#NEXUS [written Mon Jan 17 13:43:05 JST 2011 by Mesquite version 2.74 (build 550) at nonaka-kenichi-no-powerbook-g4-15.local/192.168.65.73] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=32; TAXLABELS 'Penicillium_viticola' 'Penicillium_angulare' 'Penicillium_brocae' 'Penicillium_adametzii' 'Penicillium_sclerotiorum' 'Penicillium_multicolor' 'Eupenicillium_hirayamae' 'Penicillium_thiersii' 'Penicillium_glabrum' 'Penicillium_purpurascens' 'Penicillium_thomii' 'Eupenicillium_pinetorum' 'Penicillium_spinulosum' 'Penicillium_lividum' 'Penicillium_astrolabium' 'Penicillium_jensenii' 'Penicillium_coffeae' 'Eupenicillium_idahoense' 'Penicillium_griseolum' 'Penicillium_chermesinum' 'Penicillium_indicum' 'Penicillium_charlesii' 'Penicillium_georgiense' 'Eupenicillium_cinnamopurpureum' 'Penicillium_parvulum' 'Penicillium_citreonigrum' 'Penicillium_restrictum' 'Penicillium_implicatum' 'Eupenicillium_ochrosalmoneum' 'Penicillium_decaturense' 'Aspergillus_nidulans' 'Aspergillus_oryzae' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=659; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX 'Penicillium_viticola' CAAGTCTCCGAGTACAAGGAGGCATTCTCCCTGTTTGTGAGTATTCTATT 'Penicillium_angulare' CAAGTCTCCGAGTACAAGGAGGCATTCTCCCTGTTTGTGAGTATTCTATT 'Penicillium_brocae' ------------------GAGGCATTCTCCCTGTTTGTGAGTACCATTTA 'Penicillium_adametzii' --AGTCTCCGAGTACAAGGAGGCATTCTCCCTGTTTGTGAGTTCCCTGTT 'Penicillium_sclerotiorum' CAAGTCTCTGAGTACAAGGAGGCATTCTCC-TCTTTGTA-GTACTCCCAC 'Penicillium_multicolor' CAAGTCTCCGAGTACAAGGAGGCATTCTCCCTCTTTGTAAGTGCTCCTAC 'Eupenicillium_hirayamae' CAAGTCTCTGAGTATAAGGAGGCCTTCTCCCTTTTCGTAAGTGTCCCGAC 'Penicillium_thiersii' ------------------GAGGCCTTCTCCTTGTTTGTGAGTAACCTGAT 'Penicillium_glabrum' --AGTTTCCGAGTACAAGGAGGCATTCTCCCTGTTTGTGAGTAACTTAAT 'Penicillium_purpurascens' --AGTTTCCGAGTACAAGGAGGCATTCTCCCTGTTTGTGAGTAACTTAAC 'Penicillium_thomii' --AGTTTCTGAGTACAAGGAGGCATTCTCCCTGTTTGTGAGTAACTATAT 'Eupenicillium_pinetorum' --AGTTTCCGAGTACAAGGAGGCATTCTCCCTGTTTGTGAGTAATTTAAT 'Penicillium_spinulosum' --AGTTTCTGAGTACAAGGAGGCCTTCTCCCTGTTTGTGAGTAACTTAAT 'Penicillium_lividum' --AGTCTCCGAGTACAAGGAGGCATTCTCCTTGTTTGTAAGTGTCCCAAT 'Penicillium_astrolabium' CAAGTGTCCGAATACAAGGAAGCCTTCTCCCTGTTTGTGAGTAACCCCA- 'Penicillium_jensenii' --------CGAGTACAAGGAGGCGTTCTCCTTGTTTGTAAGTGTTTCCAA 'Penicillium_coffeae' ------------------GAGGCGTTCTCCCTCTTTGTAAGTA------C 'Eupenicillium_idahoense' ------------------GAGGCCTTCTCTCTCTTTGTGAGTGTTTCATC 'Penicillium_griseolum' CAAGTCTCCGAGTACAAGGAGGCCTTCTCCTTGTTTGTGAGTGCCTCGAT 'Penicillium_chermesinum' ------------------GAGGCGTTCTCCCTCTTCGTAAGTGCTCCGAT 'Penicillium_indicum' ------------------GAGGCGTTCTCCCTCTTTGTAAGTGCTCCGAT 'Penicillium_charlesii' ------------------GAGGCGTTCTCCCTCTTCGTAAGTTGTCTGAT 'Penicillium_georgiense' CAAGTCTCTGAGTACAAGGAGGCCTTTTCCCTCTTTGTAAGTGGTCCGAT 'Eupenicillium_cinnamopurpureum' CAAGTCTCGGAGTACAAGGAGGCTTTCTCCCTTTTTGTGGGTGCTCCGTT 'Penicillium_parvulum' CAAGTCTCTGAGTACAAGGAGGCCTTCTCCCTTTTTGTGAGTGCTCCGTT 'Penicillium_citreonigrum' CAAGTCTCCGAGTACAAGGAGGCATTCTCCCTGTTTGTGAGTGACCGGAC 'Penicillium_restrictum' --AGTCTCCGAGTACAAGGAGGCCTTCTCCCTGTTTGTGAGTGACCCGAC 'Penicillium_implicatum' --AGTCTCCGAGTACAAGGAGGCATTCTCCCTGTTTGTAAGTGACCC-TG 'Eupenicillium_ochrosalmoneum' ------------------GAGGCCTTCTCCCTGTTTGTGAGTGAACCAAG 'Penicillium_decaturense' CAGGTCTCCGAGTACAAGGAGGCCTTCTCCCTCTTTGTGAGTTATCAATA 'Aspergillus_nidulans' --AGTTTCCGAGTACAAGGAGGCCTTCTCCCTATTTGTAAGT-------G 'Aspergillus_oryzae' --GGTCTCCGAGTACAAGGAGGCCTTCTCCCTATTCGTAAGTAGTTATCG 'Penicillium_viticola' CCGT-TGATTGTGAAAAGAAAAAAAAATGTTG----CCT-AGAAACCAA- 'Penicillium_angulare' CCGT-TGGTTGAGAAGAGAGTAAAAA-TGCTG----CCTTAAAAACCAA- 'Penicillium_brocae' CTAC-TGGCT-AGAA--AAATAAAA--CGTTG----CCT--AAAACCAA- 'Penicillium_adametzii' CTGT-CGATTG-----------AAGGATGCTG----CCT--AGAACCGAA 'Penicillium_sclerotiorum' GCGT-CGATTG-----------AACCCTCGTG----ACT---GGATTTAA 'Penicillium_multicolor' GCGT-CGATTGG----------AAGACTCGTG----ACT---GGATTTAA 'Eupenicillium_hirayamae' CTGT-CGATTG-----------AAGACCCATG----ACT---GGATTTA- 'Penicillium_thiersii' CTAT-TGATTC-----------AAGGTTATTG----GCT---TGGTTTAG 'Penicillium_glabrum' CCGC--GATTG-----------ACGACTGCTG----CCT---GGACCGGA 'Penicillium_purpurascens' CCGC--GATTG-----------ACGACTGCTG----CCT---GGACCAGA 'Penicillium_thomii' CCGC--GATTG-----------AAGATTGCTG----CCT---GATCCAGA 'Eupenicillium_pinetorum' CCGCGCGATTG-----------ACGACTGCTG----CCT---AAACCGAC 'Penicillium_spinulosum' CTGC--GATTG-----------AACACTGCTG----CCT---GAACCGGA 