#NEXUS [written Sat Aug 23 20:07:24 IST 2014 by Mesquite version 2.75 (build 564) at Subha_PC/192.168.204.48] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=26; TAXLABELS Rhizoctonia_solani_endornavirus_RS002 Rhizoctonia_cerealis_endornavirus_1 Helicobasidium_mompa_endornavirus_1_670 Gremmeniella_abietina_type_B_RNA_virus_XL1 Gremmeniella_abietina_type_B_RNA_virus_XL2 Tuber_aestivum_endornavirus Chalara_elegans_endornavirus Phytophthora_endornavirus_1_OR Vicia_faba_endornavirus Oryza_sativa_endornavirus Oryza_rufipogon_endornavirus Bell_pepper_endornavirus_KS Bell_pepper_endornavirus_YW Persea_americana_endornavirus Grapevine_endophyte_endornavirus Bell_pepper_endornavirus_KY Bell_pepper_endornavirus_Is Phaseolus_vulgaris_endornavirus_1 Phaseolus_vulgaris_endornavirus_2 Peanut_stunt_virus_J Broad_bean_mottle_virus Citrus_leaf_rugose_virus Tobacco_streak_virus_WC Little_cherry_virus_1 Beet_yellows_virus Grapevine_leafroll_associated_virus_1 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "rdrpalignment.nexus"'; DIMENSIONS NCHAR=175; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Rhizoctonia_solani_endornavirus_RS002 HAKLESLMKEDTRINLLEEQKARIIVWQEKAIAAIFSPVFLEAKRRLKEILNNKTIYADGLT---PHEISARIRLAKG-ANRIFESDLSKQDRQTDGPILDVEFAIYEL-LGVHPDVLRTWRTVHDHWRFK--GRK-FSGFGHEMRLTGQATTALGNVIVNLMVHANIVNKQKEH Rhizoctonia_cerealis_endornavirus_1 HNKLESLLKEEP-ITKVQDQKVRIIVWQRKGYAAIFSPVFIEAKKRLKTLLRKDVIYADGYT---PQELSARLRTVTG-STRFFESDMAKQDRQTDQETLDVEFEVYKN-LGVHPRLLSVWRSVHRNWRFK--NAH-MSGNLDGMRMTGQATTAIGNVIVNMAVHADLVINNRDK Helicobasidium_mompa_endornavirus_1_670 HAKLESLLKSNP-IMDWTKEQVRIIVWQSKGKAALFS-VFNEAKNRLKMLLNDKTIYADGLS---PDDLSARLRAVPNDGAWILESDLEKQDKQTEGETLDCEMEIYKRYLKVHYLVVNLWRRVHDLWRYK--GTH-IRGMSDGMRWTGQITTALGNVIVCMLALMLMVILMWSS Gremmeniella_abietina_type_B_RNA_virus_XL1 HYKVENLLKEQV--NDVLDQVGRVIVWNNQNINMFACPIINEAKARLKLLLKPNVVYTDGMS---TPALNAKLGEYK--AKYILEMDLSKQDRQTDRPILEYEWWLVKN-LGVSEKVIDFLSSPIPTFNIH--GSNGETARLPAIHFSGGAMTSLGNEIRNLVLVSDCVQKYVAI Gremmeniella_abietina_type_B_RNA_virus_XL2 HYKVENLLKEQV--NDILDQVGRVIVWNNQNINMFACPIINEAKARLKLLLKPNVVYTDGMS---TPALNAKLGEYK--AKYILEMDLSKQDRQTDRPILEYEWWLVKN-LGVSEKVIDFLSSPIPTFNIH--GSNGETAKLPAIHFSGGAMTSLGNEIRNLVLVSDCVQKYVAI Tuber_aestivum_endornavirus HFKSENLMKEMV--LSATEQIGRVIVWHEQHISSIICPLMQEAKYRLKSVLKTKHVYYDGMN---VTSLNSHLKTLKK-SKHIICLDLSKQDRQTDRPLLETEHELMRL-LGVDPLVIEYLKQAEDKFILR--TSNNISSIRPGMRWTGGEMTAIGNEIRNLLLLADLEAHGLII Chalara_elegans_endornavirus