#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 14:04 GMT

TreeBASE (cc) 1994-2008

Study reference:
Hedin M. 2001. Molecular Insights into Species Phylogeny, Biogeography, and Morphological
Stasis in the Ancient Spider Genus Hypochilus (Araneae: Hypochilidae).
Molecular Phylogenetics and Evolution, 18(1): 238-251.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S716]

BEGIN TAXA;
        TITLE  GTR___I;
        DIMENSIONS NTAX=10;
        TAXLABELS
            Hypochilus_bernardino
            Hypochilus_bonnetti
            Hypochilus_gertschi
            Hypochilus_jemez
            Hypochilus_kastoni
            Hypochilus_petrunkevitchi
            Hypochilus_pococki
            Hypochilus_sheari
            Hypochilus_thorelli
            Sphodros_abbotti
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2280]

	TITLE 28S;
	LINK TAXA = GTR___I;
	DIMENSIONS NCHAR=809;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                     10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800         ]
[                                      .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         ]
Hypochilus_bernardino         GGCCCTCGAAATCCTGTGGTGGGGGGATTCAGTCAGGAGGGGCGGAGGTGTCCGCCGGCCAACCTCGATGGACCC--TTTACGGGCCGGGCCGGTGGCAC-TGTCTCTGTTCCGCCTGACGCATTTCCTCCCGCACGAAGGACGCCGCAGCCGGTTGGGTAGCTGCGCGTGTCGGCCTTAAGGACGGGCACCGGAAGGTGACCGGTGGCGATGCTTC------GGCTTCGTCGCCGGTTGTTATCCAGCCCGCCCGTGGCGCGACACCCGACCGAGG--TTTGTAAGGTCCCTT--CC----GGGACCTC------------GCCGTCCCCTCCCAC-TTGGTAG--TGGGCGATCCGGCAAGCATATCGCGGCGCC-----GTCACGCCACTCTTCGTAGTGGTCGACGCGCCGAG-GTTGCCGTTGGTTTCGGATCTCGTCCCACGGGGGTGTTCTGGCGGCTAGCGGCGAGTAGGTCGGTCACCCACCCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCACGGGGTCTTGAATAGGCCGCAGAGGCGCAATGAAAGTGAAGGTCGACCTCGACGTCGACTGTGTTGGGA--CTCTCCGCCC---CCTCCGGGCGGGGAAGCACCAACGACCCGTCCTATCCGAT--TTATCGGTTGGGCGGAGTCTGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTTCTGACGTGCAAATCGATCGTCAGACCCGGGTATAG
Hypochilus_bonnetti           GGCCCTCGAAATCCTGTGGCGGGGGGATTCAGTCAGGAGGGGCGGAGGTGTCCGCCGGCCAACCTCGATGGACCC--TTTACGGGCCGGGCCGGTGGCAC-TGTCTCTGTTTCGCCTGACGCATTTCCTCCCGCACGAAGGACGCCGCAGCCGGTTGGGTAGCTGCGCGTGTCGGCCTTAAGGACGGGCACCGGAAGGTGACCGGTGGCGTTGCTTC------GGCTTCGTCGCCGGTTGTTATCCAGCCCGCCCGTGGCGCGACACCCGACCGAGG--TTTGTAAGGTCCCCT--CT----GGGACCTC------------GCCGTCCCCTCCCAC-TAGGTAG--TGGGCGATCCGGCAAGCACATCGCGGTGCC-----GTCACGCCACTCTTCGTAGTGGTCGGCGCGCCGAG-ATTGCCGTTGGTTTCGGATCTCGTCCCACGGGGGTGTTCTGGCGGCTAGCGGCGAGTAGGTCGGTCACCCACCCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCACGGGGTCTTGAATAGGCCGCAGAGGCGCAATGAAAGTGAAGGTCGACCTCGACGTCGACTGTGTTGGGA--CTCTCCGCCC---TTCCCGGGCGGGGAAGCACCAACGACCCGTCCTATCCGAT--TTATCGGTTGGGCGGAGTCTGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTTCTGACGTGCAAATCGATCGTCAGACCCGGGTATAG
Hypochilus_gertschi           GGCCCTCGAAATCCTGTGGCGGGGGGATTCAGTCAGGAGGGGCGGAGGTGT-CGCCGGCCATCCTCGATGGACCC--TTTACGGGCCGGTCCGGTGGCAC-TGTCTCTGTTCCGCCTGACGCATTTCCTCCCGCACGAAGGACGCCGCAGCCGGTTGGGTAGCTGCGCGTGTCGGCCTTAAGGACGGGCGCCGGAAGGTGACCGGTGGCGTCGCTTC------GGCTTCGTCGCCGGTTGTTATCCAGCCCGCCCGTGGCGCGACACCCGACCGAGG--TTTGTAAGGTCCCTTTTCC----GGGACCTC------------GCCGTCCCCTCCCGC-TCGGAAG--TGGGCGATCCGGCAAGCACATCGCGGCGCC-----GTCACGCCACTCTTCGCAGTGGTCGACGCGCCGAG-GTTGCCGTTGGTTTCGGATCTCGTCCCACGGGGGTGTTCTGGCGGCTAGCGGCGAGTAGGTCGGTCACCCACCCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCACGGGGTCTTGAATAGGCCGCAGAGGCGCAATGAAAGTGAAGGTCGACCTCGACGTCGACTGTGTTGGGA--CTCTCCGCCC---CCTCCGGGCGGGGAAGCACCAACGACCCGTCCTATCCGAT--TTATCGGTTGGGCGGAGTCTGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTTCTGACGTGCAAATCGATCGTCAGACCCGGGTATAG
Hypochilus_jemez              GGCCCTCGAAATCCTGTGGCGGGGGGATTCAGTCAGGAGGGGCGGAGGTGTCCGCCGGCCAACCTCGATGGACCC--TTTACGGGCCGGGCCGGTGGCAC-TGTCTCTGTTTCGCCTGACGCATTTCCTCCCGCACGAAGGACGCCGCAGCCGGTTGGGTAGCTGCGCGTGTCGGCCTTAAGGACGGGCACCGGAAGGTGACCGGTGGCGTTGCCTC------GGCTTCGTCGCCGGTTGTTATCCAGCCCGCCCGTGGCGCGACACCCGACCGAGG--TTTGTAAGGTCCCCT--CT----GGGACCTC------------GCCGTCCCCTCCCAC-TAGGTAG--TGGGCGATCCGGCAAGCACATCGCGGTGCC-----GTCACGCCACTCTTCGTAGTGGTCGGCGCGCCGAG-ATTGCCGTTGGTTTCGGATCTCGTCCCACGGGGGTGTTCTGGCGGCTAGCGGCGAGTAGGTCGGTCACCCACCCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCACGGGGTCTTGAATAGGCCGCAGAGGCGCAATGAAAGTGAAGGTCGACCTCGACGTCGACTGTGTTGGGA--CTCTCCGCCC---TTCCCGGGCGGGGAAGCACCAACGACCCGTCCTATCCGAT--TTATCGGTTGGGCGGAGTCTGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTTCTGACGTGCAAATCGATCGTCAGACCCGGGTATAG