'Penicillium_lividum' ACGC--AATTC-----------CAGACTATTT----CCT---AAACTCAA 'Penicillium_astrolabium' CGTGCTGACTG-----------GGG-----------GATT--GGGATGCT 'Penicillium_jensenii' CCCGTGGATTG-----------AAGTTGTGAA----GGCT--GGACAACA 'Penicillium_coffeae' AGCGAGGATGA-----------TAAATCTC------GG----GAATACCC 'Eupenicillium_idahoense' ATCG-ACATTG-----------GTGAC-CTTG----GTCT--GGACAATT 'Penicillium_griseolum' CCCT-GGACTG-----------AAGACTGTTG----CCTG-GGAACGTA- 'Penicillium_chermesinum' CT-T--GATCG-----------CGGG-TTTTG-CTTGCCTTGCAACACTT 'Penicillium_indicum' CT-T--GATTG-----------CGTG-TCTTG-CTTGACTTGGAACGCTT 'Penicillium_charlesii' CT-T-TGATTG-----------CGGA-TTTTG-TTTGGCCTAGGGAAACG 'Penicillium_georgiense' --------TCG-----------TGGG-TTACG-TGCTCGGTGGAGGACAA 'Eupenicillium_cinnamopurpureum' CCAT-GGATTG-----------GTGA-TGTTGATGTGAGTTTGGGCGGTT 'Penicillium_parvulum' CCAT-GGATTG-----------GTGA-TGTTGACGTGAGTTTGGGCGGTT 'Penicillium_citreonigrum' CC----AATTG-----------AAGA-CGACGCC--GAG----GACGCAT 'Penicillium_restrictum' GC----AATTG-----------AAGA-CGATGAC--GGG----AACGCAT 'Penicillium_implicatum' ACATGGGATTG-----GGTCTGCCTA-CTGG------------GGAACAT 'Eupenicillium_ochrosalmoneum' ACCA-GAATTT--CCAATTTTTCCTTTCGAATTTTTCCT----GGGTCAT 'Penicillium_decaturense' TTCG--AATTG-------------AATTGCGAGCGTGGG----ATCATTT 'Aspergillus_nidulans' CCATTGGTTAC--TGTT--ATATCAAAATCG----AATT----TGTATTG 'Aspergillus_oryzae' TCGTTCGTGAA--AATTGTGTGTGTTAGTCGTCATGATT----TGAACAC 'Penicillium_viticola' -GACTAATGGATACTTTTTCCCGGTA--ACAGGACAAGGATGGCGATGGT 'Penicillium_angulare' -TACTAATGGATACTT-TTCCCGATA--ACAGGACAAGGATGGCGATGGT 'Penicillium_brocae' -TACTAATGGATACTT-TTCCCGGTA--ATAGGACAAGGATGGCGATGGT 'Penicillium_adametzii' ATACTAATGGATACTT-TTCCCGGTA--ACAGGACAAGGATGGCGATGGT 'Penicillium_sclerotiorum' -TGCTGATGGATATGT-TCTCCGGCA--ATAGGACAAGGATGGTGATGGT 'Penicillium_multicolor' -TGCTGATGGATATGT-TCTCCGGCA--ATAGGACAAGGATGGTGATGGT 'Eupenicillium_hirayamae' -TACTGATAAATACGT-TCTGCTTCA--ATAGGACAAGGACGGCGATGGT 'Penicillium_thiersii' -TACTAATGGATACTT-TCTCCGGCC--ATAGGACAAGGATGGCGATGGT 'Penicillium_glabrum' -ACCTAATGAATGCTT-TC--CCGTA--ATAGGACAAGGATGGCGATGGT 'Penicillium_purpurascens' -ACCTAATGGATACTT-TC--CCGTA--ATAGGACAAGGATGGCGATGGT 'Penicillium_thomii' -AGCTAATGAATACTT-TC--CCGTA--ATAGGACAAGGATGGCGATGGT 'Eupenicillium_pinetorum' -AACTAATGGATACTT-TT--CCGAA--ATAGGACAAGGATGGCGATGGT 'Penicillium_spinulosum' -AATTAATGGATACTT-TG--CCGTA--ATAGGACAAGGATGGCGATGGT 'Penicillium_lividum' -TATTAATG----CTT-TT--GCCTA--ATAGGACAAGGATGGCGATGGT 'Penicillium_astrolabium' -GACTGGCG-AT-GTT-TC-CG--CA--ATAGGACAAGGATGGCGATGGT 'Penicillium_jensenii' -TACTGACGGCT-TTG-TT-CG--AA--ATAGGACAAGGATGGCGATGGT 'Penicillium_coffeae' -TGCTAACCTGA-ATT-AC-T-------ACAGGACAAGGATGGCGATGGT 'Eupenicillium_idahoense' -TACTGATGGAC-TTT-TCGTGATCA--ACAGGACAAGGATGGCGATGGT 'Penicillium_griseolum' -TACTGATGGACCTTT-TCTCGTGTG--ACAGGACAAGGATGGCGATGGT 'Penicillium_chermesinum' -AGCTAACCAGTAATG-CC-TG--GA--ATAGGACAAGGATGGCGATGGT 'Penicillium_indicum' TAGCTAACAAATAATG-CC-TG--TA--ATAGGACAAGGATGGCGATGGT 'Penicillium_charlesii' CAGCTAACCGC-GTTA-TT-T---CA--ACAGGACAAGGATGGCGATGGT 'Penicillium_georgiense' CCGTTAACAAG-ATTG-TCACAATCA--ACAGGACAAGGATGGCGATGGT 'Eupenicillium_cinnamopurpureum' -TACTGACCGG-ACTTTCGGTGATCA--ACAGGACAAGGATGGCGATGGT 'Penicillium_parvulum' -TACTGACGGG-ACTTTTGGGGATCA--ACAGGACAAGGATGGCGATGGT 'Penicillium_citreonigrum' -GACTGATAAG-ACTT-TTTCCA-CA--ACAGGACAAGGATGGCGATGGT 'Penicillium_restrictum' -GACTGATGGG-ACTT-TTTTCGTCA--ACAGGACAAGGATGGCGATGGT 'Penicillium_implicatum' GTGCTGATGAG-ACCC-TGGTGATGA--ACAGGACAAGGACGGCGATGGT 'Eupenicillium_ochrosalmoneum' GTACTGATGGGATTCGCTTGTGATCA--ACAGGACAAGGATGGCGATGGT 'Penicillium_decaturense' AGGCTGACGAGTTATC-TTGTGATCG--ACAGGACAAGGATGGCGATGGT 'Aspergillus_nidulans' AGAGTATACTAATACATTCCCACTAA--ACAGGACAAGGATGGCGATGGT 'Aspergillus_oryzae' AAGCTGACTTGGCTTTTCTTGGTTTCCTATAGGACAAGGACGGTGATGGT 'Penicillium_viticola' GAGTGCGATCATTAT-----CGA-GCTCGATGATTTGAG--GACCGATTA 'Penicillium_angulare' GAGTGCGATCGTTAT-----CGG-ACTCGATGATTT-AA--AACCGATTA 'Penicillium_brocae' GAGTGCGACCGTCTT-----CGA-TACCGATGATTTTAG--ATGCGATCA 'Penicillium_adametzii' GAGTGCGATCGTCTT-----CG-------ATGACTTCAG--ATCAGATTG 'Penicillium_sclerotiorum' TAGTGCGACCGTCGG-----CGA-TTTT-TTAAATTCCA--TACCGACTG 'Penicillium_multicolor' TAGTGCGACCGTCGG-----CGA-TTTT-TCTGAT-CCA--AGCCGACTG 'Eupenicillium_hirayamae' GAGTGCGACCGTCTG-----CGA-TTAT-TT-----CCA--GGCCGACTG 'Penicillium_thiersii' GAGTGCGACCGTTTA-----CGA-TGAC-TT-----CAA--GCTTGATTG 'Penicillium_glabrum' GAGTGCGACCGTCTG-----CAA-TACCTTCACACCCGATAATACGACAA 