#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 13:42 GMT TreeBASE (cc) 1994-2008 Study reference: Guo L., Hyde K.D., & Liew E. 2001. Detection and taxonomic placement of endophytic fungi within frond tissues of Livistona chinensis based on rDNA sequences. Molecular Phylogenetics and Evolution, 20(1): 1-13. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S683] BEGIN TAXA; TITLE 'P4-4'; DIMENSIONS NTAX=20; TAXLABELS Candida_glabrata Capronia_coronata Capronia_pilosella Capronia_pulcherrima Coniosporium_perforans Dothidea_hippophaeos Elsinoe_australis Exophiala_jeanselmei Exophiala_spinifera Gelasinospora_nigeriensis Glomerella_graminicola Hypocrea_rufa 'P4-4' Phaeococcomyces_catenatus Phaeocryptopus_gaeumannii Rhinocladiella_atrovirens Saccharomyces_cerevisiae Torulaspora_delbrueckii Trimmatostroma_cordae Xylaria_hypoxylon ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2267] TITLE 'ITS1 5.8s ITS2 with P4-4'; LINK TAXA = 'P4-4'; DIMENSIONS NCHAR=635; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Candida_glabrata GCCGACAAAGACCTGGGAGTGT----GCGTGGA---TCTCTCT---ATTCCAAAGGA----------GGTGTTTTA-TCACACGACTCGACACTTTCTAATTACTACACACAGTGGAGTTTACTTTACTACTATTCTTTTGTTCGTTGGGGCTCTTTCGGGGGGGAGTTCTCCCAGTGGATGCAAACACAAACAAATATTTTTTTAAACTAATTCA---------GTCAACA-CAAGA--TTTC-TTTTAGTAGAAAACAACTTCAAAACTTTCAACAATGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATT-CCGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCTCTGGTATTCCGGGGG-GCATGCCTGTTTGAGCGTCATTTCCTTCTCAAACACATTGTG-TTT------GGTAGTGAGTGATACTCGTTTTTGAGTTAACTTGAAATTGTAGGCCATATCAGTATGTGGGACACGAGCGCAAG---CTTCTCTATTAATCTGCTGCTC--GTTTGCGCGAG--CGGCGGGGGTTAATACTGTATT--AGGTTTTACCAACT--------CGG-T-GTTGATCTAGGG Capronia_coronata AAGAGTTAGGGTCTTCT-------CGGCCCGACC--TCCCAACCCCATGTTTATCAAACC----TGTGTTGCTTCGGCGCGCCCG--TCTTCGT---------------------GACC-GCCG--GAGGATCGTCGA------AAGGCGTCCT-CTGGCCCGCGC---CCGCCGATGGCCTACGCTT--AA-AATTCTG-AATCAACCG-TGTCTC------ATGTCTAAGTCC-----TTCAT-----------AAATAAAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCAGTGAGTCATCGAA-TCTTTGAA-CGCACATTGCGCCCTTTGGTATTCCGAAGG-GCATGCCTGTTCGAGCGTCATTATCACCCCTCAGGCCCCCGGGCTT------GGTGTTGGACGGCTTGGTCGAG---TC----CCCTCG---ACCCCTCCTAAAGACAATGACGGCGGCCTCGCGGGACCCCCGGTACACTGAGCTTC-TTAACTGAGCACGT-ACCGGACG---CATGGGTACCCAGGCTCCGGTCTTCTCCCTTCACAGGGAAACT--TTTTCAA-GG