#NEXUS [written Wed Jul 24 16:57:35 GMT+00:00 2013 by Mesquite version 2.75 (build 566) at Macintosh-6.local/192.168.5.142] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=23; TAXLABELS Teratosphaeria_proteae_arboreae_EU707884_ Teratosphaeria_wingfieldii_EU707896_ Teratosphaeria_maxii_DQ885899_ Teratosphaeria_macowanii_AY260096_ Teratosphaeria_macowanii_EU707895_ Teratosphaeria_stellenboschiana_GQ852825_ Teratosphaeria_complicata_GQ852790_ Teratosphaeria_miniata_GQ852803_ Teratosphaeria_considenianae_GQ852792_ Teratosphaeria_nubilosa_GQ852819_ Teratosphaeria_cryptica_GQ852799_ Teratosphaeria_alistairii_DQ885901_ Teratosphaeria_eucalypti_GQ852801_ F253_ Teratosphaeria_parva_EU707874_ Teratosphaeria_encephalarti_FJ372401_ Devriesia_strelitziae_EU436763_ F199_ Teratosphaeria_persoonii_EU707880_ Teratosphaeria_altensteinii_FJ372394_ Teratosphaeria_bellula_EU707859_ Teratosphaeria_suberosa_GQ852836_ Devriesia_hilliana_GU214633_ ; END; BEGIN CHARACTERS; TITLE TeratosphaeriaMB; DIMENSIONS NCHAR=597; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Teratosphaeria_proteae_arboreae_EU707884_ AGGGATCATTACCGAGT-GA---GGGCG--C-----GAGCCCGACCT-CCAACCCCAT-GTTTTCC---GAAC-CA-CGTTGCCTCGGGGG---------CG-ACCCG--G-CCCT---GGCGCC---------GGGGCCCCCGGTGGAC--ATC-ACCC-CAACACTGCATC-GTTG-CGTCTGAG--TACAA-A-CA-TGTAAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGA-GGGCATGCCTGTCCGAGCGTCATTACG-CCGCTCCAGCTCCGCTGGGTATTGGGCG--CCG-CGG--------CC-T-CCG----CGCGCCTCAATGTCTCC---GGCCGA-GCCGACCG--TC-TCCGAAGCGTTGTGA-CAT-CAC-GAAC-CGCCAAGT--GG-G-ATC--GGT-GC-GGCGC-CGC-GCCG-CTAAA----CCC-TTTCACC--AAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_wingfieldii_EU707896_ AGGGATCATTACCGAGT-GA---GGGCG--C-----GAGCCCGACCT-CCAACCCTAT-GTTCTCC---ACAC-CA-CGTTGCCTCGGGGG---------CG-ACCCG--G-CCCT---CGCGCC---------GGGGCCCCCGGTGGAC--ACC-AAGC-AAACACTGCATC-TTTG-CGTCTGAG--TACAC-A----TATAAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGA-GGGCATGCCTGTTCGAGCGTCATTACA-CCACTCCAGCCCCGCTGGGTATTGGGCG--CCG-CGG--------CC-T-CCG----CGCGCCTTAATGTCTCC---GGCCGA-GCCGACCG--TC-TCCGAAGCGTTGTGA-CAC-CAC-GAAC-CGCTGAGT--GG-G-ACC--GGT-CC-GGCGC-CGC-GCCG-TTAAA----CCC-TTTCACC--AAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_maxii_DQ885899_ AGGGATCATTACCGAGT-GA---GGGCG--C-----GAGCCCGACCT-CCAACCCCAT-GTTTTCC---AAAC-CA-CGTTGCCTCGGGGG---------CG-ACCCG--G-CCCC---CGCGCC---------GGGGCCCCCGGTGGAC--ACC-AACC-GAACACTGCATC-TTTG-CGTCTGAG--TACAC-A----TATAAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGA-GGGCATGCCTGTTCGAGCGTCATTACA-CTACTCCAGCCCCGCTGGGTATTGGGCG--CCG-CGG--------CC-T-CCG----CGCGCCTTAATGTCTCC---GGCCGA-GCCGACCG--TC-TCCGAAGCGTTGTGA-CAT-CAC-GAAC-CGCTAAGT--GG-G-ACC--GGT-CC-GGCGC-CGC-GCCG-TTAAA----CCC-TT-CACC--AAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_macowanii_AY260096_ AGGGATCATTACCGAGT-AA---GGGCG--C-----GAGCCCGACCT-CCAACCCCAT-GTTCTCC---AAAC-CA-CGTTGCCTCGGGGG---------CG-ACCCG--G-CCCT---CGCGCC---------GGGGCCCCCGGTGGAC--ACC-AACC-AAACACTGCATC-TTTG-CGTCTGAG--TACAC-A----TATAAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGA-GGGCATGCCTGTTCGAGCGTCATTACA-CCACTCCAGCCCCGCTGGGTATTGGGCG--CCG-CGG--------CC-T-CCG----CGCGCCTTAATGTCTCC---GGCCGA-GCCGACCG--TC-TCCGAAGCGTTGTGA-CAT-CAC-GAAC-CGCTGAGT--GG-G-ACC--GGT-CC-GGCGC-CGC-GCCG-TTAAA----CCC-TTTCACCA-AAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_macowanii_EU707895_ AGGGATCATTACCGAGT-AA---GGGCG--C-----GAGCCCGACCT-CCAACCCCAT-GTTCTCC---AAAC-CA-CGTTGCCTCGGGGG---------CG-ACCCG--G-CCCT---CGCGCC---------GGGGCCCCCGGTGGAC-AACC-AACC-AAACACTGCATC-TTTG-CGTCTGAG--TACAC-A----TATAAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGA-GGGCATGCCTGTTCGAGCGTCATTACA-CCACTCCAGCCCCGCTGGGTATTGGGCG--CCG-CGG--------CC-T-CCG----CGCGCCTTAATGTCTCC---GGCCGA-GCCGACCG--TC-TCCGAAGCGTTGTGA-CAT-CAC-GAAC-CGCTGAGT--GG-G-ACC--GGT-CC-GGCGC-CGC-GCCG-TTAAA----CCC-TTTCACCA-AAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_stellenboschiana_GQ852825_ AGGGATCATTACTGAGC-GA---GGGCG--C-----GAGCCCGACCT-CCAACCCCAT-GTTTTC-----AAC-CA-TGTTGCCTCGGGGG---------CG-ACCCG--G-CCAC---CGCGCC---------GGGGCCCCCGGCGGAC---CCC--TC--AACTCTGCATC-TCTG-CGTCTGAG--T-CAC-A-AAATA-AAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGA-GGGCATGCCTGTTCGAGCGTCATTACA-CCACTCCAGCCTCGCTGGGTATTGGGCG--CCG-CGG--------CC-T-CCG----CGCGCCTTAATGTCTCC---GGCCGA-GCCGACCG--TC-TCT-AAGCGTTGTGG-CAC-AACTGTTT-CGCTT--T-CGG-G-ACC--GGT-C-TGGCGA-CGC-GCCG-TTAAA----CCC-TTTCACC--AAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_complicata_GQ852790_ AGGGATCATTACTGAGT-GA---GGGCG--C-----GAGCCCGACCT-CCAACCCCAT-GTTT-CC---AAAC-CA-TGTTGCCTCGGGGG---------CG-ACCCG--G-CCGT---GGCGCC---------GGGGCCCCCGGTGGAC---CCC--TC--AACACTGCATC-TTTG-CGTCTGAG--TG-AT--GAA-TATAAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGG-GGGCATGCCTGTTCGAGCGTCATTACA-CCACTCCAGCCCCGCTGGGTATTGGGCG--CCG-CGG--------CC-T-CCG----CGCGCCTCAACGTCTCC---GGCCGA-GCCGACCG--TC-TCT-AAGCGTTGTGG-CAC-AACTGTTT-CGCTT--T-CGG-G-ACC--GGT-C-TGGCGG-CGC-GCCG-TTAAA----CCC-TTTCTC---AAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_miniata_GQ852803_ AGGGATCATTACTGAGT-GA---GGGCG--C-----AAGCCCGACCT-CCAACCCCAT-GTTT-CC---AAAC-CA-TGTTGCCTCGGGGG---------CG-ACCCG--G-CCAC---CGCGCC---------GGGGCCCCCGGTGGAC---CCC--TC--AACTCTGCATC-TTTG-CGTCTGAG--TA-AC-A-AAAT--AAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGA-GGGCATGCCTGTTCGAGCGTCATTACA-CCACTCAAGCCTCGCTTGGTATTGGGCG-TC-G-CGG--------CC-T-CCG----CGCGCCTCAATGTCTCC---GGCCGA-GCCGACCG--TC-TCC-AAGCGTTGTGG-CAC-AACTGTTT-CGCTT---CCGA-G-ACC--GGT-CC-GGTGA-CGC-GCCG-TTAAA----CCC-TTTCTCC--AAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_considenianae_GQ852792_ AGGGATCATTACTGAGT-GA---GGGCG--C-----AAGCCCGACCT-CCAACCCCAT-GTTT-CC---AAAC-CA-TGTTGCCTCGGGGG---------CG-ACCCG--G-CCAC---CGCGCC---------GGGGCCCCCGGTGGAC---CCC--TC--AACTCTGCATC-TTTG-CGTCTGAG--TACAT--GAA-T-TAAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGA-GGGCATGCCTGTTCGAGCGTCATTACA-CCACTCCAGCCTCGCTGGGTATTGGGCG--CCG-CGG--------CC-T-CCG----CGCGCCTCAATGTCTCC---GGCCGA-GCCGACCG--TC-TCT-AAGCGTTGTGG-CAC-AACTGTTT-CGCTT--T-CGG-G-ACC--GGT-CC-GGCGA-CGC-GCCG-TTAAA----CCC-TTTCTCC--AAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_nubilosa_GQ852819_ AGGGATCATTACTGAGT-GC---GGGCG--C-----CAGCCCGACCT-CCAACCCCAT-GTTTTCC----CAC-CA-CGTTGCCTCGGGGG---------CG-ACCCG--G-CCCC---CGCGCC---------GGGGCCCTCGCAGGAC---CCC--TC--AACGCTGCATC-TGTG-CGTCGGAG--TA-AT-A-CAAC--CAATC-AATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGA-GGGCATGCCTGTTCGAGCGTCATTTCA-CCACTCCAGCCCCGCTGGGTCTTGGGCG--CCG-CGG--------CC-T-CCG----CGCGCCTCAATGTCTCC---GGCCGA-GCCGACCG--TC-TCT-CAGCGTTGTGG-CAC-TACTGTTT-CGCTGA--CGGG-G-ACC--GGT-C-TGGCGG-CGC-GCCG-TTAAA----CCC-TTTCACC--AAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_cryptica_GQ852799_ AGGGATCATTACCGAGT-GA---GGGCG--C-----CCGCCCGACCT-CCAACCCCAT-GTTTTCC----AAC-CA-TGTTGCCTCGGGGG---------CG-ACCCG--G-CCGC---CGTGCC---------GGGGCCCCCGGCGGAC---CCC--TC--AACTCTGCATC-TTTG-CGTCTGAG--TG-AT-AAC-GAA-AAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGA-GGGCATGCCTGTTCGAGCGTCATTACA-CCCCTCCGGCCTCGCTGGGTGTTGGGCA-TC-G-CGG--------CC-T-CCG----CGCGCCTCAATGTCTCC---GGCCGA-GCCGACCG--TC-TCT-AAGCGTTGTGG-CAC-AACTGTTT-CGCTT---CCGG-G-ACC--GGT-CC-GGCGT-CGC-GCCG-TCAA---CCCCC-TCTCTC---ACAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_alistairii_DQ885901_ AGGGATCATTACCGAGT-GA---GGGC---CTC---TGGCCCGACCT-CCAACCC-TTTGTGATTA---CCAC-TC-TGTTGCCTCGGGGG---------CG-ACCCG--G-CCTT-CGGGCGTC---------GGGGCCCCCGGTGGAC---ACC--TC--AACTCTGCATC-TATG-CGTCTGAG--TAC-C--GA--T-TAAATCAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGG-GGGCATGCCTGTTCGAGCGTCATTACA-CCACTCAAGCCTCGCTTGGTATTGGGCG--CCG-CGG--------CC-TCCCG----CGCGCCCCAATGTCTTC---GGCTGG-CCTCATCG--GG-TCCCTCGCGCTGTGA-TTT-AAC-CATT-CGC---GTGCGGC--CCCG-GGA-GGTG-CGA-C---GCCG-TTAAA--CCCCC-ATT------AAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_eucalypti_GQ852801_ AGGGATCATTATCGAGC-GA---GGGCG--C-----CAGCCCGACCTCCCAACCCCCT-GCCT-CC---CCAC-CA-CGTTGCCTCGGGGG---------CG-ACCCG--G-CCGC---CGCGCC---------GGCGCCCCCGGCGGCC---CCC--TC--AACTCTGCATC-TTTG-CGTCTGAG--TG-ATGTGAC----AAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGG-GGGCATGCCTGTTCGAGCGTCATTACA-CCACTCCAGCCTCGCTGGGTCTTGGGCG--CCG-CGG--------CC-C-CCG----CGCGCCCTAATGTCTCC---GGCCGA-GCCGACCG--TC-TCTC-AGCGTTGTGG-CAC-CACTGTCT-CGCTGA---CGG-G-ACC--GGT-CC-GGCGG-CGC-GCCG-TCAAA---CCCC-TCC------AAAGGTTGACCTCGGATCAGGTAGGGATACC F253_ AGGGATCATTACC-AGA-GATGGCGGG--CCTCCGCGCCCCCGTCC--CCAACCC-TTTGTTGACC--GAGAC-CT-TTTTGCCTCGGGGG--------CAG-AG-CG--G-CCGC-CACGGGC----------GCCGCCCCCGGAGGAC--CACC-----AAACGCTGCCTC-TGTA-CGTCGGAG--TC-TTTTGA--T-TAAATG-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCG-AGGGGCATGCCCGTTCGAGCGTCATTAAACCCACTCAAGCCTGGCTTGGTCTTGGGCG-TC-G-GGG-------GACCT-CC-TCCCCGCGCCTTCATTTCGCC---GGCTG--GCCGTC-GT-TCGAC-GTAGCGTTGTGA-CAC--A-TGT---CGCTAA---CGACG-AC----GA-CG----GACCGC-GCCGTGAGAA--CCCCC-TTGGA----------------------------------- Teratosphaeria_parva_EU707874_ AGGGATCATTACCGAGT-GA---GGGC---CTCC--GGGCTCGACCT-CCAACCCCATTGTATTCC----GACCTCTTGTTGCCTCGGGGG---------CG-ACCCG--G-CCTT-CGGGCGTC---------GGGGCCCCCGGTGGAC-----CA-TC-AAACTCTGCATC-TTTGACGTCTGAG--TAAAT-A----T-TGAATC-AATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCG-AGGGGCATGCCTGTTCGAGCGTCATTTCA-CCACTCAAGCCTGGCTTGGTATTGGGCG--CCG-CGG--------TT-TGCCG----CGCGCCTCAAAGTCTCC---GGCTGA-GCCAACTG--TC-TCT-AAGCGTTGTGG-TTT-AAT-CATC-CGCTT---GCGA-G-ATC---GA---AGGCGA-CG--GCCG-TTAAA-----CTCATTC-----AAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_encephalarti_FJ372401_ AGGGATCATTACCGAGT-GA---GGGC---CTTC--GGGCTCGACCT-CCAACCCCAT-GTTATCC----GAC-CA-TGTTGCCTCGGGGG---------TG-ACCCGGCG-CCTT-CGGGCGCCCC-------GGGGCCCCCGGCGGAC---CCC-TT---AACGCTGCATC-TTTG-CGTCCGAG--T-CAC--GA--T-TGAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGG-GGGCATGCCTGTTCGAGCGTCATTTCA-CCACTCAAGCCTCGCTTGGTATTGGGCGATCCG-CGG-----CCGTC-T-CCGGCCGCGCGCCCCTATGTCTTC---GGCCGA-GCCGCCCG--TC-TCTT-AGCGTTGTGG-TCT-ATCAGTT--CGCTT--TG-GA-G--CGCGGGT----GG-GTTCGCCGCCG-CTAAA---CCCTT-CTCA----CAAGGTTGACCTCGGATCAGGTAGGGATACC Devriesia_strelitziae_EU436763_ AGGGATCATTACCGAGT-GA--GGGTCG-CCCCCGCGCGCCCGACCTCCCAACCC-TTTGATGTGATCAAGACCTC-TTATGCCTCGGGGG---------TG-ACCCG--G-CCTT----GCGCCGC-------GGTCCCCCCGGTGGAC--ACC-AACCAAAACTCTGCATCAGTTGTCGTCTGAG----CAT-A-AAGT-TAATTC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCG-AGGGGCATGCCTGTTCGAGCGTCATTACA-CCAATCACGCCTGGCGTGGTATTGGGCG-AC-G--GGATTGCTTCAG-T-GTGTCC-CGCGCCCCAAAGACCTTACCGGCGGG-ACGGACCGAATC-TC---AGCGTTGTGAATCTTTAC-GAGT-CGCTGG---CGA-G-AC--GGGA-CG-GCCGT-----GCCG-TTAAA-CCCCCC-ATTTTCTT-C-TGGTTGACCTCGGATCAGGTAGGGATACC F199_ AAGGATCATTACCGAGT--AT--CGGAGCCCTC---GGGCTCCTACT-CCCACCCTAT-GTTGACC---TGA--TA-CGTTGCTTTGGCGGACCGGTTTACGCCGCCG--G-CCTGGGCTG-GATA--------GCGTCCGCCAGAGGA-------TTTC-AAACTCTCAAT--TGTGAATTCCGAG--TACCT-AGA-----AATTG-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCG-AGGGGCACGCCTGTTCGAGCGTCATTTAAA-CAATCAAGCCCTGCTTGGTATTGGACT------CGG------TC-G-A-GTGA---CCTGTCCGTAACCCGTT---GGC-GGTGCAGTCCG--GCTTC--AAGCGTAGC-A-G---AAT-CTTT-CGCTTC--GGGA-G-TCCGCGGC-GGTGCC-T-----GCCG-GAGAATCAACCC-A--GAGT--------------------------------- Teratosphaeria_persoonii_EU707880_ AGGGATCATTACTGAGT-GA---GGGC---CTCC--GGGCCCGACCT-CCAACCCCATTGTTTTCC----GAC-CC-AGTTGCCTCGGGGG---------TG-ACCCG--G-CCTT---CGGGCC---------AGGGCCCCCGGTGGAC---CCCAATC-AAACCCTGCATC-TCTG-CGTCTGAG--TG-ATTAGC-----GAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTACTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGG-GGGCATGCCTGTTCGAGCGTCATTACA-CCACTCAAGCCTGGCTTGGTATTGGGCG-TC-G-CGG-------GAG-A-CCG----CGCGCCTCAAAGTCACC---GGCTGG-ACCGTCCG--TC-TCC-AAGCGTTGTGG-C---AAC-TATC-CGC-GA--GCGA-G-ACCCGGG--CGACCCG------GCCG-TTAAA-CTTC---ATT------CAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_altensteinii_FJ372394_ AGGGATCATTACTGAGC-GA---GGGC---CTCC--GGGCTCGACCT-CCAACCCCATTGTTTTCC----GAC-CC-CGTTGCCTCGGGGG---------TG-ACCCG--G-CTTT---CGAGTC---------GGGGCCCCCGGTGGAC---CCCAACC-AAACACTGCATC-TCTG-CGTCTGAG--TG-ATTAGC-----GAATC-AATTAAAACTTTCAACAACGGATCTCTTGGTACTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGG-GGGCATGCCTGTTCGAGCGTCATTACA-CCACTCAAGCCTGGCTTGGTATTGGGTG-TC-G-CGG-------GAG-A-CCG----CGCGCCTCAAAGTCACC---GGCTGG-ACCGTCCG--TC-TCC-AAGCGTTGTGG-C---AAC-TATC-CGC-GA--GCGA-G-ACCCGGG--CGACCCG------GCCG-TTAAA---AC---TTTTTT--AC-AGGTTGACCTCGGATCAGGTAGGGAT--- Teratosphaeria_bellula_EU707859_ AGGGATCATTACTGAGT-GA---GGGC---CTCC--GGGCTCGACCT-CCAACCCCATTGTTTTCC----GAC-CC-TGTTGCCTCGGGGG---------TG-ACCCG--G-CTTT---CGAGTC---------GGGGCCCCCGGTGGAC---CCCAATC-AAACACTGCATC-TTTG-CGTCTGAG--TG-ATTAGC-----GAATC-AATTAAAACTTTCAACAACGGATCTCTTGGTACTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGG-GGGCATGCCTGTTCGAGCGTCATTACA-CCACTCAAGCCTGGCTTGGTATTGGGCG-TC-G-CGG-------GAG-A-CCG----CGCGCCTCAAAGTCACC---GGCTGG-ACCGTCCG--TC-TCC-AAGCGTTGTGG-C---AAC-TATC-CGC-GA--GCGA-G-ATT-GGG--CGACCCG------GCCG-TCAAA---AC---TTTCT----CAAGGTTGACCTCGGATCAGGTAGGGATACC