'Penicillium_purpurascens' GAGTGCGACCGTCTG-----CAA-TACCTTCACACCCGATAATACGACAA 'Penicillium_thomii' GAGTGCGACCGTCTG-----CAA-TACCTTCACGCCCGATAATACGACAA 'Eupenicillium_pinetorum' GAGTGCGACCGTCTG-----CAA-TACCTTTACGCCCGATGATACGATAA 'Penicillium_spinulosum' GAGTGCGACCGTCTG-----CAA-TACTTTCACGCCCGATAATACGACAA 'Penicillium_lividum' GAGTGCGACCGTTT------CGA-TACCTTCAGACCCGATAATAC----- 'Penicillium_astrolabium' GAGTG--ATCGCG-----------GAGCT------------------TA- 'Penicillium_jensenii' AAGTGTGACCTCGCC-----CGACAAGCCAGTTGAAGT-GGCAGCAGTG- 'Penicillium_coffeae' AAGCCTAATCTCCGC----CCGACAAC-ACT-------------GGACA- 'Eupenicillium_idahoense' GAGTAGGAACTACTC----TATGCACC-A---------------GGGTT- 'Penicillium_griseolum' GAGTACGATCGTT-C----CGGACAAC-TCCAGGC--------TCGATA- 'Penicillium_chermesinum' GAGTGCGATCTGCGCC---CGGGCGAC-ACTAGGCAC---TCTCGGTCA- 'Penicillium_indicum' GAGTGCGATCTGCGCC---CGGGCGAC-ACTAGGCAC---TCTTGGCCA- 'Penicillium_charlesii' GAGTGC-------------CCGATGAC-ACCAGACAT---TAAAGCCCT- 'Penicillium_georgiense' GAGTGCGATCTTCTCGAG-CGGCTTAT-ACCTGAGATGAGCTCTGTCCA- 'Eupenicillium_cinnamopurpureum' GAGTGCGACCTA-------CTCCAGAC-ATCCG-CAC---TCTTCTACT- 'Penicillium_parvulum' GAGTGTGAACTA-------CTCCAGCC-ACCCA-CGC---TCTTCTAGT- 'Penicillium_citreonigrum' GAGTGCGATCGTTCCTGA-CAGCTCGT-CGCGGGTGCTTTTCTCTGGCG- 'Penicillium_restrictum' GAGTGCGATCGTTCCTGA-CAGCTCGT-CGCGGGCGCTTT-CTCTGGCGA 'Penicillium_implicatum' GAGTGCGATTGCTTC--------TGCC-TACCTGCGGCCTAGTCGAGCAC 'Eupenicillium_ochrosalmoneum' GAGTGCGATCTCTCCGAAAGGC-CGCC-TTACGCTGGTCTTTTTCA-TTT 'Penicillium_decaturense' TAGTGCGGCCTAAGCTGAACAACTCAT-GTCCTTTTCACGGGCGGTGTTT 'Aspergillus_nidulans' TAGTGCA-TCTGTCCCCCCAGGCTTG--ATCGCATTCGCCCAGCATGTCT 'Aspergillus_oryzae' TAGTACAGTTTATTTATTCAATCTCCC-ATCAAATGCGATCAATATGTTT 'Penicillium_viticola' TG--TCC---------TCTATGTTGAGCGAAC--------GAATAACTGA 'Penicillium_angulare' TG--TAC---------TCTATATCAAGTGAAC--------GAGTGACTGA 'Penicillium_brocae' CG--CCT---------GATTTATCGATTGAAC--------AAATAACTGA 'Penicillium_adametzii' TG--CTC---------TCTCCATTGAGCGAAC--------GAATAACTAA 'Penicillium_sclerotiorum' GA--GTA---------TACTCGCTGAGGGAACC-------GAATAACTGA 'Penicillium_multicolor' GA--TCA---------TTCCCACTGGGAGAACC-------GAATAACTGA 'Eupenicillium_hirayamae' TA--TCA---------CCCCTATTGAGAGGACC-------GAATAACTGA 'Penicillium_thiersii' TG--CCA---------CGGCCATTCAGCG-AC--------CAATAACTAA 'Penicillium_glabrum' TA--CGACAATA-CGGTGCCCATAACGCGAAC--------AAATGACTGA 'Penicillium_purpurascens' TA--CGACAATA-CGGTGCCCATTACGCGAAC--------ATATGACTGA 'Penicillium_thomii' TA--CGACAAAC-CGGTGCCCATTAAGCGAAC--------ATATAACTAA 'Eupenicillium_pinetorum' TA--CGACAAAAACGGTGCCCATTACGCGAAT--------CTGTAACTGA 'Penicillium_spinulosum' TA--CGATAATA-TGGTGCCCATTACGCGAGC--------ATGTAACTGA 'Penicillium_lividum' TA--CG------------CCCATATAGCGAAC--------ATTTAACTGA 'Penicillium_astrolabium' ----CCTC------------CAGAGCGC-AAC--------AATTTCCTAA 'Penicillium_jensenii' ----TCTC---CTGTTCCCGAATTGAAAGAAC--------GATATACTAA 'Penicillium_coffeae' ----CAAC---AAGCCTTTGCAATTGGAATAT--------CCCCGACTAA 'Eupenicillium_idahoense' ----TTTC---TGGCTGGT-CGATTGCAAGGG--------AAGACACTAA 'Penicillium_griseolum' ----TTAC---CCCCGCCTATAG--GAGGCAC--------ATATGACTGA 'Penicillium_chermesinum' ----TGAG---CAAT---CGAGG------AAA--------TTTTTACTGA 'Penicillium_indicum' ----TGAG---AAAT---TGAAG------AAA--------TTTTTACTGA 'Penicillium_charlesii' ----CCAG---CAAT---TGGAG------TCA--------TCTTGACTGA 'Penicillium_georgiense' ---TCGAT---ATTG---TGCGA----AAGAC--------ACTTGGCTAA 'Eupenicillium_cinnamopurpureum' ----CGAT---CGAT---TGCAA------CGC--------ATAATACTAA 'Penicillium_parvulum' ----CGAT---CGAT---TGCAA------TCC--------CCAATACTAA 'Penicillium_citreonigrum' ---GCGATACACAAT-CATGCGA--GAAAGAT--------GTAT-ACTGA 'Penicillium_restrictum' TCGGTGACGCAGGGTACAAACGA--GAAAGAG--------ATAT-ACTGA 'Penicillium_implicatum' TC-TCG---T-CGACCGAGGCAA----AGACC--------ACATTACTGA 'Eupenicillium_ochrosalmoneum' TC-TTGAAAC-CGATTGGAAGAATGGAAGAAT--------ACATTGCTGA 'Penicillium_decaturense' TCTTCGCGATTTGATTCCATCAACTGATTGCTGA------ACCCTGCTAA 'Aspergillus_nidulans' ------GCTGTAGCTCTATATAA---CCGTTT------------------ 'Aspergillus_oryzae' TA-GCCGCCATAATTTTATCCAGTTTCTGTTCGATCGGCTGAAGTCTTGG 'Penicillium_viticola' GACGAAT---ACA-CTTGA----TAGGACAAATTACCACCAAGGAGCTGG 'Penicillium_angulare' GACGAAT---AAA-CTCGA----TAGGACAAATCACTACCAAGGAGCTGG 'Penicillium_brocae' GACGAAT---AAA-CTCGA----CAGGCCAGATTACCACCAAGGAGCTGG 'Penicillium_adametzii' GACGAAT---AAAATTCAA----CAGGCCAGATCACTACCAAGGAGCTGG 'Penicillium_sclerotiorum' GATCGAT---TAA--TCTA----TAGGACAAATCACCACCAAGGAGCTGG 