#NEXUS [written Wed Jul 24 17:07:10 GMT+00:00 2013 by Mesquite version 2.75 (build 566) at Macintosh-6.local/192.168.5.142] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=38; TAXLABELS Hypoxylon_subgilvum_AB376693_ Hypoxylon_crocopeplum_AB376695_ Xylaria_cubensis_AB376701_ Xylaria_curta_AB376702_ Xylaria_laevis_AB376709_ Hypoxylon_haematostroma_AB376721_ Nemania_Cf_bipapillata_AB376770_ Whalleya_Aff_microplaca_AB376808_ Kretzschmaria_Cf_macrosperma_AB376810_ Xylaria_polymorpha_AB512362_ Neurospora_retispora_AJ579544_ Neurospora_tetrasperma_AJ579545_ Rosellinia_necatrix_AY083824_ Nemania_aenea_DQ840070_ Nemania_maritima_DQ840074_ Rosellinia_corticium_DQ840078_ Anthostomella_brabeji_EU552098_ Anthostomella_proteae_EU552101_ Rosellinia_necatrix_EU715607_ Biscogniauxia_atropunctata_EU715651_ F046 F072 F152 F160 F166 F276 F299 Biscogniauxia_mediterranea_GQ377490_ Biscogniauxia_nummularia_GQ428318_ F157 Xylaria_cubensis_GU048579_ Xylaria_curta_EU715623_ Xylaria_cubensis_AB376715_ Daldinia_eschscholzii_GU048583_ Xylaria_cubensis_AB376725_ Xylaria_cubensis_AB376683_ Nemania_serpens_DQ840075_ Nemania_chestersii_DQ840072_ ; END; BEGIN CHARACTERS; TITLE Xylariaceae2MB; DIMENSIONS NCHAR=545; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Hypoxylon_subgilvum_AB376693_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-GCGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGCGCCTTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CGCCTAGCCTATATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGAC-TTTTT-CCA-GGGGAATCATCCGGTG-TTC-TCACCGGTGCACTTCCCCTGGTT-TAGGCCAGC-GTCGG-TTCTCTTAGGGGGATAAAGGC-TTGGGG-AACGTAGCTCTTTC--GGGAGTGTTATAGCCCCT-CGC-GTAATACCCTTCGGGGGACCGAGGATCGCG Hypoxylon_crocopeplum_AB376695_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC-CTTC-G-GGTCCGAATTGTAATTTGCAGAGGATGCTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACTAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTACGGCCAGACCTTTT--CCT-AGCGGATCATCTAGTG-TTC-TCACTGGTGCACTTCGTTAGGTT-TAGGCCAGC-ATCGG-CTTCTGTAGAGGGATAAAAGC-AGTGGG-AAAGTAGCTCTCTC--GGGAGTGTTATAGCCC-TAAGC-ATAATACCTTTACGGGGGCCGAGGACCGCG Xylaria_cubensis_AB376701_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGCTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-AGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTC-TAGGCCAGC-ATCGG-TTTCTGTAGGGGGATAAAAGC-TCTGGG-AACGTAGCTCCTCC--GGGAGTGTTATAGCCC-TCTGC-ATAATACCCTTACGGGGACCGAGGACCGCG Xylaria_curta_AB376702_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCTCTGGAACGAGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-AGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTT-TAGGCCAGC-ATCGG-TTTCCGTAGGGGGATAAAAGC-TCTGGG-AACGTAGCTCCTCC--GGGAGTGTTATAGCCC-TCTGC-ATAATACCTTTACGGGGACCGAGGACCGCG Xylaria_laevis_AB376709_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC-TTC-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-AGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTT-TAGGCCAGC-ATCGG-TTTCTGTAGGGGGATAAAAGC-TCTGGG-AACGTAGCTCCTTC--GGGAGTGTTATAGACC-TCTGC-ATAATACCCTTACGGGGACCGAGGACCGCG Hypoxylon_haematostroma_AB376721_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-GCGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CGCCTAGCCTATATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGAC-TTTTT-CCA-GGGGAATCATCCGGTG-TTC-TCACCGGTGCACTTCCCCTGGTT-TAGGCCAGC-GTCGG-TTCTCTTAGGGGGATAAAGGC-TTGGGG-AACGTAGCTCTTTC--GGGAGTGTTATAGCCCCT-CGC-GTAATACCCTTCGGGGGACCGAGGATCGCG