAACCCCCCAATTTTTCAATGG
Hypocrea_rufa                 AACCCTCGAACCCCTCCGGGGGGTCGG-------CGTTGGGGACTTCGGGAACCCCTCCCGAAATACAGTGGCGGTC--TCGCCGCAGCCTCTCATGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGT-CCGTAAAACACCCAACTTCTGAAATG-
'P2-6'                        AACCCTCAAGCTCTGCTTGGTGTTGGGG------CC-CTACAGCTGATGTAGGCCCTC---AAAGGTAGTCGCGAACCCTCTCGGGAGCCTCCTTTGCGTAGTAACTTT-ACGTCTCGCACTGGGGATCCGGAGGG-ACTCTTGCCGTAAAACCCCC-AACTTTCCAAAGG
Saccharomyces_cerevisiae      AAATTGCTGGCCTTTCATTGGATGTTTTTTTTTTCCAAAGAGAGGTTTCTCTGCGTGCTTGAAATGCAAGTACGGTCGTTTTAGGTTACCAACTGCGGCTAATCTTTTTTACTGAGCGTATTGGAACGTTATCGATAAGAAGAGGCGTCTAGGCAACAATGTTCTTAAAGT
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = 'ITS2 with P2-6') = 
		N: 1-171;
CODONPOSSET  CodonPositions (CHARACTERS = 'ITS2 with P2-6') = 
		N: 1-171;
END;