'Penicillium_multicolor' GACCGAT---CAA--TCTA----TAGGACAAATCACTACCAAGGAGTTGG 'Eupenicillium_hirayamae' GATCAAT---CAA--TATA----TAGGCCAAATCACTACCAAGGAGCTGG 'Penicillium_thiersii' GA-CAAG---TGA--TCAA----TAGGACAAATCACCACCAAGGAGCTGG 'Penicillium_glabrum' GACGAAT---GAA--TTGAA---TAGGACAAATCACCACCAAGGAGTTGG 'Penicillium_purpurascens' GACGAAT---GAA--TTGAA---TAGGACAAATCACCACCAAGGAGCTGG 'Penicillium_thomii' GAGGAAT---AAA--TTGAA---TAGGACAAATCACCACCAAGGAGCTGG 'Eupenicillium_pinetorum' GACGAAT---AAA--TTGAA---TAGGACAAATCACCACCAAGGAGTTGG 'Penicillium_spinulosum' GACGAAT---GAA--TTGAA---TAGGACAAATCACCACCAAGGAGCTGG 'Penicillium_lividum' GACGAAT---GGA--TGGAA---TAGGACAGATCACCACCAAGGAGCTGG 'Penicillium_astrolabium' TACTTAA---TTC--TCC-----CAGGACAAATCACCACCAAGGAGCTTG 'Penicillium_jensenii' GACCGAT---CCC--ACCTC---CAGGACAAATTACCACCAAGGAGCTTG 'Penicillium_coffeae' GAC-GAA---TTG--AATAA---TAGGCCAGATCACCACCAAGGAGCTTG 'Eupenicillium_idahoense' ATC-T-----TCC--ATCCA---TAGGACAAATCACCACCAAGGAGCTTG 'Penicillium_griseolum' GAC-GAA---TGA--ACCAA---TAGGCCAGATCACTACCAAGGAGCTGG 'Penicillium_chermesinum' GACGAAT---TGA---TGAA---TAGGACAAATCACCACCAAGGAGCTGG 'Penicillium_indicum' GACGGAT---CAA---TGAA---CAGGACAAATCACCACCAAGGAGCTCG 'Penicillium_charlesii' GACGAAA---TGA---TCAT---TAGGACAAATCACCACCAAGGAGCTTG 'Penicillium_georgiense' GAC-ATC---TGA---TATCA--CAGGCCAAATCACCACCAAGGAGCTGG 'Eupenicillium_cinnamopurpureum' -ACC-GC---TGC---CGA----TAGGACAAATCACCACCAAAGAGCTCG 'Penicillium_parvulum' -TCCCGC---TGC---CGA----TAGGACAAATCACCACCAAGGAGCTCG 'Penicillium_citreonigrum' GAC-GAA---TGA---CCAA---TAGGCCAGATCACCACCAAGGAGCTGG 'Penicillium_restrictum' GAC-GTA---TGA---CTTA---TAGGCCAGATCACCACCAAGGAGCTGG 'Penicillium_implicatum' GACATTT---GGA---TCCA---CAGGCCAGATCACCACCAAGGAGCTGG 'Eupenicillium_ochrosalmoneum' GAC-CGA---CGA---CCAA---TAGGCCAGATCACCACCAAAGAGCTGG 'Penicillium_decaturense' AAAAAATATTTGCGATCTG----TAGGAGAAATCACCACCAAGGAGCTTG 'Aspergillus_nidulans' --CTGACAAACGG---CGA----CAGGCCAGATTACCACTAAGGAGCTTG 'Aspergillus_oryzae' CATTGATGAATTGACTTGATATGCAGGCCAGATCACCACCAAGGAGTTGG 'Penicillium_viticola' GCACTGTCATGCGCTCCCTCGGTCAGAACCCCTCCGAGTCCAAGTTGCAG 'Penicillium_angulare' GCACTGTCATGCGCTCCCTCGGTCAGAACCCCTCCGAGTCCGAGCTGCAG 'Penicillium_brocae' GCACTGTCATGCGCTCCCTCGGCCAGAACCCCTCCGAGTCTGAGTTGCAG 'Penicillium_adametzii' GCACTGTCATGCGCTCTCTCGGCCAGAACCCCTCCGAGTCCGAGCTGCAG 'Penicillium_sclerotiorum' GCACCGTCATGCGCTCCCTCGGCCAGAACCCCTCCGAGTCCGAGCTTCAG 'Penicillium_multicolor' GCACTGTCATGCGCTCCCTCGGCCAGAACCCCTCCGAGTCCGAGCTTCAG 'Eupenicillium_hirayamae' GCACTGTCATGCGCTCCCTCGGCCAAAACCCCTCCGAGTCTGAGCTTCAG 'Penicillium_thiersii' GTACTGTCATGCGCTCCCTCGGCCAGAACCCCTCTGAGTCTGAGCTGCAG 'Penicillium_glabrum' GCACCGTCATGCGCTCGCTCGGCCAGAACCCCTCTGAGTCTGAGTTGCAG 'Penicillium_purpurascens' GCACCGTCATGCGCTCGCTCGGCCAGAACCCCTCTGAGTCTGAGTTGCAG 'Penicillium_thomii' GCACCGTCATGCGCTCGCTCGGCCAGAACCCCTCTGAGTCTGAGTTGCAG 'Eupenicillium_pinetorum' GCACCGTCATGCGCTCGCTCGGCCAGAACCCCTCTGAGTCTGAGTTGCAG 'Penicillium_spinulosum' GCACCGTCATGCGCTCTCTCGGCCAGAACCCCTCCGAGTCTGAGTTGCAG 'Penicillium_lividum' GCACTGTCATGCGCTCCCTCGGCCAGAACCCCTCCGAGTCTGAGCTGCAG 'Penicillium_astrolabium' GCACCGTCATGCGCTCGCTGGGTCAGAACCCCTCCGAGTCCGAGCTGCAG 'Penicillium_jensenii' GCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAG 'Penicillium_coffeae' GTACCGTCATGCGCTCCCTCGGCCAGAACCCCTCCGAGTCTGAGCTGCAG 'Eupenicillium_idahoense' GTACCGTGATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCGGAGCTGCAG 'Penicillium_griseolum' GCACCGTCATGCGCTCTCTCGGCCAGAACCCGTCCGAGTCTGAGCTGCAG 'Penicillium_chermesinum' GCACTGTCATGCGCTCTCTCGGCCAGAACCCCTCCGAGTCTGAGCTGCAG 'Penicillium_indicum' GCACTGTCATGCGCTCTCTCGGCCAGAACCCCTCCGAGTCTGAGCTGCAG 'Penicillium_charlesii' GCACTGTCATGCGCTCGCTTGGCCAGAACCCCTCCGAGTCTGAGCTGCAG 'Penicillium_georgiense' GAACTGTCATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCTGAGCTGCAG 'Eupenicillium_cinnamopurpureum' GCACCGTGATGCGCTCGTTGGGTCAGAACCCCTCCGAGTCGGAGCTGCAG 'Penicillium_parvulum' GCACCGTGATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCGGAGCTGCAG 'Penicillium_citreonigrum' GCACTGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAATCTGAGCTGCAG 'Penicillium_restrictum' GTACTGTCATGCGCTCTCTGGGCCAGAACCCGTCCGAGTCTGAGCTGCAG 'Penicillium_implicatum' GCACTGTCATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCTGAATTGCAG 'Eupenicillium_ochrosalmoneum' GCACTGTCATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAG 'Penicillium_decaturense' GCACCGTCATGCGCTCCCTCGGCCAGAACCCCTCCGAGTCTGAGCTGCAG 