Nemania_Cf_bipapillata_AB376770_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGCCCGAGTTGTAATTTGTAGAGGACGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCCCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCT-CTCTCC--GGCGGATCATCCGGTG-TTCTTCACTGGTGCACTTCGCCGGGGCAGAGGCCAGC-ATCGG-TTTCCGCGGGGGGACAAAAGC-TCAGGG-AACGTAGCTCCTTC--GGGAGTGTTATAGCCC-TCTGC-ACAATGCCCCCGCGGGGACCGAGGACCGCG Whalleya_Aff_microplaca_AB376808_ AAACCAACAGGGATTGCC-TCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCAAGTTCCCTGGAACGGGAC-CCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CGCCTAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAACTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCT-CT-T-CTGGGCGGATCACCCGGTG-TTC-TCACCGGTGCACTTCGCCTAGTT-TAGGCCAGC-ATCGG-TTTTTATAGGGGGATAAAGGC--CTGGGGAACGTAGCTCCTTC--GGGAGTGTTATAGCCC-TTTGC-GTAATACCCTTATAGGGACCGAGGACCGCG Kretzschmaria_Cf_macrosperma_AB376810_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTGGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTAAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-GGCGGATCATCCGGTG-TTCTTCACCGGTGCACTTCGCCAGGTC-GAGGCCAGC-ATCGGTTTTCCGCAGGGGGATAAAAGC-T-TGGGGAACGTAGCTCCTCC--GGGAGTGTTATAGCCCCT-CGC-ACAATACCTTTGCGAGGACCGAGGACCGCG Xylaria_polymorpha_AB512362_ AAACCAACAGGGATTGCCC-CAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC-TTC-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCC-AGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTT-TAGGCCAGC-ATCGG-TCTCCGTAGGGGGATAAAAGC-CCTGGG-AACGTAGCTCCTTC--GGGAGTGTTATAGCCC-TCTGC-ATAATACCCTTACAGGGACCGAGGACCGCG Neurospora_retispora_AJ579544_ ---------------------------------TGAAGCGGCAACAGCTCAAATTTGAAATCTGGCT-T-C---GGCCCGAGTTGTAATTTGTAGAGGAAGCTTTTGGTGAGGCACCTTCTGAGTCCCCTGGAACGGGGCGCCATAGAGGGTGAGAGCCCCGTATA-GTCGGA-TGCCGATCCAATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGTGACCAGAC-TTGCGCCGT-T-CCGATCATCCGGTG-TTC-TCACCGGTGCACTCGGGACGGCA-CAGGCCAGC-ATCGG-TTTTGGCGGGGGGACAAAGGC-CCTGGG-AACGTAGCTCCTCC--GGGAGTGTTATAGCCC-AGGGCTGTAATGCCCTCGCCGGGACCGAGGTTCGCG Neurospora_tetrasperma_AJ579545_ ---------------------------------TGAAGCGGCAACAGCTCAAATTTGAAATCTGGCT-T-C---GGCCCGAGTTGTAATTTGTAGAGGAAGCTTTTGGTGAGGCACCTTCTGAGTCCCCTGGAACGGGGCGCCATAGAGGGTGAGAGCCCCGTATAGGTCGGA-TGCCGATCCAATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGTGACCAGAC-TTGCGCCGT-T-CCGATCATCCGGTG-TTC-TCACCGGTGCACTCGGGGCGGCT-CAGGCCAGCTATCGG-TTTTGGCGGGGGGATAAAGGT-CCGGGG-AACGTAGCTCCTTCCGGGTAGTGTTATAGCCC-CGGGC-GTAATGCCCTCGCCGGGACCGAGGTTCGCG Rosellinia_necatrix_AY083824_ AAACCAACAGGGATTGCC-TCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-GGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCCAGGTC-GAGGCCAGC-ATCGG-TTTCCGCGGGGGGATAAAAGC-TCTGGG-AACGTAGCTCCTTC--GGGAGTGTTATAGCCC-TCTGC-ACAATACCCCCGCGGGGACCGAGGACCGCG Nemania_aenea_DQ840070_ -----------------------------------------------------------ATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTCT--CCT-GGCGGATCATCCGGTGGT-CCCCACCGGTGCACTTCGCCAGGTC-GAGGCCAGC-ATCGG-TCTCTGCAGGGGGATAAAAGC-TCAGGG-AACGTAGCTCCTCC--GGGAGTGTTATAGCCC-TCCGC-ACAATACCCTTGCGGGGACCGAGGACCGCG