Capronia_pilosella AAGAGTTAGGGTCTTCT-------AGGCCCGACC--TCCCAACCCTGTGTTTAACAAACCA---TTTGTTGCTTCGGCGGGCCCG--TCTTTAT-T-------------------GACC-GCCG--GAGGACCGTCGA------GAGACGCCCT-CTGGCCAGCGC---CCGCCGATGGCCAACTATACCTA-AACTCT-GAAT-AAACA-TGCCT-------ATGTCTAAGTTA-----TTTGTT----------AAATAAAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCAGTGAGTCATCGAA-TCTTTGAA-CGCACATTGCGCCCTTTGGTATTCCGAAGG-GCATGCCTGTTCGAGCGTCATTATCACCCCTCAAGCCCCTGGGCTT------GGTGTTGGACGGTTTGGTGAAG-CCTC----CGGGCG-TCACCCCTCCTAAAGACAATGACGGCGGCCTGTTGGAACCCCCGGTACATTGAGCTTC-TTAACTGAGCACGT-ATCGGAT----CAAGGGAACCCAGGCCCCGGTCTTCTCCCTTTATTGGGAAACTCCTTTTTAA-GG Capronia_pulcherrima AAGAGTTAGGGTCTTCT-------AGGCCCGACC--TCCCAACCCTGTGTTTAACAAACCA---TTTGTTGCTTCGGCGAGCCCG--TCTTTAT-T-------------------GACC-GCCG--GAGGACCGTCGA------GAGACGCCCT-CTGGCCAGTGC---CCGCCGACGGCCAACTATACCTA-AACTCTTGAAT-AAACA-TGCCT-------ATGTCTAAGTAA-----TTTATT----------AAATAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCAGTGAGTCATCGAA-TCTTTGAA-CGCACATTGCGCCCTTTGGTATTCCGAAGG-GCATGCCTGTTCGAGCGTCATTATCACCCCTCAAGCCCCCGGGCTT------GGTGTTGGACGGTTTGGTGAAGGCCTC----CGGGCGGTCACCCCTCCTAAAGACAATGACGGCGGCCTGTTGGAACCCCCGGTACATTGAGCTTC-TTAACTGAGCACGT-ATCGGAT----CAAGGGAACCCAGGCCCCGGTCTTCTCCCTTCATTGGGAAAAT--TTATCAA-GG Coniosporium_perforans CCGAGTTAGGGTCTTCCCCTCCAGGAGCCCGACC--TCCCAACCCTGTGTCTAAACTACCTTGTCG--TTGCTTCGGCGGACCGG---TTGACCAACTGGTC----TT-------GACC-GCCG---GGGGGG-----------CCTCCCCCCCC-TGGAGAGCGT---CCGCCGACGGCCC-AACCACACA-AACTCTTGTACCAAACCATGT----------CGTCTGAAT--GTA--CTT--GAT-TAAGAATCAAAAAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTTCCGTGAGTCATCGAA-TCTTTGAA-CGCACATTGCGCCCACTGGTATTCCGGTGG-GCATGCCTGTTCGAGCGTCATTATCCTCCCTC-AAACCCCGGGTTT------GGTGTTGGACCCAAGTTGTGCGT--------CTGAAC--AACTGGTCCCAAAGACAATGACGG-CGTCCGTGGG-ACCCTCGGTGCAACGAGCTTC----TAGGAGCACGC-GTCGAGT---TTCAAGGTCCTTCCGGGCCGGCCTCCTTTTT---------TTACTTTTACTAA-GG Dothidea_hippophaeos AAGATTGAGTGTCGCGACCTAAAAAATCGCGACCACTTCCAACCCTCTGTTGTTATAACTAC--CTTGTTGCTTTGGCGGGACCGTTCGGTCCT----------------------CCGAGCGC-A----CCAGT----------CCTCG--GA-CAGGTGAGCGC---CCGCCAGAGT-CC-----AACCA-AACTCTTGTTTTTAACC-AGT----------CGTCTGAGTATAAA--ATTTT-----------AATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTGTTCGAGCGTCATTA-CACCACTC--AAGCACTG-CTT------GGTATTGGGC-----ATCGTCCGTCGA----AAGGCG--GGCGTGCCTCGAAGACCTCGGCGG-GGTTTCTCCA-ACTTCGGGCGTAGTAGAGTTAAA--TCGAACGTCTT-ATAAGCT---TGGTGGGACTCCATTGCCGTTAAACCTTT--------------TATTTTTATA-GG