'Aspergillus_nidulans' GCACTGTCATGCGCTCGCTCGGTCAGAATCCTTCAGAGTCTGAGCTTCAG 'Aspergillus_oryzae' GCACTGTCATGCGCTCTCTGGGCCAAAACCCCTCTGAGTCGGAACTCCAG 'Penicillium_viticola' GACATGATCAACGAGGTCGACGCCGATAACAACGGTACCATTGACTTCCC 'Penicillium_angulare' GACATGATCAACGAGGTCGACGCCGATAACAACGGTACCATTGACTTCCC 'Penicillium_brocae' GACATGATTAACGAGGTTGACGCTGATAACAACGGAACCATTGACTTCCC 'Penicillium_adametzii' GATATGATCAACGAGGTCGACGCCGATAATAACGGTACAATTGACTTCCC 'Penicillium_sclerotiorum' GACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATTGACTTCCC 'Penicillium_multicolor' GACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATTGACTTCCC 'Eupenicillium_hirayamae' GATATGATTAACGAGGTCGATGCCGACAACAACGGTACCATTGACTTCCC 'Penicillium_thiersii' GACATGATTAATGAGGTCGACGCTGACAACAACGGCACCATTGACTTCCC 'Penicillium_glabrum' GACATGATCAATGAGGTCGATGCCGACAACAACGGCACCATTGACTTCCC 'Penicillium_purpurascens' GACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATTGACTTCCC 'Penicillium_thomii' GACATGATCAACGAGGTCGACGCCGACAACAACGGTACCATTGACTTCCC 'Eupenicillium_pinetorum' GACATGATCAACGAGGTTGATGCCGACAACAACGGTACCATTGACTTCCC 'Penicillium_spinulosum' GACATGATCAACGAGGTCGATGCCGACAACAACGGTACCATTGACTTCCC 'Penicillium_lividum' GATATGATCAACGAGGTTGATGCCGATAACAACGGTACCATTGATTTCCC 'Penicillium_astrolabium' GATATGATCAACGAGGTTGATGCCGACAACAACGGCACCATCGACTTCCC 'Penicillium_jensenii' GACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCC 'Penicillium_coffeae' GACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGATTTCCC 'Eupenicillium_idahoense' GACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCC 'Penicillium_griseolum' GATATGATCAACGAGGTCGATGCCGACAACAACGGCACCATTGACTTCCC 'Penicillium_chermesinum' GACATGATCAATGAGGTTGACGCTGATAACAACGGCACCATCGATTTTCC 'Penicillium_indicum' GACATGATCAATGAGGTTGACGCCGATAACAACGGCACTATCGATTTCCC 'Penicillium_charlesii' GACATGATCAACGAAGTCGACGCCGACAACAACGGCACCATTGATTTCCC 'Penicillium_georgiense' GACATGATCAACGAGGTTGATGCCGACAATAACGGCACCATTGACTTCCC 'Eupenicillium_cinnamopurpureum' GACATGATCAACGAGGTTGATGCCGACAACAACGGCACCATTGACTTCCC 'Penicillium_parvulum' GACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCC 'Penicillium_citreonigrum' GACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCC 'Penicillium_restrictum' GACATGATCAACGAGGTCGATGCCGACAACAACGGCACCATTGACTTCCC 'Penicillium_implicatum' GACATGATCAACGAGGTGGATGCCGACAACAACGGCACCATTGACTTCCC 'Eupenicillium_ochrosalmoneum' GATATGATCAATGAGGTCGATGCCGACAACAACGGCACCATTGACTTCCC 'Penicillium_decaturense' GATATGATCAACGAGGTCGATGCCGATAACAACGGTACCATCGATTTCCC 'Aspergillus_nidulans' GACATGATCAACGAAGTTGACGCCGACAACAATGGCACCATTGACTTTCC 'Aspergillus_oryzae' GACATGATTAACGAGGTTGACGCCGACAACAATGGCACCATTGACTTCCC 'Penicillium_viticola' TGGTACGATCTCCCTA--CCCT---CCG-AATAAC-CCAAGCCTCG---- 'Penicillium_angulare' TGGTACGATCTCCCT-----CT---CCG-AATAAT-CCAAGCCTCG---- 'Penicillium_brocae' TGGTACGACCGTCCTT--CCCT---TCG-AACGAT-TCAAGCTCCA---- 'Penicillium_adametzii' TGGTACGATATGCCTC--CCCTATATTC-AAGAAA-CCCAACCTAG---- 'Penicillium_sclerotiorum' TGGTACGATTTCC-----CTTCCACTCG-AATGACCCCGTGCTTCGTACT 'Penicillium_multicolor' TGGTACGATT-CC-----TTTCCACCCG-AAAGCTCCCGCACT-CG---- 'Eupenicillium_hirayamae' TGGTACGAGTTTCTCTTTCTTCCACCCG-AAATGCCCCATACT-CG---- 'Penicillium_thiersii' TGGTATGACTTCTCC---TCAAAACTCGCAATCACGCCGGGGTATT---- 'Penicillium_glabrum' TGGTACGATTCCTTCC-ACCGAATATCG-AAGCCCTCCAGCC--CG---- 'Penicillium_purpurascens' TGGTACGATCCCTCCC-ACCGAATATCG-AAGCCCTCCAGCC--CG---- 'Penicillium_thomii' TGGTACGATCTCCCCA-TCCCTATTTCG-AAGCCCTCCAGCC--CG---- 'Eupenicillium_pinetorum' TGGTACGATGCCCCC--ACCGAATCTCG-AAGCCCTCCAGCC--CA---- 'Penicillium_spinulosum' TGGTACGATGTCCCCT-ACCGAATCTGG-AATCCCTCCAGCC--CG---- 'Penicillium_lividum' TGGTACGATATCCCC--GCCGAACTTTG-AATCCCTTCAAGC--CG---- 'Penicillium_astrolabium' CGGTACTTC--------CCTCT----TC-CCTG---CGAGAT--CC---- 'Penicillium_jensenii' CGGTACTTT--------CCCGT----GT-CCC----CTAGA---CC---- 'Penicillium_coffeae' TGGTATGTGATTCCTGCGCTGT----TC-ACCGGAACTCCAT--GC---- 'Eupenicillium_idahoense' CGGTACGAA------GAATTGA----TT--------CCCCGT--CG---- 'Penicillium_griseolum' CGGTACGAA-----CCCTCTCA----CC-ACCGTCGCTCAATCCAGA--- 'Penicillium_chermesinum' CGGTACGAGATACCTGCGATTT-------TCTAGGACCCCACTGCTT--- 'Penicillium_indicum' CGGTACGAGACATCTGCGATTT-------TCTATACCCTCACTAAAT--- 'Penicillium_charlesii' CGGTATAAAATTGCTGCACCCCCTTCCC-TCTCTGGCCCTTCTCGGT--- 'Penicillium_georgiense' TGGTATGACACCGCT--------------TCTACG-TCACACAAG----- 'Eupenicillium_cinnamopurpureum' CGGTACAAAACCAGC-CAAC---------CCTTCGCTCAGCCCCC----- 'Penicillium_parvulum' CGGTACGAAACCAGC-CA-C---------TCTGCGCTCCACCCCCT---- 