HGKTEQTTKMDEISRWYDDVTTRSIVAAPYAISAIFSQAFMEIKSRFKLALLPKVCYVDGMT---PPEIAAKVRSTGG-FKWAVEDDLSKQDRQTSWDILKIEQRLYHL-LGMDTELVDFYMQCHKAWKWK--GHG-ISGVWDAMRLTGQVTTALGNAITNLVVHNRFYKRNAHS Phytophthora_endornavirus_1_OR HLKLEALLKDQP-VESNQALKARIIVWQAKGICAMYSGTFIQIKKRLKKLLRAEIVYTDGLE---PTEIADVVRGIKD-FSVLIEDDLTRQDSQTDSDTINVEFGVYDL-LGLDRRVAASWRRVHELWRFK--GKD-VRGVWQEMRLTGQATTALGNAVVNLAVHWRLVSQLGPA Vicia_faba_endornavirus HVKTESLLKANP-IMYWRQTQGRIIVWQPKELCALMSPAFIAIKRRLKEVLRDEIVYTDGLT---PDMLSARARTIQ--YDYVFEDDLVIQDRQTDQELIDLEFQVMLD-LGLDINLANLWRLVHNKWRFK--GQH-SWGQLDAMRLTGQATTALGNAITNLCVHSSFVIEHRQA Oryza_sativa_endornavirus HLKLESLLKDKH-ISIMKEQQARIIVWQRKAVCSLFAKLFVRCKDRLKTLLVDHILYVDGLR---PDEISAKLRQISD-VFGFFENDLTKQDRQTDKPILEVEMLMYLM-LGVHPNIISSWRSSHDDWRFK--STN-YWGKSTAMRLTGQATTALGNCITNMQVHSKFVIKNKYW Oryza_rufipogon_endornavirus HLKLESLLKEKH-ISLMKEQQARIIVWQRKAVCGLFAKLFVRCKERLKTLLLDHILYVDGLR---PDEISAKLRQISN-VFGFFENDLTKQDRQTDKPILEVEMLMYLM-LGVHPNIIASWRASHEDWRFK--STN-YWGKSTAMRLTGQATTALGNCITNMQVHSKFVIKNKYW Bell_pepper_endornavirus_KS HLKLESLLKAEP-ASSLKQVKARALLWQCKGYCAIFSHIFKEAKVRLKQMLKPNIVYADGLR---ADELSARVRLTTG-VKYLLENDLAQQDKQTDHEIIKFEMALYKL-LGVHDDVITLWHNSHFNWKYK--SRT-VRGEGDAMRLTGQATTALGNAITNMLVHRRLVNRLGHN Bell_pepper_endornavirus_YW HLKLESLLKSEP-ASSLKQVKARALLWQCKGYCAIFSHIFKEAKVRLKQMLKPNIVYADGLR---ADELSARVRLTTG-VKYLLENDLAQQDKQTDHEIIKFEMALYKV-LGVHDDVITLWHNSHFNWKYK--SRT-VRGEGDAMRLTGQATTALGNAITNMLVHRRLVNRLGHN Persea_americana_endornavirus HLKLESLLKANP-INVTKEQQARVIVWQRKCVCALYARLFLKIKSRLKEILHEKIVYADGLT---PDDISARVRLCNN-VNGFFENDLTKQDRQTDRDIINMEMLVYIV-LGANPSIISSWREMHEVWRFK--SAN-YWGEGKEMRLSGQATTALGNVITNLQVHCKFVKKNSIS Grapevine_endophyte_endornavirus HGKTEQTTKMKTT-RWFDDVVTRSIVAAPYAVSALFADIFLETKQRLKAVLGPKIFYSDGST---PLDLAAVIRSSDD-FTYCVEDDLTQQDRQVDHQLIAVEMELYRL-LGVDGNVLAFYRMCHEKWSWK--GHG-ISGVWDAMRLSGQVTTALGNAITNMIVHNRFMLRNQNR Bell_pepper_endornavirus_KY HLKLESLLKAEP-ASSLKQVKARALLWQCKGYCAIFSHIFKEAKVRLKQMLKPNIVYADGLR---ADELSARVRLTTG-VKYLLENDLAQQDKQTDHEIIKFEMALYKL-LGVHDDVITLWHNSHFNWKYK--SRT-VRGEGDAMRLTGQATTALGNAITNMLVHRRLVNRLGHN Bell_pepper_endornavirus_Is HLKLESLLKAEP-ASSLKQVKARALLWQCKGYCAIFSHIFKEAKVRLKQMLKPNIVYADGLR---ADELSARVRLTTG-VKYLLENDLAQQDKQTDHEIIKFEMALYKL-LGVHDDVITLWHNSHFNWKYK--SRT-VRGEGDAMRLTGQATTALGNAITNMLVHRRLVNRLGHN Phaseolus_vulgaris_endornavirus_1 HLKLESLLKDNP-IDYWRQQQARIIVWQRKAVCAVYTSVFVEAKRRLKAILHDKIVYADGLR---PDELSARLRLCNS-VAGFFENDLTKQDRQTDKPIIDAEMIIYDM-LGVHANVIASWREMHETWMFK--SDN-YWGTGQAMRLTGQATTAIGNVLTNMQVHAKFIHKHWNI