#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=24; TAXLABELS Muscodor_albus_AF324336 Muscodor_sp._16AMLWLS_KC481680 'Muscodor sp. A3-5 AY034665' Muscodor_vitigenus_AY100022 Muscodor_albus_TP21_AY527045 Muscodor_albus_KN27_AY527046 Muscodor_albus_GP206_AY527048 Trichoderma_harzianum_CBS_226.95_AY605713 Muscodor_albus_AY927993 Muscodor_crispans_EU195297 fungal_endophyte_EU686979 fungal_endophyte_EU687035 fungal_endophyte_sp._P1813B_EU977197 fungal_endophyte_sp._P912B_EU977236 fungal_sp._ARIZ_B342_FJ612989 'Muscodor sp. WG-2009a FJ664551' Muscodor_yucatanensis_FJ917287 'fungal sp. ZH S13-1-2 GQ220337' Muscodor_cinnanomi_GQ848369 Muscodor_fengyangensis_ZJLQ151_HM034852 Muscodor_fengyangensis_ZJLQ070_HM034853 Muscodor_fengyangensis_ZJLQ023_MO34856 'Muscodor sutura SR-2011 JF938595' 'Muscodor sp. AB-2011 JN426991' ; END; BEGIN CHARACTERS; TITLE Muscodor_16; DIMENSIONS NCHAR=1239; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Muscodor_albus_AF324336 TGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTTTCCAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTATAGGGGA-TACCACATAGTGGTTACCCTGTAGTCCCAGG-------TGCTAGATCGTGCTCAACGTCTTATCGTCTACGA----CTAGCTAC------------CCGG-TGGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTT-TATGGCATTCT-----GAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CACTGCCCGTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAG-GCGTAGTAAATCTATC--TCGCCTCTGTAGTGGTTCCGGCCCC-TGCC-GTAAAACCCCC--TATATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCCGGGAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Muscodor_sp._16AMLWLS_KC481680 --------------------------------------------------------------------------------------------------------CTCGG----GGAGG--CTACCCTATAGGGGA-TACCACATAGTGGTTACCCTGTAGTCCCAGG-------TGCTAGATCGTGCTCAACGTCTTATCGTCTACGA----CTAGCTAC------------CCGG-TGGC---CCTCGAGGCCGGCGGCCAACTAAACTCTG--TTTT-TATGGCATTCT-----GAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CACTGCCCGTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAG-GCGTAGTAAATCTATC--TCGCCTCTGTAGTGGTTCCGGCCCC-------------------------------TGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Muscodor sp. A3-5 AY034665' TGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTATAGGGGA-TACCACATAGTGGTTACCCTGTAGTCCCAGA-------TGCTAGATCGTGCTCAACGTCTTATCGTCTACGA----CTAGCTAC------------CCGG-TGGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTT-TATGGCATTCT-----GAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTT-ACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CACTGCCCGTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAG-GCGTAGTAAATCTATC--TCGCCTCTGTAGTGGTTCCGGCCCC-TGCC-GTAAAACCCCC--TATATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCCGGAGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Muscodor_vitigenus_AY100022 --------------------------CCGTAGGTGAACCTGCGGAGGGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTGCGGGAGAATACCACTTAGTGGTTACCCTGTAGTTTCAGG-------TAC------------------------------A----TCAGCTAC------------CCGG-TAGT---CATCCCCGCCGGCGGCCAACTAAACTCTG--TTTTCTTTGGAATTCT-----GAATAACAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCTTGTTGC----TTAGCGTTGGGAGCCTACGG---CACGGCCCGTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAA-GCGTAGTAATTATATC--TCGCTTCTGTAGTGGTCCCGGCCCC-TGCC-GTAAAACCCCT--TATA-CAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Muscodor_albus_TP21_AY527045 ------------------------TTCCGTAGGTGAACCTGCGGAGGGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTATAGGGGA-TACCACATACTGGTTACCCTGTAGTCCCAGG-------TGCTAGATCGTGCTCAACGTCTTATCGTCTACGA----CTAGCTAC------------CCGG-TGGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTT-TATGGCATTCT-----GAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGTCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CACTGCCCGTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAG-GCGTAGTAAATCTATC--TCGCCTCTGTAGTGGTTCCGGCCCC-TGCC-GTAAAACCCCC--TATATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Muscodor_albus_KN27_AY527046 ------------------------TTCCGTAGGTGAACCTGCGGAGGGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTATAAGGGA-TACCACATACTGGTTACCCTGTAGTCCCAGG-------TGCTAGATCGTGCTCAACGTCTTATCGTCTACGA----CTAGCTAC------------CCGG-TGGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTT-TATGGCATTCT-----GAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CACTGCCCGTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAG-GCGTAGTAAATCTATC--TCGCCTCTGTAGTGGTTCCGGCCCC-TGCC-GTAAAACCCCC--TATATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Muscodor_albus_GP206_AY527048 ------------------------TTCCGTAGGTGAACCTGCGGAGGGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTATAGGGGA-TACCACACACTGGTTACCCTGTAGTCCCAGG-------TGCTAGATCGTGCTCAACGTCTTATCGTCTACGA----CTAGCTAC------------CCGG-TGGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTT-TATGGCATTCT-----GAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CACTGCCCGTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAG-GCGTAGTAAATCTATC--TCGCCTCTGTAGTGGTTCCGGCCCC-TGCC-GTAAAACCCCC--TATATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_harzianum_CBS_226.95_AY605713 -------------------------------------------------------------TTTACAACTCCCAAACCCAATGTGAACGTTACCAAACTGTTGCCTCGGCG-----GGATCTCTGCCCCGGG----TGC------GTCGCAGCCCCGGA--CCAAGG-------CGCCCGC--------------------CGGRRGACCAACCTAAAAC------------TCTTATTGTATACCCCCTCGCGGGTTTTTTTTTATAATCTGAGCCTTCTCGGCGCCTCTCGTAGGCGTTTCGAA---AATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAARAACGCAGCGAAATGCGATAAGTAATGTGAATTGCARAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGCCCTCCCTTAGCGGGTGGCCGTCTCCGAAATACAGKGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCMCACTCGCATCGGGAGCGCGGCGCGTCCACAGCC-GTTAAACACCCAACTTCTGAAATGTTGACCYCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAYARAAAKWCCAAMCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Muscodor_albus_AY927993 ---------------ACTAGTGATTTCCGTAGGTGAACCTGCGGAGGGATCATTACAGAGTTTTCCAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTATAGGGGA-TACCACATAGTGGTTACCCTGTAGTCCCAGG-------TGCTAGATCGTGCTCAACGTCTTATCGTCTACGA----CTAGCTAC------------CCGG-TGGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTT-TATGGCATTCT-----GAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CACTGCCCGTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAG-GCGTAGTAAATCTATC--TCGCCTCTGTAGTGGTTCCGGCCCC-TGCC-GTAAAACCCCC--TATATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Muscodor_crispans_EU195297 -----------------------------------------------------------------------CCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTATAGGGGA-TACCACATAGTGGTTACCCTGTAGTCCCAGG-------TGCTAGATCGTGCTCAACGTCTTATCGTCTACGA----CTAGCTAC------------CCGG-TGGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTT-TATGGCATTCT-----GAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CACTGCCCGTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAG-GCGTAGTAAATCTATC--TCGCCTCTGTAGTGGTTCCGGCCCC-TGCC-GTAAAACCCCC--TATATCAAAGGTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- fungal_endophyte_EU686979 ----------------------------------------------GGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTGCGGGAGAATACCACTTAGTGGTTACCCTGTAGTTTCAGG-------TAC------------------------------A----TCAGCTAC------------CCGG-TAGT---CATCCCCGCCGGCGGCCAACTAAACTCTG--TTTTCTTTGGAATTCT-----GAATAACAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCTTGTTGC----TTAGCGTTGGGAGCCTACGG---CACGGCCCGTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAA-GCGTAGTAATTATATC--TCGCTTCTGTAGTGGTCCCGGCCCC-TGCC-GTAAAACCCCT--TATA-CAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCTAGGGCCCGAGTTGTAATTTGCAGAGGATGATTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTACGGTTGGACACCAAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCATTTACTACCAGACCTTCTCCCTGCGGATCATGCGGTGTTTTCACCGCTGCACTTCGCTTGGTTTAGGCTAGCATCGGTTTTCGTAGGGGGATAAAAGCATTAGGAACGTAGCTCCCTCGGGAGTGTTATAGCCTTTTGCATAATACCCTTATGGGGACCGAGGACCGCGCT fungal_endophyte_EU687035 ----------------------------------------------GGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTGCGGGGGATTACCACCTAGTGGTTACCCTGCAGTCTCAGG-------TAC------------------------------A----TCTGTTAC------------CCGG-TAGT---CATCCCCGCCGGCGGCCAACTAAACTCTG--TTTTCTTTGGAATTCT-----GAATCATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CATAGCCCGTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAA-GCGTAGTAACTATATC--TCGCTTCTGTAGTAGTTCCGGCCCC-TGCC-GTAAAACCCCT--TATA-CAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCTAGGGCCCGAGTTGTAATTTGCAGAGGATGATTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTACGGTTGGACACCAAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCATTTACTACCAGACCTTCTCCCTGCGGATCATGCGGTGTTCTCACCGCTGCACTTCGCTTGGTTTAGGCCAGCATCGGTTTTCGTAGAGGGATAAAAGCTTTAGGAACGTAGCTCCCTCGGGAGTGTTATAGCCTTTTGCATAATACCTTTACGGGGACCGAGGACCGCGCT fungal_endophyte_sp._P1813B_EU977197 --------------------------------------------AGGGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTGCGGGAGAATACCACTTAGTGGTTACCCTGTAGTTTCAGG-------TAC------------------------------A----TCAGCTAC------------CCGG-TAGT---CATCCCCGCCGGCGGCCAACTAAACTCTG--TTTTCTTTGGAATTCT-----GAATAACAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCTTGTTGC----TTAGCGTTGGGAGCCTACGG---CACGGCCCGTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAA-GCGTAGTAATTATATC--TCGCTTCTGTAGTGGTCCCGGCCCC-TGCC-GTAAAACCCCT--TATA-CAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- fungal_endophyte_sp._P912B_EU977236 -------------------------------------CCTGCGGAGGGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTATAGGGGA-TACCACATAGTGGTTACCCTGTAGTCCCAGG-------TGCTAGATCGTGCTCAACGTCTTATCGTCTACGA----CTAGCTAC------------CCGG-TGGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTT-TATGGCATTCT-----GAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CACTGCCCGTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAG-GCGTAGTAAATCTATC--TCGCCTCTGTAGTGGTTCCGGCCCC-TGCC-GTAAAACCCCC--TATATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- fungal_sp._ARIZ_B342_FJ612989 TGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTGCGGGAGAATACCACTTAGTGGTTACCCTGTAGTTTCAGG-------TAC------------------------------A----TCAGCTAC------------CCGG-TAGT---CATCCCCGCCGGCGGCCAACTAAACTCTG--TTTTCTTTGGAATTCT-----GAATAACAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCTTGTTGC----TTAGCGTTGGGAGCCTACGG---CACGGCCCGTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAA-GCGTAGTAATTATATC--TCGCTTCTGTAGTGGTCCCGGCCCC-TGCC-GTAAAACCCCT--TATA-CAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Muscodor sp. WG-2009a FJ664551' -------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTGCGGGGGATTACCACCTAGTGGTTACCCTGCAGTCTCAGG-------TAC------------------------------A----TCTGTTAC------------CCGG-TAGT---CATCCCCGCCGGCGGCCAACTAAACTCTG--TTTTCTTTGGAATTCT-----GAATCATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CATAGCCCGTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAA-GCGTAGTAACTATATC--TCGCTTCTGTAGTAGTTCCGGCCCC-TGCC-GTAAAACCCCT--TATA-CAAAAGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Muscodor_yucatanensis_FJ917287 ------GTAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTGCGGGGGATTACCACCTAGTGGTTACCCTGCAGTCTCAGG-------TAC------------------------------A----TCTGTTAC------------CCGG-TAGT---CATCCCCGCCGGCGGCCAACTAAACTCTG--TTTTCTTTGGAATTCT-----GAATCATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CATAGCCCGTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAA-GCGTAGTAACTATATC--TCGCTTCTGTAGTAGTTCCGGCCCC-TGCC-GTAAAACCCCT--TATA-CAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'fungal sp. ZH S13-1-2 GQ220337' ----------------------------------------------------------------CTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTATAGGGGA-TACCACATAGTGGTTACCCTGTAGTCCCAGG-------TGCTAGATCGTGCTCAACGTCTTATCGTCTACGA----CTAGCTAC------------CCGG-TGGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTT-TATGGCATTCT-----GAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CACTGCCCGTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAG-GCGTAGTAAATCTATC--TCGCCTCTGTAGTGGTTCCGGCCCC-TGCC-GTAAAACCCCC--TATATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAAAGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Muscodor_cinnanomi_GQ848369 --------AAAATCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTATAGGGGA-TACCACATAGTGGTTACCCTGTAGTCCCAGG-------TGCTAGATCGTGCTCAACGTCTTATCGTCTACGA----CTAGCTAC------------CCGG-TGGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTT-TATGGCATTCT-----GAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CACTGCCCGTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAG-GCGTAGTAAATCTATC--TCGCCTCTGTAGTGGTTCCGGCCCCCTGCCCGTAAAACCCCCC-TATATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Muscodor_fengyangensis_ZJLQ151_HM034852 -------------------------------------------------------CAGAGTTTTCAAAACTCCCAACCCTTTGTGAAC-CTACCA--TCGTTGCTTCGGCGGCGGAGGTGCTACGCTGCAAGG---CGCTACCCTGTAGTTACCCTGTAGTCCCAGGGAGCTGTCATCAGCTCTTTAGGGGAGCCCACAGCCTGGCGACGTTTTCGTTACAGGGCTGTAGCTCCGGACTGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTTCTTTGGAACTCT-----GAATCATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGGGCCTACGG---CACAGCCTGTAGC--CCCTTAAAGTG-ATTGGCGGAGTTGGTTCTATCTCTAA-GCGTAGTAATTTCTTC--TCGCTTCTGCAGTAGTGCTGGCCCC-CGCC-GTAAAACCCTCC-TATA-CAATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Muscodor_fengyangensis_ZJLQ070_HM034853 -------------------------------------------------------CAGAGTTTTATAAACTCCCAACCCTTTGTGAAC-CTACCA--TCGTTGCTTCGGCGGCGGAGGTGCTACGCTGCAAGG---CGCTACCCTGTAGTTACCCTGTAGTCCCAGGGAGCTGTCATCAGCTCTTTAGGGGAGCCCACAGCCTAGCGACGTTTTCGTTACAGGGCTGTAGCTCCGGACTGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTTCTTTGGAACTCT-----GAATCATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGGGCCTACGG---CACAGCCTGTAGC--CCCTTAAAGTG-ATTGGCGGAGTTGGTTCTATCTCTAA-GCGTAGTAATTTCTTC--TCGCTTCTGCAGTAGTGCTGGCCCC-CGCC-GTAAAACCCTCC-TATA-CAATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Muscodor_fengyangensis_ZJLQ023_MO34856 -------------------------------------------------------CAGAGTTTTCTAAACTCCCAACCCTTTGTGAAC-CTACCA--TCGTTGCTTCGGCGGCGGAGGTGCTACGCTGCAAGG---CGCTACCCTGTAGTTACCCTGTAGTCCCAGGGAGCTGTCATCAGCTCTTTAGGGGAGCTCACAGCCTAGCGATGTTTTCGTTACAGGGCTGTAGCTCCGGACTGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTTCTCTGAAACTCT-----GAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGGGCCTACGG---CACAGCCTGTAGC--CCTTTAAAGTG-ATTGGCGGAGTTAGTTCTATCTCTAA-GCGTAGTAATTTCTTC--TCGCTTCTGCAGTAGTGCTGGCCCC-CGCC-GTAAAACCCTCC-TATA-CAATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Muscodor sutura SR-2011 JF938595' --------------------------------------------------------AGAGTTTTCTAA-CTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTGCGGGAGAATACCACTTAGTGGTTACCCTGTAGTTTCAGG-------TAC------------------------------A----TCAGCTAC------------CCGG-TAGT---CATCCCCGCCGGCGGCCAACTAAACTCTG--TTTTCTTTGGAATTCT-----GAATAACAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCTTGTTGC----TTAGCGTTGGGAGCCTACGG---CACGGCCCGTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAA-GCGTAGTAATTATATC--TCGCTTCTGTAGTGGTCCCGGCCCC-TGCC-GTAAAACCCCT--TATA-CAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Muscodor sp. AB-2011 JN426991' ------------------------TTCCGTAGGTGAACCTGCGGAGGGATCATTACAGAGTTTTCTAAACTCCCAACCCTATGTGAAC-TTACCT--TTGTTGCTTCGGCGGCGGAGG--CTACCCTATAGGGGA-TACCACATAGTGGTTACCCTGTAGTCCCAGG-------TGCTAGATCGTGCTCAACGTCTTATCGTCTACGA----CTAGCTAC------------CCGG-TGGC---CCTCCCCGCCGGCGGCCAACTAAACTCTG--TTTT-TATGGCATTCT-----GAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGG---CACTGCCCGTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGTTCTCACTCTAG-GCGTAGTAAATCTATC--TCGCCTCTGTAGTGGTTCCGGCCCC-TGCC-GTAAAACCCCC--TATATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN TREES; Title Muscodor_16; LINK Taxa = Taxa; TRANSLATE 1 Muscodor_albus_AF324336, 2 Muscodor_sp._16AMLWLS_KC481680, 3 'Muscodor sp. A3-5 AY034665', 4 Muscodor_vitigenus_AY100022, 5 Muscodor_albus_TP21_AY527045, 6 Muscodor_albus_KN27_AY527046, 7 Muscodor_albus_GP206_AY527048, 8 Trichoderma_harzianum_CBS_226.95_AY605713, 9 Muscodor_albus_AY927993, 10 Muscodor_crispans_EU195297, 11 fungal_endophyte_EU686979, 12 fungal_endophyte_EU687035, 13 fungal_endophyte_sp._P1813B_EU977197, 14 fungal_endophyte_sp._P912B_EU977236, 15 fungal_sp._ARIZ_B342_FJ612989, 16 'Muscodor sp. WG-2009a FJ664551', 17 Muscodor_yucatanensis_FJ917287, 18 'fungal sp. ZH S13-1-2 GQ220337', 19 Muscodor_cinnanomi_GQ848369, 20 Muscodor_fengyangensis_ZJLQ151_HM034852, 21 Muscodor_fengyangensis_ZJLQ070_HM034853, 22 Muscodor_fengyangensis_ZJLQ023_MO34856, 23 'Muscodor sutura SR-2011 JF938595', 24 'Muscodor sp. AB-2011 JN426991'; TREE tree1 = (8:0.180017465,((22:0.01013266,(20:0.0,21:0.0):0.0022749):0.03944419,(((12:0.0,(16:0.0,17:0.0):0.0):0.01605098,(4:0.0,(11:0.0,(13:0.0,(15:0.0,23:0.0):0.0):0.0):0.0):0.01420711):0.01491883,(2:0.00938337,(24:-5.277E-5,(19:-3.016E-5,(18:-1.759E-5,(14:-1.055E-5,(10:-6.6E-6,((3:0.00245777,9:-5.58E-6):3.34E-6,(1:-5.04E-6,(6:0.0024077,(5:0.00250169,7:-4.95E-5):5.174E-5):0.00245722):1.21E-6):4.33E-6):6.6E-6):1.055E-5):1.759E-5):3.016E-5):4.45E-4):0.03037432):0.01960896):0.180017465); END;