'Penicillium_citreonigrum' CGGTATGATT------C------------TTTTCCTTCGTGCAGATC--- 'Penicillium_restrictum' CGGTATGGTT------C------------CTTCGATTCCTGCCGATC--- 'Penicillium_implicatum' CGGTACAACCCCACCGC------------CCTCACATCCTACATA----- 'Eupenicillium_ochrosalmoneum' CGGTACGGCC--GTCAC------------CCTCACATCTTGCCCAGC--- 'Penicillium_decaturense' CGGTACGCTTCCCCTCCCACTTCCGTT--ATCTACTCCTCTCTTCTCGTC 'Aspergillus_nidulans' AGGTACGCGAACTCC-----------CCAATCTACTTCGCACC------- 'Aspergillus_oryzae' TGGTACGAGACGGCT-----------TCCGTACGATTCATA--------- 'Penicillium_viticola' -AAACC-----TCGTATT--GATATGTGG--------ACACA--GAGTTC 'Penicillium_angulare' -GAATAA----TTGCATT--GACATGCGG--------ACACA--GAGTTT 'Penicillium_brocae' -GACCC-------ATATT--AACATGCG---------ACACA--GAGTTC 'Penicillium_adametzii' -GACTC-------GTATT--GACATGCG---------ACACA--GAGTTC 'Penicillium_sclerotiorum' CGCTTCCGGACATATGTT--AACATGCG---------GCACA--GAGTTC 'Penicillium_multicolor' -GCCCCCGGACATATGTT--AACATGCG---------GCACA--GAGTTC 'Eupenicillium_hirayamae' --CCATTCGCCATATATT--GACAGACG---------GCACACAGAGTTC 'Penicillium_thiersii' CTACCCGAGACTCATAAT--AACTTGCG-----------ACA--GAATTC 'Penicillium_glabrum' -AATCC-------ATATT--GACATGTG-----------ACA--GAGTTC 'Penicillium_purpurascens' -AACCC-------ATATT--GACATGTG-----------ACA--GAGTTC 'Penicillium_thomii' -AATCC-------ATATT--GACATGTG-----------ACA--GAGTTT 'Eupenicillium_pinetorum' -AATCC-------ATATT--GACATGTG-----------ACA--GAGTTC 'Penicillium_spinulosum' -AATCC-------ATATT--GACATGTG-----------ACA--GAGTTC 'Penicillium_lividum' -AATCT-------ATATT--GATATGTG-----------ACA--GAGTTC 'Penicillium_astrolabium' CGCATACGG-C---TGTT--GACAAGCG----------AATA--GAATTC 'Penicillium_jensenii' CACATGAGA-CGG-TATT--AACCCGCC----------AATA--GAGTTC 'Penicillium_coffeae' GACTTTTGTTCTT-CGTCCGGACCTGTGCTTACAACATAACA--GAGTTC 'Eupenicillium_idahoense' AAAGTTTGGTCTT-TATT--GACGTGCG-----------ACA--GAGTTC 'Penicillium_griseolum' GATGTATGGACGTATATT--GACACGCG-----------ACA--GAGTTC 'Penicillium_chermesinum' CCACCTAGATCGTTTACT--GACGTTCA-----------ATA--GAGTTC 'Penicillium_indicum' TCACTCAGACCTTTTACT--GACGTCCA-----------ATA--GAGTTC 'Penicillium_charlesii' TGACCCGGACTGT-TACT--GATCTTCG----------ACTA--GAATTC 'Penicillium_georgiense' --ATATGGATCTC-TTCT--GACGTGCG-----------ACA--GAGTTC 'Eupenicillium_cinnamopurpureum' ------GAAC--TTTATT--GACATGCG-----------ACA--GAGTTT 'Penicillium_parvulum' ---CTCGAAC--TTTATT--GACATGCG-----------ACA--GAGTTC 'Penicillium_citreonigrum' GGGTCC--AC-A-GTACT--GATCTCCGCCC--------GCA--GAGTTC 'Penicillium_restrictum' GGGCCC--AC-A-GTACT--GATCCCCGCCC--------GCA--GAGTTC 'Penicillium_implicatum' -----TGGGC-GTGTATT--GACGTGCG-----------ACA--GAGTTC 'Eupenicillium_ochrosalmoneum' GCACCTGGAC-ATGTATT--GACGTGCG-----------ACA--GAATTC 'Penicillium_decaturense' CCCTCCGCCCGTCAAAACAAGATCAATATTGACATGCGCCCACAGAGTTT 'Aspergillus_nidulans' --AGCCTAGAAATGTACT--AATGCT-A----------AACA--GAGTTC 'Aspergillus_oryzae' ---AATGAAATAGCTGTT--AATGTTCA----------AATA--GAGTTC 'Penicillium_viticola' CTTACCATGATGGCGCGTAAGATGAAGGACACCGACTCCGAGGAGGAGAT 'Penicillium_angulare' CTTACCATGATGGCGCGTAAGATGAAGGACACCGACTCCGAGGAGGAGAT 'Penicillium_brocae' CTTACCATGATGGCACGTAAGATGAAGGACACCGACTCCGAGGAGGAGAT 'Penicillium_adametzii' CTTACCATGATGGCGCGTAAGATGAAGGATACCGACTCCGAGGAGGAGAT 'Penicillium_sclerotiorum' CTGACCATGATGGCCCGTAAGATGAAGGACACCGACTCCGAGGAGGAGAT 'Penicillium_multicolor' CTTACCATGATGGCCCGTAAGATGAAGGACACCGACTCCGAGGAGGAGAT 'Eupenicillium_hirayamae' CTGACCATGATGGCCCGTAAGATGAAGGACACCGACTCCGAGGAGGAGAT 'Penicillium_thiersii' CTCACCATGATGGCCCGTAAGATGAAAGACACCGACTCCGAGGAGGAGAT 'Penicillium_glabrum' CTCACCATGATGGCCCGTAAGATGAAGGATACCGACTCCGAGGAGGAGAT 'Penicillium_purpurascens' CTCACCATGATGGCCCGTAAGATGAAGGATACCGACTCCGAGGAGGAGAT 'Penicillium_thomii' CTCACCATGATGGCCCGTAAGATGAAGGACACCGACTCCGAGGAGGAGAT 'Eupenicillium_pinetorum' CTCACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGAT 'Penicillium_spinulosum' CTCACCATGATGGCCCGTAAGATGAAGGACACCGACTCCGAGGAGGAGAT 'Penicillium_lividum' CTCACTATGATGGCCCGTAAGATGAAGGACACCGACTCCGAGGAGGAGAT 'Penicillium_astrolabium' CTGACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGAT 'Penicillium_jensenii' TTGACCATGATGGCCCGCAAGATGAAGGACACAGATTCCGAGGAGGAGAT 'Penicillium_coffeae' CTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGAT 'Eupenicillium_idahoense' CTCACCATGATGGCTCGGAAGATGAAGGACACGGACTCGGAGGAGGAGAT 'Penicillium_griseolum' CTCACCATGATGGCCCGTAAGATGAAGGACACCGACTCGGAGGAGGAGAT 'Penicillium_chermesinum' CTTACCATGATGGCCCGTAAGATGAAGGATACCGACTCAGAGGAGGAGAT 