Phaseolus_vulgaris_endornavirus_2 HLKLESLLKSEP-ASNLKQVKARALVWQCKGYCAIFSHVFKEVKVRLKDLLRPEIVYSDGLR---ADELAARVRLTTN-VKFLLENDLAQQDKQTDHEIIKVEMEIYKL-LGVCPHLVDLWKNCHHSWAYK--SRT-VAGVGDAMRLTGQATTAIGNAITNMLVHRRLVKTLGHN Peanut_stunt_virus_J HMVKSDVKPVVADTLNVDRPVPATITFHAKGITSQFSPLFISLFERFQRCLRGRVVVPVGK----ISSLEMDNFSVLN--KHCLEIDLSKFDKSQGELHLMIQEEILNL-LGCPVDISKWWCDFHRYSYIK-DKRAGVSMPISFQRRTGDAFTYFGNTLVTMALFSWCYDTDQFD Broad_bean_mottle_virus HMIKSDVKPTVTDTLHVERDVPATITFHGKGVTSCFSPFFTACFEKFSLALRESIYVPIGK----ISSLELKSKALNN--KFFLEADLSKFDKSQGELHLEFQRLILIN-LGFPVPLTNWWCDFHRSILSRWTLRPGVSIPLLSKTNRG-CFHLLWEHFSDNAMMAYCFDMSTAE Citrus_leaf_rugose_virus HMVKTIVKPVEDNSLKFERPLCATITYHKKGIVMQSSPLFLSAMSRLFYVLKSKIHIPSGK----WHQLFTLDAAAFDAAKWFKEVDFSKFDKSQGELHHKVQKMIFDL-LKLPPEFVEMWFTSHERSYIT-DRDTGVGFAVDFQRRTGDANTYLGNTLVTLICLARVYDLCDPK Tobacco_streak_virus_WC HMIKTTLKPVEEDNLHIERPIPATITYHKKGVVMMTSPYFLCAMVRLLYVLKSKFVVPTGK----YHQIFQMNPELLKHSKEFKEIDFSKFDKSQGRLHHDVQFRLFLA-LGIPEHFVTTWFNSHEKSYIR-DRDCGIGFSVDYQRRTGDACTYLGNTLVTLSVLSYVYDLSNPN Little_cherry_virus_1 LMVKGDMKPKLDMSGVSEYSPASNIIYYQTMINMFFSPIFLEIFGRIKYCLGDKVILFSGMNLDEMGDLLESRLCYPLNSYNFVEVDFSKFDKSQGHVIKLYEELVYKI-FKFSPNLYDNFKLSEYFCRAS-ATCG-VNLDLYCQRRTGSPNTWLSNSLATLAMLASVYDLDDID Beet_yellows_virus LMVKRDAKVKLDSSCLVKHPPAQNIMFHRKAVNAIFSPCFDEFKNRVITCTNSNIVFFTEMTNSTLASIAKEMLG-SEHVYNVGEIDFSKFDKSQDAFIKSFERTLYSA-FGFDEDLLDVWMQGEYTSNAT-TLDGQLSFSVDNQRKSGASNTWIGNSIETLGILSMFYYTNRFK Grapevine_leafroll_associated_virus_1 LMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLHSKVMAYHGMSTDDFSREVCERLR-DISGYYVYELDISKYDKSQGACMKDVERLILIG-LGVAESVVDAFFCGEYDSVVT-MGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGFEPD ; END; BEGIN TREES; Title RdRp_ML_tree; LINK Taxa = Taxa; TRANSLATE 1 Rhizoctonia_solani_endornavirus_RS002, 2 Rhizoctonia_cerealis_endornavirus_1, 3 Helicobasidium_mompa_endornavirus_1_670, 4 Gremmeniella_abietina_type_B_RNA_virus_XL1, 5 Gremmeniella_abietina_type_B_RNA_virus_XL2, 6 Tuber_aestivum_endornavirus, 7 Chalara_elegans_endornavirus, 8 Phytophthora_endornavirus_1_OR, 9 Vicia_faba_endornavirus, 10 Oryza_sativa_endornavirus, 11 Oryza_rufipogon_endornavirus, 12 Bell_pepper_endornavirus_KS, 13 Bell_pepper_endornavirus_YW, 14 Persea_americana_endornavirus, 15 Grapevine_endophyte_endornavirus, 16 Bell_pepper_endornavirus_KY, 17 Bell_pepper_endornavirus_Is, 18 Phaseolus_vulgaris_endornavirus_1, 19 Phaseolus_vulgaris_endornavirus_2, 20 Peanut_stunt_virus_J, 21 