Elsinoe_australis ACGAGGAAGGGTT-T--CCGAAAGGAGCCCGAAC--TCCCCACCCTTTGCTGTTGCGAAT-C---T-GTTGCTTCGGCGGGCCCGCCCCCCCAT----------------------CCCTGGGGGGGCGGCCGGG----------CCTCACCGC-CCGGACAGCGC---CCGCCGGAGGACC-----GAATC-AACTCTGTTTTTAACCA-TAA----------TGTCGGAGTACTTT--TGTAC-----------AATCAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTGTTCGAGCGTCATTT-CACCAATC--AAGCCCCG-CTT------GGTATTAGGCGCCTGGCCGCCCCCCCC----GTGGCC--GGCCCGCCCGAAATGCATCGGCG--AGG--CACCG-ACCCCCGGCGTGTTAGAATTTC----GAAACGTC---AGGAGCACC-GGTGTTAA--CCTCTGCCGTGAAACCTTTCA---------AACTATTTTTCTA-AG Exophiala_jeanselmei CCGAGTTAGGGTCCTCA-CA----GGGCCCGACC--TCCCAACCCTTTGTTTATGATACCT---AGTGTTGCTTCGGTAGGCCTGG-TCTCC-----------------------GACCTGCCG--GGGGGCCGT---------GAAACGCCCCGCCGGAGAGCGC---CTGCCGACAGCCCCAACCTTTAA-AATTCTT-AACCAAACG-TGTCT--------TGTCTGAGTAAACG--TCTTTT---------AAATAAAAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCTCGTGAGTCATCGAA-TCTTTGAA-CGCACATTGCGCCCTTTGGTATTCCGAAGG-GCATGCCTGTTCGAGCGTCATTTTCACCCCTCAAGCCCCCGG-CTT------GGTGTTGGACGGTTTGGTCTCGGGTCCG--ACCCCCCTTGACCCCTCCCAAAGACAATGACGGCGGGCTGTTCG-ACCCCCGGTACACTGAGCATC-TTAACGGAGCACGT-ACCGGTCCT-TTGAGGGTCGACGGCACCCGGTCT-ACACCTT--------ATATCTTTTACAA-GG Exophiala_spinifera CCGAGTTAGGGTCCTCA-C-----AGGCCCGACC--TCCCAACCCATTGTTTATGATACTC---AGTGTTGCTTCGGCAGGCCTGG-TCTTT-----------------------GACCTGCCG--GAGGGCCGT---------AACACGCCCC-CCGGAGAGCGC---CTGCCGACGGCCCCAAC-TTCAA-AATTCTT-AACTAAACA-TGTCT-------TTGTCTAAGTAAA-G--TCTTTA---------ATAA--AAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCTCGTGAGTCATCGAA-TCTTTGAA-CGCACATTGCGCCCTTTGGTATTCCGAAGG-GCATGCCTGTTCGAGCGTCATTTTCACCCCTCAAGCCCCCGG-CTT------GGTGTTGGACGGTTTGGTCCCGGGACC------CCCCTGGACCCCTCCCAAAGACAATGACGGCGGGCTGTCGC-ACCCCCGGTACACTGAGCATC-TTCACGGAGCACGT-ACCGGTC---TTCAGGGACGACGGCACCCGGTCTCACACCT---------ATATCTTT--CAA-GG Gelasinospora_nigeriensis ------CAGAGTTGC--------------AAAACTCCCACAAACCATCGCGAATCTTACCCGT-ACGGTTGCCTCGGCGCT--GGCGGTCCGGAAGGCC----------------CTCGGGCCCCCGGATCCTCGGGT-------CTCCCGCTCGCGGGAGGCTGG--CCCGCCGGAGTGCCGAAAC------CAAACTCTTGATATTTTATGTCTC---------TCTGAGTAA-AC--TTTT-----------AAA-TAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCTCGCCAGTATTCTGGCGA-GCATGCCTGTTCGAGCGTCATTT-CAACCATC--AAGCTCTGCTTG--------CGTTGGGGATCCGCGGCTGCCCG---------------CGGTCCCTCAAAAACAGTGGCGG-GCTCGCT-AGTCACACCGA-GCGTAGTAACTCT-----ACA--TCGT-TCTGGTCGTGCGGCGGGTTCTTG---CCGTAAAACCCCCC-------------AATTTCT-AA-GG Glomerella_graminicola ------TCGAGTT----------------ACCGCTCT-ACAACCCTTTGTGAA-CATACCTA--ACTGTTGCTTCGGCGGGCAGGGGGTCCCCCCGGG-----------------GACGCCCTCCCGG--CCCCGC---------CCCCCTACCAGGGGACGTGGC--GCCCGCCG-GAGGATACCC------AACTCTATTTTAACGACGTTTCT----------TCTGAGTGGCAC--AAGC-----------AAA-T-AATTAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCGCCAGCATTCTGGCGG-GCATGCCTGTTCGAGCGTCATTT-CAACCCTC--AAGCTCTGCTTG-------GTGTTGGGGCCCTACGGTTGACGT-A---------------GGCCCTCAAAGGTAGTGGCGG-ACCCTCCCGGAGCCTCCTTTGCGTAGTAACTA------ACGTCTCGC-ATCGGGATC-CGGAGGGACTCTTG--CCGTAAAACCCCCC-------------AATTTTTCAATGG Hypocrea_rufa ------CCGAGTTT---------------ACAACTCCCA-AACCCAATGTGAACCATACCAA--ACTGTTGCCTCGGCGGG--GTCACGCCCCGGGTGC----------------GTCGCAGCCCCGGAACCAGG----------CGCCCGCCGGAGGGACCAACC--AAACTCTTTCTGTAGTCCC------CTCGCGGACGTTATTTT-TACAGC---------TCTGAGCAA-AA--ATTC-----------AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCGCCAGTATTCTGGCGG-GCATGCCTGTCCGAGCGTCATTT-CAACCCTCG-AACCCCTCCGGGGG-GTCGGCGTTGGGGACTTCGGGAACCCCTAAG---ACGGGA-TCCCGGCCCCGAAATACAGTGGCGG-TCTCGCC-GCAGCCTCTCATGCGCAGTAGTTTG----CACAACTCGC-ACCGGGAGCGCGGCGCGTCCACGT--CCGTAAAACACCC--------------AACTTCTGAAATG 'P4-4' CCGAGTTAGGGTCCCTCCCAC--GGGGCCCGACC--TCCCAACCCCGTGTCTAATAAACCTGTACGTGTTGCTTCGGCGGACCGG---TTCGCTGCGTGGTCTCACGACCACAACGCCT-GCCGCCGGGGGAAAAGGAGTTTACCCTCCGCCCCC-TGGAGAGCGT---CCGTCGATGGCCC-AACCAAACA-AACTCCCAAACCAAAATGTATGTGAAACACAATTCTGAATCAGAC--CTTTTGATATACCAATCAAAAA--CAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTTCCGTGAGTCATCGAA-TCTTTGAA-CGCACATTGCGGCCTTTGGCATTCCGAAGG-GCATGCCTGTTCGAGCGTCATTATCCTCCCTCCAAAACCCTGCTTTACCGCGGGTGTTGGACCGCGTTGGACCGTT--C----GCGGCC--AACTGGTCTCAAAGACAATGACGGGCGTCCATGGGGACCCTCTTCGCACTGAGCTTT----CCGGAGCACGC-GTCGAGT---TGCAAGGTCTTGTGGGCCCGGCCACCTCTAA---------ATCTATTTTTTCA-GG Phaeococcomyces_catenatus