'Penicillium_indicum' CTTACCATGATGGCTCGTAAGATGAAGGATACCGACTCAGAGGAGGAGAT 'Penicillium_charlesii' CTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGAT 'Penicillium_georgiense' CTCACCATGATGGCCCGTAAGATGAAGGATACCGACTCCGAGGAGGAGAT 'Eupenicillium_cinnamopurpureum' CTCACTATGATGGCCCGGAAGATGAAGGACACGGACTCGGAGGAGGAGAT 'Penicillium_parvulum' CTCACCATGATGGCCCGGAAGATGAAGGACACGGACTCGGAGGAGGAGAT 'Penicillium_citreonigrum' CTCACCATGATGGCTCGTAAGATGAAGGACACCGATTCCGAGGAGGAGAT 'Penicillium_restrictum' CTTACCATGATGGCCCGTAAGATGAAGGACACCGACTCGGAGGAGGAGAT 'Penicillium_implicatum' CTCACCATGATGGCCCGTAAGATGAAGGACACCGACTCCGAGGAGGAGAT 'Eupenicillium_ochrosalmoneum' CTCACCATGATGGCCCGGAAGATGAAGGACACGGACTCGGAGGAGGAGAT 'Penicillium_decaturense' CTGACCATGATGGCCCGTAAGATGAAGGACACCGACTCCGAGGAGGAGAT 'Aspergillus_nidulans' CTTACCATGATGGCCAGAAAGATGAAGGACACCGATTCCGAGGAGGAAAT 'Aspergillus_oryzae' CTGACGATGATGGCGAGAAAGATGAAGGATACCGACTCTGAGGAGGAGAT 'Penicillium_viticola' CCGCGAGGCCTTCAAGGTCTTCGACCGCGACAACAACGGCTTCATCTCCG 'Penicillium_angulare' TCGAGAGGCTTTCAAGGTCTTCGACCGCGACAACAACGGCTTCATCTCCG 'Penicillium_brocae' TCGCGAGGCTTTCAAGGTCTTTGACCGCGACAACAACGGATTTATCTCTG 'Penicillium_adametzii' CCGAGAGGCATTCAAGGTGTTCGACCGCGATAACAACGGCTTCATCTCAG 'Penicillium_sclerotiorum' CCGTGAGGCCTTCAAGGTTTTCGACCGCGACAACAACGGTTTCATTTCCG 'Penicillium_multicolor' CCGTGAGGCATTCAAGGTTTTCGACCGTGACAACAACGGTTTCATTTCCG 'Eupenicillium_hirayamae' CCGTGAGGCATTCAAAGTCTTCGACCGCGACAACAACGGTTTCATCTCCG 'Penicillium_thiersii' TCGTGAGGCATTCAAGGTGTTCGACCGCGATAACAACGGTTTTATCTCCG 'Penicillium_glabrum' CCGTGAGGCGTTCAAGGTGTTCGATCGCGACAACAACGGCTTCATCTCTG 'Penicillium_purpurascens' CCGTGAGGCGTTCAAGGTGTTCGATCGCGACAACAACGGCTTCATCTCTG 'Penicillium_thomii' CCGCGAGGCGTTCAAGGTGTTCGATCGCGACAACAACGGCTTCATCTCTG 'Eupenicillium_pinetorum' CCGCGAGGCGTTCAAGGTCTTCGATCGCGACAACAACGGCTTCATCTCGG 'Penicillium_spinulosum' CCGCGAGGCGTTCAAGGTCTTCGATCGCGACAACAACGGCTTCATCTCTG 'Penicillium_lividum' CCGCGAGGCGTTCAAGGTGTTCGATCGCGACAATAATGGCTTTATCTCTG 'Penicillium_astrolabium' CCGTGAGGCATTCAAGGTGTTCGATCGCGATAACAACGGTTTCATTTCCG 'Penicillium_jensenii' TCGCGAAGCGTTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCG 'Penicillium_coffeae' TCGTGAGGCATTCAAGGTGTTCGACCGTGACAACAACGGCTTCATCTCCG 'Eupenicillium_idahoense' CCGGGAGGCGTTCAAGGTGTTCGACCGCGACAACAACGGCTTCATCTCCG 'Penicillium_griseolum' CCGGGAGGCGTTCAAGGTGTTCGACCGCGATAACAATGGCTTCATCTCCG 'Penicillium_chermesinum' TCGGGAGGCATTCAAGGTGTTCGACCGTGACAACAACGGCTTCATCTCTG 'Penicillium_indicum' TCGGGAGGCATTCAAGGTGTTCGACCGTGACAACAACGGTTTCATCTCCG 'Penicillium_charlesii' TCGCGAGGCATTCAAGGTGTTCGATCGCGACAACAACGGTTTCATCTCCG 'Penicillium_georgiense' TCGGGAGGCATTCAAGGTCTTCGACCGCGACAACAACGGCTTCATTTCCG 'Eupenicillium_cinnamopurpureum' CCGGGAGGCATTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCG 'Penicillium_parvulum' CCGCGAGGCATTCAAGGTGTTCGACCGCGACAACAACGGCTTCATCTCCG 'Penicillium_citreonigrum' CCGGGAGGCGTTCAAGGTTTTCGATCGCGACAACAACGGCTTCATCTCCG 'Penicillium_restrictum' CCGGGAGGCGTTCAAGGTTTTCGATCGCGACAACAACGGCTTCATCTCCG 'Penicillium_implicatum' CCGGGAGGCGTTCAAGGTGTTTGACCGCGACAACAACGGCTTCATCTCCG 'Eupenicillium_ochrosalmoneum' CCGGGAGGCGTTCAAGGTGTTCGACCGCGACAACAACGGCTTTATCTCCG 'Penicillium_decaturense' CCGTGAGGCCTTCAAGGTCTTCGACCGTGATAACAACGGTTTCATCTCCG 'Aspergillus_nidulans' TCGGGAGGCGTTCAAGGTCTTCGACCGTGACAACAATGGTTTCATCTCCG 'Aspergillus_oryzae' CCGGGAGGCTTTCAAGGTTTTCGACCGCGATAACAACGGCTTCATCTCCG 'Penicillium_viticola' CCGCCGAGCTGCGCCACGTGATGACCTCAATTGGCGAGAAGCTGACTGAT 'Penicillium_angulare' CCGCCGAGCTGCGCCACGTGATGACCTCAATTGGCGAGAAGCTGACCGAC 'Penicillium_brocae' CCGCCGAGCTGCGCCATGTGATGACCTCAATTGGTGAGAAGCTGACTGAC 'Penicillium_adametzii' CCGCCGAGCTTCGCCATGTGATGACCTCGATTGGCGAGAAGCTGACTGAT 'Penicillium_sclerotiorum' CCGCCGAGCTGCGCCACGTTATGACCTCGATTGGCGAGAAGCTCACTGAC 'Penicillium_multicolor' CTGCTGAGCTGCGCCACGTTATGACCTCGATTGGCGAGAAGCTCACTGAC 'Eupenicillium_hirayamae' CTGCCGAGCTGCGCCACGTTATGACCTCGATTGGTGAGAAGCTGACTGAC 'Penicillium_thiersii' CGGCCGAACTGCGCCATGTCATGACTTCGATCGGCGAGAAGCTGACCGAT 'Penicillium_glabrum' CTGCTGAGCTGCGCCACGTTATGACTTCCATCGGCGAGAAGCTCACTGAC 'Penicillium_purpurascens' CTGCTGAGCTGCGCCACGTTATGACTTCCATCGGCGAGAAGCTCACTGAC 'Penicillium_thomii' CTGCTGAGCTGCGCCACGTCATGACTTCCATCGGCGAGAAGCTCACTGAC 'Eupenicillium_pinetorum' CTGCTGAGCTGCGCCACGTCATGACTTCCATCGGCGAGAAGCTCACTGAC 'Penicillium_spinulosum' CTGCTGAACTGCGCCACGTCATGACTTCCATCGGCGAGAAGCTCACTGAC 'Penicillium_lividum' CTGCCGAGCTGCGCCACGTTATGACTTCCATTGGCGAGAAGCTGACTGAC 'Penicillium_astrolabium' CCGCTGAGCTCCGTCACGTCATGACTTCCATTGGTGAGAAGTTGACTGAC 'Penicillium_jensenii' CCGCTGAGCTGCGTCACGTCATGACCTCCATCGGTGAGAAGCTTACCGAC 