Broad_bean_mottle_virus, 22 Citrus_leaf_rugose_virus, 23 Tobacco_streak_virus_WC, 24 Little_cherry_virus_1, 25 Beet_yellows_virus, 26 Grapevine_leafroll_associated_virus_1; TREE UNTITLED = ((((((((((10:0.0280203,11:0.02457489)1.0000:0.31989352,14:0.28158634)0.7680:0.10716325,18:0.17823566)0.9680:0.24411127,(1:0.28413141,(2:0.38843135,3:0.69390572)0.5620:0.19245685)0.5820:0.19485409)0.3180:0.15287621,(19:0.10947735,(13:0.00656109,(16:0.0,(12:0.0,17:0.0)0.3120:0.0)0.7600:0.00649667)1.0000:0.14814143)0.9970:0.45004363)0.2140:0.09538058,8:0.80045494)0.2080:0.0392935,9:0.64050733)0.7240:0.18577916,(7:0.36218095,15:0.33109211)0.9890:0.54533719)0.6910:0.29214364,(6:0.64437399,(4:0.0,5:0.0129735)1.0000:0.75063368)0.9910:0.85524219)1.0000:1.55817503,(((24:0.957523,25:0.89194186)0.7180:0.38147761,26:0.9462754)0.8520:0.46256013,((20:0.08699778,21:1.15995767)0.9920:0.65662076,(22:0.28714373,23:0.36510235)0.9530:0.50649479)0.9250:0.66608965)1.0000:0.92219668); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 175; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 175; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 175; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1408804644550; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 55185990880710917; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6413095409481793085; mqVersion 275; checksumv 0 3 595405357 null getNumChars 175 numChars 175 getNumTaxa 26 numTaxa 26 short false bits 1048575 states 1048575 sumSquaresStatesOnly 4.9192857369796E13 sumSquares 4.9192857369796E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 331; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 649; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #55185990880710917 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #55185990880710917; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1035 582; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #55185990880710917 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 884.1408783908209.2350639359022372711; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1035 582; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6413095409481793085 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1035 582; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #6413095409481793085 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1035 582; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;