Nemania_maritima_DQ840074_ --------------------------CGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCGTAGAGGGTGAGAGCCCCGTAC-GGTTGGC-AACTAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-GGCGGATCATCCGGTG-TTCTTCGCCGGTGCACTTCGCCAGGTC-GAGGCCAGC-ATCGG-TTTCTGTGGGGGGATAAAAGCCTG-GGG-AACGTAGCTCCTCC--GGGAGTGTTATAGCCCCT-CGC-ATAATACCCTCGCGGGGACCGAGGACCGCG Rosellinia_corticium_DQ840078_ ---------------GCCC-CAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCT-CGC-CCC-GGCGGATCATCCGGCG-TTC-TCGCCGGTGCACTCCGCCGGGCT-GAGGCCAGC-ATCGG-TTTCCGCGGGGGGACAAAAGC-GGGGGG-AACGTAGCTCCCTC--GGGAGTGTTATAGCCCC-CCGC-ATAATACCCTCGCGGGGACCGAGGACCGCG Anthostomella_brabeji_EU552098_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCTT--G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTACGACCAGACCTTTT--CCT-AGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTC-GAGGCCAGC-ATCGG-TTTCCGTAGGGGGATAAAAGC-T-TGGGGAACGTAGCTCCCTC--GGGAGTGTTATAGCCCCT-TGC-ATAATACCCTTACGGGGACCGAGGACCGCG Anthostomella_proteae_EU552101_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC-CTTCT--GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCATTTATTACCAGACCTTTT--CCT-AGCGGATCATGCGGTG-TTC-TCACCGTTGCACTTCGCTAGGTT-CAGGCCAAC-ATCGG-TTTCTGTAGGGGGATAAAAGC-TCGAGG-AACGTAGCTCCCTC--GGGAGTGTTATAGCCTCT-TGC-ATAATACCCTTACGGGGACCGAGGACCGCG Rosellinia_necatrix_EU715607_ ----CAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCCCCCG-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATGGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-GGCGGATCATCCGGTG-TTCTTCACCGGTGCACTTCGCCAGGTC-GAGGCCAGC-ATCGG-TTTCCACGGGGGGATAAAGGC-TCTGGG-AACGTAGCTCCCTC--GGGAGTGTTATAGCCC-TCTGC-ATAATACCCTCGCGGGGACCGAGGACCGCG Biscogniauxia_atropunctata_EU715651_ AAGCCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC-CTTC-G-GGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCCTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTACGGCCAGACCTTTT--CCT-GGCGGATCATCTGGTG-TTC-TCACCAGTGCACTTCGCCAGGTT-TAGGCCAGC-ATCGG-CTTCTGTAGGGGGATAAAAGC-AGTGGG-AAAGTAGCTCCCTC--GGGAGTGTTATAGCCC-TAAGC-ATAATACCCTTACGGGGGCCGAGGACCGCG F046 AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC-T-CCG-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGGACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCACCTTCGACGAGTCGAGTAGCTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-AGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTT-TAGGCCAGC-ATCGG-TTTCTGTAGGGGGATAAAAGC-TCTGGG-AACGTAGCTCCTCC--GGGAGAGTGATAGCCC-TCTGC-ATAATACCTTTACGGGGACCGAGGACCGCG F072 AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC-TT-AG-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGACCACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGCTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-GGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGTCAGGTT-TAGGCCAGC-ATCGG-TTTCTGTAGGGGGACAAAAGC-TCTGGG-AACGTAGCTCTTTT--GGGAGTGTTATAGCCC-TCTGC-ATAATACCCTTACGGGGACCGAGGACCGCG F152 AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAACCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCT-CT-TCCC-GGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCCGGGTC-GAGGCCAGC-ATCGG-TCTCTGTAGGGGGATAAAAGC-TCAGGG-AACGTAGCTCCTTC--GGGAGTGTTATAGCCC-TCTGC-ACAATGCCCTTACGGGGACCGAGGACCGCG F160 AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGCTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-AGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTT-TAGGCCAGC-ATCGG-TTTCCGTAGGGGGATAAAAGC-TCTGGG-AACGTGGCTCCTCC--GGGAGTGTTATAGCCC-TCTGC-ATAATACCTTTACGGGGACCGAGGACCGC- F166 AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTTAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-GGCGGATCATCCGGTG-TTCTTCACCGGTGCACTTCGCCAGGTC-GAGGCCAGC-ATCGG-TTTCCGCGGGGGGATAAAGGC-TCCGGG-AACGTAGCTCCTTC--GGGAGTGTTATAGCCC-TCTGC-ATAATACCCTCGCGGGGACCGAGGACCGCG F276 AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCT--AG-GGCCCGAGTTGTAATTTGCAGAGGATGATTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCATTTACTACCAGACCTTCTC-CCT--GCGGATCATGCGGTG-TT-TTCACCGCTGCACTTCGCTTGGTT-TAGGCTAGC-ATCGG-TTTTCGTAGGGGGATAAAAGC-ATTAGG-AACGTAGCTCCCTC--GGGAGAGTTATAGCCT-TTTGC-ATAATACCCTTATGGGGACCGAGGACCGCG F299 AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGCTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-AGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTT-TAGGCCAGC-ATCGG-TTTCCGTAGGGGGATAAAAGC-TCTGGG-AACGTGGCTCCTCC--GGGAGTGTTATAGCCC-TCTGC-ATAATACC-TTACGGGGACCGAGGACCGCG Biscogniauxia_mediterranea_GQ377490_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTACGGCCAGACCTTTT--CCT-GGCGGATCATCTGGTG-TTC-TCACCAGTGCACTCCGCCAGGTT-TAGGCCAGC-ATCGG-CTCCCGTAGGGGGATAAAAGC-AGTGGG-AAAGTAGCTCCCTC--GGGAGTGTTATAGCCC-GCTGC-ACAATACCCTTACAGGGGCCGAGGACCGCG Biscogniauxia_nummularia_GQ428318_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC-CTTC-G-GGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTACGGCCAGACCTTCT--CCT-GGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCCAGGTT-TAGGCCAGC-ATCGG-CTTCTGTAGGGGGATAAAAGC-AGTGGG-AAAGTAGCTCTCTC--GGGAGTGTTATAGCCC-TAAGC-ATAATACCTTTACGGGGGCCGAGGACCGCG F157 AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-AGTGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTT-TAGGCCAGC-ATCGG-TTTCTGTAGGGGGATAAAAGC-TCTGGG-AACGTAGCTCTTTC--GGGAGTGTTATAGCCC-TCTGC-ATAATACCCTTACGGGGACCGAGGACCGCG Xylaria_cubensis_GU048579_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-AGCGGATCAACCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTT-TAGGCCAGC-ATCGG-TTTCTGTAGGGGGATAAAAGC-TCTGGG-AACGTAGCTCCTCC--GGGAGTGTTATAGCCC-TCTGC-ATAATACCCTTACGGGGACCGAGGACCGCG Xylaria_curta_EU715623_ ----CAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-AGCGGATCAACCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTT-TAGGCCAGC-ATCGG-TTTCTGTAGGGGGATAAAAGC-TCTGGG-AACGTAGCTCCTCC--GGGAGTGTTATAGCCC-TCTGC-ATAATACCCTTACGGGGACCGAGGACCGCG Xylaria_cubensis_AB376715_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGCTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-AGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTC-TAGGCCAGC-ATCGG-TTTCTGTAGGGGGATAAAAGC-TCTGGG-AACGTAGCTCCTCC--GGGAGTGTTATAGCCC-TCTGC-ATAATACCCTTACGGGGACCGAGGACCGCG Daldinia_eschscholzii_GU048583_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT--AGCGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGAGGCGCCTTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CGCCAAACCTCTGTATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACTTTTT--CCA-GGCGGATCATCCGGCG-TTC-TCGCCGGTGCACTCCGCCTGGTT-GAGGCCAGC-ATCGG-TTTCCTTAGGGGGATAAAGGC--CTGGGGAACGTAGCTCCTTC--GGGAGTGTTATAGCCCCTG-GC-GTAATACCCCTCGGGGGACCGAGGAACGCG