'Penicillium_coffeae' CCGCCGAGCTGCGCCACGTCATGACTTCCATTGGTGAGAAGCTGACCGAC 'Eupenicillium_idahoense' CCGCCGAGCTGCGCCACGTCATGACCTCCATCGGCGAGAAGCTGACCGAT 'Penicillium_griseolum' CCGCCGAGCTGCGCCACGTGATGACCTCGATCGGTGAGAAGCTGACCGAC 'Penicillium_chermesinum' CTGCTGAGCTGCGCCATGTCATGACCTCCATCGGTGAGAAGCTAACCGAC 'Penicillium_indicum' CCGCTGAGCTGCGCCATGTCATGACCTCCATCGGTGAGAAGCTCACCGAC 'Penicillium_charlesii' CCGCTGAGCTGCGTCACGTCATGACCTCCATCGGCGAGAAGCTGACCGAC 'Penicillium_georgiense' CTGCTGAGCTGCGTCACGTCATGACCTCCATCGGCGAGAAGCTGACCGAT 'Eupenicillium_cinnamopurpureum' CCGCCGAGCTGCGCCATGTGATGACCTCGATCGGCGAGAAGCTGACCGAC 'Penicillium_parvulum' CCGCCGAGCTGCGCCATGTGATGACCTCGATCGGCGAGAAGCTGACCGAC 'Penicillium_citreonigrum' CCGCTGAGCTGCGCCACGTGATGACCTCCATCGGCGAGAAGCTGACTGAC 'Penicillium_restrictum' CCGCCGAGCTGCGCCACGTTATGACATCCATCGGCGAGAAGCTGACCGAC 'Penicillium_implicatum' CCGCCGAGCTGCGCCACGTCATGACCTCCATCGGCGAGAAGCTGACCGAT 'Eupenicillium_ochrosalmoneum' CTGCCGAGCTGCGCCACGTGATGACCTCGATCGGCGAGAAGCTGACCGAC 'Penicillium_decaturense' CCGCTGAGCTGCGCCACGTCATGACCTCCATCGGCGAGAAGCTGAGCGAT 'Aspergillus_nidulans' CTGCTGAGCTGCGTCACGTCATGACCTCGATCGGTGAGAAGCTCACCGAT 'Aspergillus_oryzae' CTGCCGAATTGCGTCACGTCATGACCTCCATCGGCGAGAAGCTTACCGAT 'Penicillium_viticola' GACGAGGTG 'Penicillium_angulare' GATGAGGTG 'Penicillium_brocae' GACGAGGTG 'Penicillium_adametzii' GATGAAGTG 'Penicillium_sclerotiorum' GATGAGGTG 'Penicillium_multicolor' GACGAGGTG 'Eupenicillium_hirayamae' GACGAAGTG 'Penicillium_thiersii' GATGAGGTG 'Penicillium_glabrum' GATGAGGTC 'Penicillium_purpurascens' GATGAGGTC 'Penicillium_thomii' GATGAGGTC 'Eupenicillium_pinetorum' GATGAAGTC 'Penicillium_spinulosum' GATGAGGTC 'Penicillium_lividum' GATGAGGTG 'Penicillium_astrolabium' GATGAGGTC 'Penicillium_jensenii' GACGAGGTG 'Penicillium_coffeae' GACGAAGTG 'Eupenicillium_idahoense' GACGAGGTG 'Penicillium_griseolum' GACGAGGTG 'Penicillium_chermesinum' GATGAGGTT 'Penicillium_indicum' GATGAGGTT 'Penicillium_charlesii' GACGAGGTG 'Penicillium_georgiense' GATGAGGTT 'Eupenicillium_cinnamopurpureum' GACGAGGTG 'Penicillium_parvulum' GACGAGGTG 'Penicillium_citreonigrum' GACGAGGTG 'Penicillium_restrictum' GACGAGGTG 'Penicillium_implicatum' GACGAGGTG 'Eupenicillium_ochrosalmoneum' GATGAGGTG 'Penicillium_decaturense' GATGAGGTT 'Aspergillus_nidulans' GACGAAGTC 'Aspergillus_oryzae' GACGAAGTT ; END; BEGIN TREES; Title 'Trees from "Fig1.nx"'; LINK Taxa = Taxa; TRANSLATE 1 'Penicillium_viticola', 2 'Penicillium_angulare', 3 'Penicillium_brocae', 4 'Penicillium_adametzii', 5 'Penicillium_sclerotiorum', 6 'Penicillium_multicolor', 7 'Eupenicillium_hirayamae', 8 'Penicillium_thiersii', 9 'Penicillium_glabrum', 10 'Penicillium_purpurascens', 11 'Penicillium_thomii', 12 'Eupenicillium_pinetorum', 13 'Penicillium_spinulosum', 14 'Penicillium_lividum', 15 'Penicillium_astrolabium', 16 'Penicillium_jensenii', 17 'Penicillium_coffeae', 18 'Eupenicillium_idahoense', 19 'Penicillium_griseolum', 20 'Penicillium_chermesinum', 21 'Penicillium_indicum', 22 'Penicillium_charlesii', 23 'Penicillium_georgiense', 24 'Eupenicillium_cinnamopurpureum', 25 'Penicillium_parvulum', 26 'Penicillium_citreonigrum', 27 'Penicillium_restrictum', 28 'Penicillium_implicatum', 29 'Eupenicillium_ochrosalmoneum', 30 'Penicillium_decaturense', 31 'Aspergillus_nidulans', 32 'Aspergillus_oryzae'; TREE 'PAUP 1+' = ((((((((((1,2),4),3),8),((((9,10),11),(12,13)),14)),((5,6),7)),19),((26,27),(28,29))),(18,(24,25))),(15,16),(((17,(((20,21),22),23)),(31,32)),30))[% ] [%unrooted = on ]; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 659; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 659; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 659; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1295239385977; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4980290498411541679; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6253175896405407026; mqVersion 274; checksumv 0 2 1020176517 null getNumChars 659 numChars 659 getNumTaxa 32 numTaxa 32 short true bits 15 states 15 sumSquaresStatesOnly 356322.0 sumSquares 356322.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #4980290498411541679 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4980290498411541679; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 244; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4980290498411541679 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 822.1295238986561.8476093831815584461; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;