Hypochilus_kastoni            GGCCCTCGAAATCCTGTGGCGGGGGGATTCAGTCAGGAGGGGCGGAGGTGTCCGCCGGCCAACCTCGATGGACCC--TTTACGGGCCGGGCCGGTGGCAC-GGTCTCTGTTCCGCCTGACGCATTTCCTCCCGCACGAAGGACGCCGCAGCCGGTTGGGTAGCTGCGCGTGTCGGCCTTAAGGACGGGCACCGGAAGGTGACCGGTGGCGTTGCTTC------GGCTTCGTCGCCGGTTGTTATCCAGCCCGCCCGTGGCGCGACACCCGACCGAGG--TTTGTAAGGTCCCTT--CC----GGGACCTC------------GCCGTCCCCTCCCAT-TTGGTAG--TGGGCGATCCGGCAAGCATATCGCGGCGCC-----GTCACGCCACTCTTCGTAGTGGTCGACGCGCCGAG-GTTGCCGTTGGTTTCGGATCTCGTCCCACGGGGGTGTTCTGGCGGCTAGCGGCGAGTAGGTCGGTCACCCACCCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCACGGGGTCTTGAATAGGCCGCAGAGGCGCAATGAAAGTGAAGGTCGACCTCGACGTCGACTGTGTTGGGA--CTCTCCGCCC---CCTCCGGGTGGGGAAGCACCAACGACCCGTCCTATCCGAT--TTATCGGTTGGGCGGAGTCTGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTTCTGACGTGCAAATCGATCGTCAGACCCGGGTATAG
Hypochilus_petrunkevitchi     GGCCCTCGAAATCCTGTGGCGGGGGGATTCAGTCAGGAGGGGCGGAGGTGTCCGCCGGCCAACCTCGATGGACCC--TTTACGGGCCGGGCCGGTGGCAC-GGTCTCTGTTCCGCCTGACGCATTTCCTCCCGCACGAAGGACGCCGCAGCCGGTTGGGTAGCTGCGCGTGTCGGCCTTAAGGACGGGCACCGGAAGGTGACCGGTGGCGATGCTTC------GGCTTCGTCGCCGGTTGTTATCCAGCCCGCCCGTGGCGCGACACCCGACCGAGG--TTTGTAAGGTCCCTT--CC----GGGACCTC------------GCCGTCCCCTCCCAC-TTGGTAG--TGGGCGATCCGGCAAGCATATCGCGGCGCC-----GTCACGCCACTCTTCGTAGTGGTCGACGCGCCGAG-GTTGCCGTTGGTTTCGGATCTCGTCCCACGGGGGTGTTCTGGCGGCTAGCGGCGAGTAGGTCGGTCACCCACCCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCACGGGGTCTTGAATAGGCCGCAGAGGCGCAATGAAAGTGAAGGTCGACCTCGACGTCGACTGTGTTGGGA--CTCTCCGCCC---CCTCCGGGTGGGGAAGCACCAACGACCCGTCCTATCCGAT--TTATCGGTTGGGCGGAGTCTGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTTCTGACGTGCAAATCGATCGTCAGACCCGGGTATAG
Hypochilus_pococki            GGCCCTCGAAATCCTGTGGCGGGGGGATTCAGTCAGGAGGGGCGGAGGTGT-CGCCGGCCATCCTCGATGGACCC--TTTACGGGCCGGTCCGGTGGCAC-TGTCTCTGTTCCGCCTGACGCATTTCCTCCCGCACGAAGGACGCCGCAGCCGGTTGGGTAGCTGCGCGTGTCGGCCTTAAGGACGGGCAACGGAAGGTGACCGGTGGCGTCGCTTC------GGCTTCGTCGCCGGTTGTTATCCAGCCCGCCCGTGGCGCGACACCCGACCGAGG--TTTGTAAGGTCCCTTCTCC----GGGACCTC------------GCCGTCCCCTCCCGATTCGGAAG--TGGGCGATCCGGCAAGCACATCGCGGCGCC-----GTCACGCCACTCTTCGCAGTGGTCGACGCGCCGAG-GTTGCCGTTGGTTTCGGATCTCGTCCCACGGGGGTGTTCTGGCGGCTAGCGGCGAGTAGGTCGGTCACCCACCCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCACGGGGTCTTGAATAGGCCGCAGAGGCGCAATGAAAGTGAAGGTCGACCTCGACGTCGACTGTGTTGGGA--CTCTCCGCCC---CCTCCGGGCGGGGAAGCACCAACGACCCGTCCTGTCCGAT--TTATCGGTTGGGCGGAGTCTGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTTCTGACGTGCAAATCGATCGTCAGACCCGGGTATAG