Xylaria_cubensis_AB376725_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGCTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-AGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTC-TAGGCCAGC-ATCGG-TTTCTGTAGGGGGATAAAAGC-TCTGGG-AACGTAGCTCCTCC--GGGAGTGTTATAGCCC-TCTGC-ATAATACCCTTACGGGGACCGAGGACCGCG Xylaria_cubensis_AB376683_ AAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-C-G-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGCTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-AGCGGATCATCCGGTG-TTC-TCACCGGTGCACTTCGCTAGGTC-TAGGCCAGC-ATCGG-TTTCTGTAGGGGGATAAAAGC-TCTGGG-AACGTAGCTCCTCC--GGGAGTGTTATAGCCC-TCTGC-ATAATACCCTTACGGGGACCGAGGACCGCG Nemania_serpens_DQ840075_ --------------------------------------------------------------------------------------------------------------CGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTACAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTCT--CCT-GGCGGATCATCCGGTGGTT-TCCACCGGTGCACTTCGCCAGGTC-GAGGCCAGC-ATCGG-TCTTTGTAGGGGGATAAAAGC-TCAGGG-AACGTAGCTCCTCC--GGGAGTGTTATAGCCC-TCCGC-ATAATACCCTTACGGGGACCGAGGACCGCG Nemania_chestersii_DQ840072_ -------------------------------------------------------------------------------------------GCAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAC-GGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTT--CCT-GGCGGATCATCCGGTGGT-CCCCACCGGTGCACTTCGCCAGGTC-GAGGCCAGC-ATCGG-TCTCTGCGGGGGGATAAAAGC-TCAGGG-AACGTAGCTCCTCC--GGGAGTGTTATAGCCC-TCTGC-ATAATACCCTCGCGGGGACCGAGGACCGCG ; END; BEGIN TREES; Title Xylariaceae2MB; LINK Taxa = Taxa; TRANSLATE 1 Hypoxylon_subgilvum_AB376693_, 2 Hypoxylon_crocopeplum_AB376695_, 3 Xylaria_cubensis_AB376701_, 4 Xylaria_curta_AB376702_, 5 Xylaria_laevis_AB376709_, 6 Hypoxylon_haematostroma_AB376721_, 7 Nemania_Cf_bipapillata_AB376770_, 8 Whalleya_Aff_microplaca_AB376808_, 9 Kretzschmaria_Cf_macrosperma_AB376810_, 10 Xylaria_polymorpha_AB512362_, 11 Neurospora_retispora_AJ579544_, 12 Neurospora_tetrasperma_AJ579545_, 13 Rosellinia_necatrix_AY083824_, 14 Nemania_aenea_DQ840070_, 15 Nemania_maritima_DQ840074_, 16 Rosellinia_corticium_DQ840078_, 17 Anthostomella_brabeji_EU552098_, 18 Anthostomella_proteae_EU552101_, 19 Rosellinia_necatrix_EU715607_, 20 Biscogniauxia_atropunctata_EU715651_, 21 F046, 22 F072, 23 F152, 24 F160, 25 F166, 26 F276, 27 F299, 28 Biscogniauxia_mediterranea_GQ377490_, 29 Biscogniauxia_nummularia_GQ428318_, 30 F157, 31 Xylaria_cubensis_GU048579_, 32 Xylaria_curta_EU715623_, 33 Xylaria_cubensis_AB376715_, 34 Daldinia_eschscholzii_GU048583_, 35 Xylaria_cubensis_AB376725_, 36 Xylaria_cubensis_AB376683_, 37 Nemania_serpens_DQ840075_, 38 Nemania_chestersii_DQ840072_; TREE con_50_majrule = (1:0.005078,6:0.006374,((((((((2:0.042144,29:0.015342)0.99:0.021219,20:0.014254)0.65:0.014994,28:0.033196)1.00:0.058034,17:0.013377,(18:0.022898,26:0.077418)1.00:0.037487)0.94:0.014883,((3:0.0039,21:0.02623,22:0.035891,(24:0.004306,27:0.003827)1.00:0.013838,33:0.007609,35:0.003852,36:0.003809)0.56:0.01089,4:0.018544,5:0.012139,(((7:0.048843,13:0.005095)0.84:0.010493,(15:0.04527,16:0.073435)0.89:0.021462,(19:0.02221,25:0.011838)0.84:0.00963)0.58:0.015638,9:0.037991,((14:0.007347,37:0.020909,38:0.015497)0.53:0.018543,23:0.035157)0.96:0.027346)0.97:0.030366,10:0.031609,30:0.011587,(31:0.003776,32:0.003836)0.99:0.00875)0.85:0.014647)0.98:0.044965,8:0.049329)0.70:0.029495,(11:0.019708,12:0.026768)1.00:0.382683)1.00:0.064012,34:0.05663)1.00:0.071867); TREE