CCGAGTTAGGGCCTCGT--T-----GGCCCGACC--TCCCAACCCCTTGTTTAATTATACCATTTG--TTGCTTCGGCGGGCCGG--TCTACCCA--------------------GACC-GCCGGAGGGTGCA------------CACCGCCCCTCTGGAGAGTTTTGCCCGCCGATGGCCC---CCTTCAA-AAATCTTGAACCCAACCGTGA----------CGCCTAAATT-GAT--TTATTG-TATAATGTACAAAAAA-CAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTTCCGTGAGTCATCGAA-TCTTTGAA-CGCACATTGCGCCCTTTGGTATTCCGAAGG-GCATGCCTGTTCGAGCGTCATTATCCCCCCTC-AAACCTCGGGTTT------GGTGTTGGACCGACGTTGGTCGTTACC----CCGACC--AACTGGTCTCAAAGACAATGACGG-CGTCCGTGGG-ACCCTCGATACACCGAGCTTTCTTTTCGAAGCACGT-ACCGAGT---TGCAAGGACCCACG--CCCGCCGGTCGCTCT---------C-CCCTTCTCGGA-GA Phaeocryptopus_gaeumannii AAGAGTAAGGGTTATT-CGTA-----GCCCGACC--T-CCAA-CCTTTGTTGTTATAACTAC--CTCGTTGCTTTGGCGGGACCGCTCGGTC-T-----------------------CGAGCTG------CTGGT----------CTTCG--GC-CCGGCAAGTGC---CCGCCAGAGT-CT-----ACTCA-AACTCTTGTTTT-AACC-GGT----------CGTCTGAGT-TAAA--CTTTT-----------AATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAAATCTTTGAAACGCACATTGCGCTCCCTGGTATTCCGGGGGAGCATGCCTGTTCGAGCGTCATTA-CACCACTC--AAGCACTG-CTT------GGTATTAGGCC----ATCGTCCCCCGA----AAGGTG--GGCGTGCCTCAAACACCTCGGCGG-AACCTCACCG-GCTTTGGGCGTAATAAAATTTC---TC-AACGTCTT-ATAAGTACC-GGTTCTGACTCCTTTGCCGTTAAACCCCA--------------AACTTTTAAA-GG Rhinocladiella_atrovirens CCGAGTTAGGGTCCTCATC-----GGGCCCGACC--TCCCAACCCATTGTTTATGATACCT---AGTGTTGCTTCGGTAGGCCTGG-TCTATCTGTTATA---------------GACCTGCCG--GGGGGCCGT---------AAGACGCCGG-CCGGAGAGTGC---CTACCGACAGCCTCAAC-TCCAA-AATTCTTTAACCAAACG-TGTCT-------TTGTCTGAGTAAC-G--TCTTTT---------AAAATAAAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCTCGTGAGTCATCGAA-TCTTTGAA-CGCACATTGCGCCCTTTGGTATTCCGAAGG-GCATGCCTGTTCGAGCGTCATTTTCACCCCTCAAGCCCCCGG-CTT------GGTGTTGGACGGTCTGGTCCGGGGACCTCAAACCCCCTGGACCCCTCCCAAAGACAATGACGGCGGGCTGTTGA-ACCCCCGGTACACTGAGCATC-TTCACGGAGCACGT-ACCGGTC---TCAAGGGTCGACGGCACCCGGTCT-ATACCT---------ATATTTTT--CAA-GG Saccharomyces_cerevisiae GCGCTTAAGTGCGCGGTCTTGCT-AGGCTTGTAA-GTTTCTTTCCTATTCCAACGGTGAGAGATTTCTGTGCTTTTGTTATAGGACTTAAAACCGTTTCAATACAACACACTGTGGAGTTTTCATA--TCTTTG-CAACTTTTTCTTTGGGCATTCGAGCAATCGGG----GCCAGAGGTAACAAACACAAACAATTTTATTTATATTAAATTTTT---------GTCAAAAACAAGAATTTTCGTAATGAAATTTAAAATATTAAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATT-CCGTGAATCATCGAA-TCTTTGAA-CGCACATTG--CCCCTTGGTATTCCAGGGG-GCATGC-TGTTTGAGCGTCATTTCCTTCTCAAACA--TTCTG-TTT------GGTAGTGAGTGATACTCTTTG--GAGTTAACTTGAAATTGCTGGCCTTTTCA-----TTG--GATGTTTTTTT-----TT-TCCAAAGAGAGGTTTCTCT-GCGTGCTTGAGGTATAATGCAAGTACGGTCGTTTT--AGGTTTTACCAACTGC----GGCTAATCTTTTTTATACTG