Hypochilus_sheari             GGCCCTCGAAATCCTGTGGCGGGGGGATTCAGTCAGGAGGGGCGGAGGTGT-CGCCGGCCATCCTCGATGGACCC--TTTACGGGCCGGTCCGGTGGCAC-TGTCTCTGTTCCGCCTGACGCATTTCCTCCCGCACGAAGGACGCCGCAGCCGGTTGGGTAGCTGCGCGTGTCGGCCTTAAGGACGGGCAACGGAAGGTGACCGGTGGCGTAGCTTC------GGCTTCGTCGCCGGTTGTTATCCAGCCCGCCCGTGGCGCGACACCCGACCGAGG--TTTGTAAGGTCCCTT-TCC----GGGACCTC------------GCCGTCCCCTCCCGC-TCGGAAG--TGGGCGATCCGGCAAGCACATCGCGGCGCC-----GTCACGCCACTCTTCGTAGTGGTCGACGCGCCGAG-GTTGCCGTTGGTTTCGGATCTCGTCCCACGGGGGTGTTCTGGCGGCTAGCGGCGAGTAGGTCGGTCACCCACCCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCACGGGGTCTTGAATAGGCCGCAGAGGCGCAATGAAAGTGAAGGTCGACCTCGACGTCGACTGTGTTGGGA--CTCTCCGCCC---CCTCCGGGCGGGGAAGCACCAACGACCCGTCCTATCCGAT--TTATCGGTTGGGCGGAGTCTGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTTCTGACGTGCAAATCGATCGTCAGACCCGGGTATAG
Hypochilus_thorelli           GGCCCTCGAAATCCTGTGGCGGGGGGATTCAGTCAGGAGGGGCGGAGGTGT-CGCCGGCCATCCTCGATGGACCC--TTTACGGGCCGGTCCGGTGGCAC-TGTCTCTGTTCCGCCTGACGCATTTCCTCCCGCACGAAGGACGCCGCAGCCGGTTGGGTAGCTGCGCGTGTCGGCCTTAAGGACGGGCAACGGAAGGTGACCGGTGGCGTCGCTTC------GGCTTCGTCGCCGGTTGTTATCCAGCCCGCCCGTGGCGCGACACCCGACCGAGG--TTTGTAAGGTCCCTT-TCC----GGGACCTC------------GCCGTCCCCTCCCGCTTCGGAAG--TGGGCGATCCGGCAAGCACATCGCGGCGCC-----GTCACGCCACTCTTCGTAGTGGTCGACGCGCCGAG-GTTGCCGTTGGTTTCGGATCTCGTCCCACGGGGGTGTTCTGGCGGCTAGCGGCGAGTAGGTCGGTCACCCACCCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCACGGGGTCTTGAATAGGCCGCAGAGGCGCAATGAAAGTGAAGGTCGACCTCGACGTCGACTGTGTTGGGA--CTCTCCGCCC---ACTCCGGGCGGGGAAGCACCAACGACCCGTCCTATCCGAT--TTATCGGTTGGGCGGAGTCTGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTTCTGACGTGCAAATCGATCGTCAGACCCGGGTATAG
Sphodros_abbotti              GGCCCTCGAAATCCTCCTGCCGGGGGATTCAGTCACGACGTTTCGAGGTGCTCGTCGG--ATTGTTATCGGACCTCGTATAAAGGCCGATCCGACGGCACGTGTCTCGATTCGACGTGACGCATTTCCCCCGGCACTACGGACGCCGCAGCCGGTCGGGTAGCTGCGCGTGTCGGCCTTGAGGACGGACGCCGGAAGGTGGCCGGCGGGACTCTCTGTAAAAAGGGAGGCCTGCCGGTTGTTAGCCTGTCCGTCCGTGGCGCGACACCCGACCGAGGAGTTCTTCGGTTCCTCTCTCCGGAGGGGACCGATATAGAGAGAGAGCCTTCCCCTCCCTTCTCGTAAGGCTGAGCGAGTCGGCCGACAGGTGTCAGTGCGCGTGGGTCGTCGCAGTCTCCGCACTGGGCGATCCGCACTGCGCCGCTGTTGGTT-CGGACCG-GCTTCGCGGGGGACTAGAGAAGGCTGGCGGCGAGTAGGTCGGTCACCCACCCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATGGGGTCTTGTTCAGGCC-CAAAGGCGCAATGAAAGTGAAAGCCGGCCTTG--GCCGGCCCAGTTGGGATCCTCTCCTCTTGGAATGTCGGAGGGAGGCGCACCAACGACCCGCCCTGTGCTATATTCGTAGCGTGGACGGAGTATGAGCGCACACGTTGGGACCCGAAAGATGGTGAACTATGCTTGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGATCGTCAGACTTGAGTATAG
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = 28S) = 
		N: 1-809;
CODONPOSSET  CodonPositions (CHARACTERS = 28S) = 
		N: 1-809;
END;