Teratosphaeria_suberosa_GQ852836_ AGGGATCATTACCGAGT-GA--GCG-C---CTCC--GGGCGCGACCT-CCAACCCCAT-GTTATCC----AAC-CA-TGTTGCCTCGGGGG---------CG-ACCCG--G-CCGT--CCG-GCCG--------ATCGCCCCCGGTGGAC---CCC--TC--AACTCTGCATC-TTTG-CGTCGGAG--TCTAA-TGA--T--AAATC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCG-AGGGGCATGCCTGTTCGAGCGTCATTTCA-CCACTCAAGCCTCGCTTGGTATTGGGCG--CCG-CGG------TCCG---CCG----CGCGCCCCAATGTCTCC---GGCTCA-GCCCAACG--TCCTC-GAAGCGATTTGA-T---TAC-AATCCCGCT-A--GC-AGGCAC---GGA-GGGCGCGA-C---GCCG-CTAAA--CACCCCAT-CAC-----AGGTTGACCTCGGATCAGGTAGGGATACC Devriesia_hilliana_GU214633_ AGGGATCATTACCGAGTGGA---GGGCG--CTCCG-GCGCCCGACCTCCCAACCC-TTTGATTTGATCAAGACCTC-TTCTGCCTCGGGGG---------TG-ACCCG--GTCCT-CCCCGCGTGGGGCGACCCGGTCCTCCCGGTGGTCCAACCCAAC---AACTCTGCATCAATTGTCGTCGGATATTG-ATTA-A--TA-AATTC-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCG-AAGGGCATGCCTGTTCGAGCGTCATTACA-CCAATCAAGCCTGGCTTGGTATTGGGCG-AC-G-GGG-CCG-T-CAC-A-C-GCCC-CGCGCCCCAACGACCCCCC-GGCGGG-ACGGACCGAATC-TC---AGCGTTGTGC-----AAA-TAGT-CGCTG---GCGA-G-AC--GGGA--CGGCCGT-----GCCG-TGAAA---ACCTCTTTTATCTAC-AGGTTGACCTCGGATCAGGTAGGGATACC ; END; BEGIN TREES; Title TeratosphaeriaMB; LINK Taxa = Taxa; TRANSLATE 1 Teratosphaeria_proteae_arboreae_EU707884_, 2 Teratosphaeria_wingfieldii_EU707896_, 3 Teratosphaeria_maxii_DQ885899_, 4 Teratosphaeria_macowanii_AY260096_, 5 Teratosphaeria_macowanii_EU707895_, 6 Teratosphaeria_stellenboschiana_GQ852825_, 7 Teratosphaeria_complicata_GQ852790_, 8 Teratosphaeria_miniata_GQ852803_, 9 Teratosphaeria_considenianae_GQ852792_, 10 Teratosphaeria_nubilosa_GQ852819_, 11 Teratosphaeria_cryptica_GQ852799_, 12 Teratosphaeria_alistairii_DQ885901_, 13 Teratosphaeria_eucalypti_GQ852801_, 14 F253_, 15 Teratosphaeria_parva_EU707874_, 16 Teratosphaeria_encephalarti_FJ372401_, 17 Devriesia_strelitziae_EU436763_, 18 F199_, 19 Teratosphaeria_persoonii_EU707880_, 20 Teratosphaeria_altensteinii_FJ372394_, 21 Teratosphaeria_bellula_EU707859_, 22 Teratosphaeria_suberosa_GQ852836_, 23 Devriesia_hilliana_GU214633_; TREE con_50_majrule = (1:0.048533,3:0.008423,((2:0.011946,(4:0.002355,5:0.002385)0.98:0.005211)0.75:0.007285,((6:0.014093,(7:0.02221,(11:0.03546,13:0.072583)0.86:0.019727)0.51:0.010181,((8:0.008137,(12:0.104006,(14:0.129184,18:0.376786)0.99:0.111954,15:0.041368,16:0.08854,((17:0.055688,23:0.068909)1.00:0.098785,(19:0.014027,(20:0.015077,21:0.013195)1.00:0.020577)1.00:0.05306)0.83:0.034494,22:0.091395)1.00:0.047235)0.99:0.011513,9:0.003149)0.54:0.004841)0.90:0.017634,10:0.055826)1.00:0.035715)0.54:0.006651); TREE con_50_majrule = (1:0.048533,3:0.008423,((2:0.011946,(4:0.002355,5:0.002385):0.005211):0.007285,((6:0.014093,(7:0.02221,(11:0.03546,13:0.072583):0.019727):0.010181,((8:0.008137,(12:0.104006,(14:0.129184,18:0.376786):0.111954,15:0.041368,16:0.08854,((17:0.055688,23:0.068909):0.098785,(19:0.014027,(20:0.015077,21:0.013195):0.020577):0.05306):0.034494,22:0.091395):0.047235):0.011513,9:0.003149):0.004841):0.017634,10:0.055826):0.035715):0.006651); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 597; END; begin mrbayes; set autoclose = no nowarn = yes; lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 597; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 597; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1374685055145; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1628043445017413840; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8774742059976382298; mqVersion 275; checksumv 0 3 3105799865 null getNumChars 597 numChars 597 getNumTaxa 23 numTaxa 23 short true bits 15 states 15 sumSquaresStatesOnly 221042.0 sumSquares 221042.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 117; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1202 714; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1628043445017413840 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1628043445017413840; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1085 647; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1628043445017413840 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 2396.1306359915290.8464868071867328495; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1085 647; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 1; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((17:0.055688,23:0.068909)1.00:0.0493925,((19:0.014027,(20:0.015077,21:0.013195)1.00:0.020577)1.00:0.05306,(12:0.104006,15:0.041368,16:0.08854,22:0.091395,(14:0.129184,18:0.376786)0.99:0.111954,(8:0.008137,(9:0.003149,(6:0.014093,(7:0.02221,(11:0.03546,13:0.072583)0.86:0.019727)0.51:0.010181,(10:0.055826,((1:0.048533,3:0.008423):0.006651,(2:0.011946,(4:0.002355,5:0.002385)0.98:0.005211)0.75:0.007285)0.54:0.035715)1.00:0.017634)0.90:0.004841)0.54:0.011513)0.99:0.047235)1.00:0.034494)0.83:0.0493925);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8774742059976382298 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1085 647; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.chromaseq.ColorQuality.ColorQuality; tell It; toggleAmbiguities on; toggleMarks on; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;