Torulaspora_delbrueckii GCGCTTAATTGCGCGGTTCTCC----GCCGGG---GCTTCTGT---ATTC--ACTGT-------TTCTCTGTCTGCGGTTCACTGCCTAAAA--------ATTATACACACACTGGAGTTTTCTTT--TAAAACACTTCTTCTTCTTTGGGCT-T---GCAA--GAG----CCCGGAGTTGACAAACACAAACAATTTTGTT-ATATTATAATCAA---------GTCAAAACCAA----TTTCGTTATGAAATACAAATAATTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATT-CCGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCTTGGTATTCCAGGGG-GCATGCCTGTTTGAGCGTCATTTCCTTCTCAAAGAACTCTTC-TTT------GGTAGTGAGTGACACTCTTTCTAGAGTTAACTTGAAATTGCTAGCCATATAA-----TAGCTGTTGATTGCTGA---CTT-TGGACGGAGCGATTTGTCCAGTCTGCTG-----ATACCG-----ATTGTCGTATT--AGGTTTTACCAACTTC----GACGGA-CGTAGTGTTAGTG Trimmatostroma_cordae CCGAGTTAGGGTCTCCTCCGT--GAGGCCCGACC--TCCCAACCCTGTGTCTAACAAACCTGTTTGTGTTGCTTCGGCGGAACGGCAGTGACCTATTAGCCCCCCCTTCACCGGCGTCC-GTCGCCGGGGGACTTACGGTCTCACGACCGCCCC--TGGAGAGCGT---CCGCCGATGGCCCCAACCAAAAC-AACTACCAAACCCAAAT-TGTGAACAAAAAACTTCTGAATCAGAT--CTTT-GATATACCAATCAAAAA--CAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTTCCGTGAGTCATCGAA-TCTTTGAA-CGCACATTGCGCCCTTTGGCATTCCGAAGG-GCATGCCTGTCCGAGCGTCATTATCCTCCCTCAAACCCCCGGGTTT------GGTGTTGGACCGCGTTGGCCC-TTA-A----CCGGCC--AACTGGTCTCAAAGACAATGACGG-CGTCCCCGGG-ACCCTCTTTGCACTGAGCTTT----TCGGAGCACGC-AGGGAGT---TTCAAGGGCCCAGGGACCCGGTCGCCTCTAA---------A-CTATTTTTC-A-GG Xylaria_hypoxylon ------AAGAGTTTTGA------------TAAACTCCCA-AACCCA-TGTGAA-CTTACCTT---CTGTTGCCTCGGCAGGTCGCGTCTACCCTGTGG-----------------G-CACCTACCCTGTA---GG----------ACCCGACCTGGTGGTCGCGGT--CATGCCTGCCGGTGGCCCTTT--A-AACTTTCTGTGTATTCTATGTTAT---------TCTGAGTTGGCA--ACTA-----------AAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCATTAGTATTCTAGTGG-GCATGCCTGTTCGAGCGTCATTT-CAACCCTTA-AGCCCCTGTCGC----TTAGTGTTGGGAGCCTACAGTCTTCTGTA---------------GCTCCCTAAAGTTAGTGGCGG-AGTCGGT-TTGTACTCTAG-ACGTAGTAGATT-------CTA-TCTC-GTCTATAGTTAAGCCGGTCTCTTG--CCGTAAAACCCCCT-------------AATTTCTCAA-GG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'ITS1 5.8s ITS2 with P4-4') = N: 1-635; CODONPOSSET CodonPositions (CHARACTERS = 'ITS1 5.8s ITS2 with P4-4') = N: 1-635; END;