con_50_majrule = (1:0.005078,6:0.006374,((((((((2:0.042144,29:0.015342):0.021219,20:0.014254):0.014994,28:0.033196):0.058034,17:0.013377,(18:0.022898,26:0.077418):0.037487):0.014883,((3:0.0039,21:0.02623,22:0.035891,(24:0.004306,27:0.003827):0.013838,33:0.007609,35:0.003852,36:0.003809):0.01089,4:0.018544,5:0.012139,(((7:0.048843,13:0.005095):0.010493,(15:0.04527,16:0.073435):0.021462,(19:0.02221,25:0.011838):0.00963):0.015638,9:0.037991,((14:0.007347,37:0.020909,38:0.015497):0.018543,23:0.035157):0.027346):0.030366,10:0.031609,30:0.011587,(31:0.003776,32:0.003836):0.00875):0.014647):0.044965,8:0.049329):0.029495,(11:0.019708,12:0.026768):0.382683):0.064012,34:0.05663):0.071867); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 545; END; begin mrbayes; set autoclose = no nowarn = yes; lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 545; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 545; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1374685630604; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2682896223091985499; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2832919045473910766; mqVersion 275; checksumv 0 3 2509352495 null getNumChars 545 numChars 545 getNumTaxa 38 numTaxa 38 short true bits 15 states 15 sumSquaresStatesOnly 399635.0 sumSquares 399635.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 345; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 664 700; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2682896223091985499 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2682896223091985499; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 319 633; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2682896223091985499 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 865.1310124180758.6404369686728989946; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 319 633; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 1; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 2; setTree '((11:0.019708,12:0.026768):0.1913415,((34:0.05663,(1:0.005078,6:0.006374):0.071867):0.064012,(8:0.049329,((17:0.013377,(18:0.022898,26:0.077418):0.037487,(28:0.033196,(20:0.014254,(2:0.042144,29:0.015342):0.021219):0.014994):0.058034):0.014883,(4:0.018544,5:0.012139,10:0.031609,30:0.011587,(31:0.003776,32:0.003836):0.00875,(3:0.0039,21:0.02623,22:0.035891,33:0.007609,35:0.003852,36:0.003809,(24:0.004306,27:0.003827):0.013838):0.01089,(9:0.037991,(23:0.035157,(14:0.007347,37:0.020909,38:0.015497):0.018543):0.027346,((7:0.048843,13:0.005095):0.010493,(15:0.04527,16:0.073435):0.021462,(19:0.02221,25:0.011838):0.00963):0.015638):0.030366):0.014647):0.044965):0.029495):0.1913415);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2832919045473910766 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 319 633; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.chromaseq.ColorQuality.ColorQuality; tell It; toggleAmbiguities on; toggleMarks on; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;