#NEXUS [written Sun Apr 13 16:03:17 JST 2014 by Mesquite version 2.75 (build 566) at KAGEYAMA-SHARE/127.0.0.1] BEGIN TAXA; TITLE 'Taxa_lettuce_ITS'; DIMENSIONS NTAX=32; TAXLABELS Phytophthora_austrocedri Phytophthora_CBS137103 'Phytophthora sp. 2010-1-1 ' Phytophthora_sp._NBRC110062 'Phytophthora sp. 2010-4-1' 'Phytophthora sp. 2013-4-1 ' 'Phytophthora sp. 2011-1-1 ' 'Phytophthora sp. 2013-1-1 ' Phytophthora_sp._NBRC110061 Phytophthora_brassicae_ Phytophthora_sp._MAFF239556 Phytophthora_cichorii_ Phytophthora_lactucae_ Phytophthora_dauci_ Phytophthora_taxon_castitis_ Phytophthora_primulae_ Phytophthora_porri_ Phytophthora_taxon_parsley_ Phytophthora_cryptogea_ Phytophthora_drechsleri_ Phytophthora_erythroseptica_ Phytophthora_foliorum_ Phytophthora_hibernalis_ Phytophthora_lateralis_ Phytophthroa_megasperma_ Phytophthora_medicaginis_ Phytophthora_obscura_ Phytophthora_ramorum_ Phytophthora_sansomeana_ Phytophthroa_syringae_ Phytophthora_trifolli_ Phytophthora_sp._kelmania_ ; END; BEGIN CHARACTERS; TITLE 'Character Matrix_lettuce_ITS'; DIMENSIONS NCHAR=722; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Phytophthora_austrocedri CCACGTGAACCGTATCAAAACTTTTATTGGGGGCTTCTGCTGGCTTCGGCTGGTCTGGGTGGCGGCTCTATCATGGCCGCTCTGGGCTTCTTGGGAGTTAGGCCCCATTAACCATTCTTAATACTGAACATACTGTGGGGCAAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGACGTGAAGTGTCTTGCGACTGGGCTTCGGCTCGGCTGCGAGTCCTTTGAAATGTACAGAACTGTACTTCTCTTTGCTCGAAAAGCGTTATATTACGGTTGTGGGGCGTGCTTACTGGCAAGTCGGCGACCGGTTTGTTAGCTGCGGCGTATGGGGGAGTGTCGATTCGCGGTATGATCGGCTTCGGCTGGACAGCGCTTATTGGTGCTTTTCCTGCTGTGGCGGTACGAACTGGTGAACCGTAGCTGTATTGCTTGGCATTTGAACCGACGATGTGGTGCGAAGTAGAGTGGCGGTTGTTCCGGCGCAAGGCTGTCGGGAATTGTGTCAGTGCGACTTCGGTTGT Phytophthora_CBS137103 CCACGTGAACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGCGGCGGCTCTAGCGCGAGCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGATGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGGATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGCGGCTTGGCGTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT 'Phytophthora sp. 2010-1-1 ' CCACGTGAACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGCGGCGGCTCCAGCGCGAGCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGATGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGGATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGCGGCTTGGCGTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT Phytophthora_sp._NBRC110062 CCACGTGAACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGCGGCGGCTCCAGCGCGAGCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGATGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGGATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGCGGCTTGGCGTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT 'Phytophthora sp. 2010-4-1' CCACGTGAACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGCGGCGGCTCTAGCGCGAGCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGATGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGGATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGCGGCTTGGCGTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT 'Phytophthora sp. 2013-4-1 ' CCACGTGAACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGCGGCGGCTCTAGCGCGAGCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGATGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGGATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGCGGCTTGGCGTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT 'Phytophthora sp. 2011-1-1 ' CCACGTGAACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGCGGCGGCTCTAGCGCGAGCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGATGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGGATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGCGGCTTGGCGTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT 'Phytophthora sp. 2013-1-1 ' CCACGTGAACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGCGGCGGCTCTAGCGCGAGCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGATGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGGATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGCGGCTTGGCGTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT Phytophthora_sp._NBRC110061 CCACGTGAACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGCGGCGGCTCTAGCGCGAGCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGATGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGGATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGCGGCTTGGCGTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT Phytophthora_brassicae_ TCCACGTGACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTAGACTGGGCGGCGGCTCTAGCGCGACCGTTCTGGGCTTCTTGGGGCTAGTAGCTTATTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGATGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATAGATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGTAGCTTGGCTTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT Phytophthora_sp._MAFF239556 CCACGTGAACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGCGGCGGCTCTAGCGCGAGCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGATGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGGATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGCGGCTTGGCGTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT Phytophthora_cichorii_ CCACGTGAACCGTATCAACCTTAATATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGTGGCAGCTCTAGCGCGAGCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGTAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGCCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGGCAGACGTGAAGTGTCTTGCGACTGGGCTTCGGTCTAGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGAATGTTTTTCTTACTGCGGCGGATAGACTGGTGAACCGTAGCTGTGTGGCTTGGCTTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT Phytophthora_lactucae_ CCACGTGAACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGCGGCGGCTCTAGCGCGAGCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGATGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGGATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGCGGCTTGGCGTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT Phytophthora_dauci_ CCACGTGAACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGCGGCGGCTCTAGCGCGACCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGATGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGAATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGCAGCTTGGCTTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGTGACCTCGGTTGT Phytophthora_taxon_castitis_ CCACGTGAACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGCGGCGGCTCTAGCGCGACCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGACGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGGATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGCGGCTTGGCTTTTGAACAGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT Phytophthora_primulae_ CCCCGTGAACCGTATCAACCTTTTTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGTGGCGGCTCTAGCGCGACCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGCCAGATGTGAAGTGTCTTGCGACTGGACTTTGATCTAGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTATGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTAATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATAAATGTTTTTCTTACTGTGGCGGATAGACTGGTGAACCGTAGCTGTGTAGCTTGGCCTTTGAACCGGTGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT Phytophthora_porri_ CCACGTGAACCGTATCAACCTGATTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGCGGCGGCTCTAGCGCGACCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGGCAGATGTGAAGTGTCTTGCGACTGGGCTTCGGTCTGGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATGAATGTTTTTCTTACTGCGGCGGATGGACTGGTGAACCGTAGCTGTGCMGCTTGGCTTTTGAACCGGCGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGTGACCTCGGTTGT Phytophthora_taxon_parsley_ CCCCGTGAACCGTATCAACCTTTTTATTGGGGGCTGCTGCTGGCTTCGGCTGGACTGGGTGGCGGCTCTAGCGCGACCGTTCTGGGCTTCTTGGGGCTAGTAGCTTTTTAACCATTCTTAATTACTGAAATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGCCAGATGTGAAGTGTCTTGCGACTGGACTTTGATCTAGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCGGTTGTGGGGCTGCCTGTATGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTGGAGAAGTGTTTAATTCGCGGTATGGTTGGCTTCGGCTGAACAAGCGCTTATAAATGTTTTTCTTACTGTGGCGGATAGACTGGTGAACCGTAGCTGTGTAGCTTGGCCTTTGAACCGGTGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGGCTGTCGGGAATTGTGCCGTTGCGACCTCGGTTGT Phytophthora_cryptogea_ CCACGTGAACCGTATCAACCTTTAATTTGGGGGCTTCCGCGGCCGTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCCGCTTGGGCCTCGCCTGGGCTAGTAGCGTATTAACCATTCCTAATACTGAATATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTACACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTATGGAGGAGTGTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAGACGCTTATGGTGCTTTTCCTGCTGTGGCTGGATGGACTGGTGAACCGTAGCTGTGCTGCTTGGCGTTTGAACCGGCGGTGTGGTGCGAAGTAGGGTGTCTGTTCTGGCGTAAGCTGCTGGACGGGAACTGTGTGCGCTTCGGCGCGCATCA Phytophthora_drechsleri_ CCACGTGAACCGTATCAACCTTTAAATTGGGGGCTTCCGCGGCCGCTCGGCTGGCTGGGTGGCGGCTCTATCATGGCCGCCTGGGCCTCGCCTGGGTTAGTAGCGTATTAACCATTCCTAATACTGAAAAAACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTTAAATGTACTACACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTATGGAGGAGTGTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAGACGCTTATGGTGCTTTTTCTGCTGCGGCGGGATGGACTGGTGAACCGTAGCTGTGCTGCTTGGCGTTTGAACCGGCGGTATTGTGCGAAGTAGGGTGTCTGTCTCGGCGCAAGCTGGTGGGCGGGAACTGTGTGCGCTTCGGCGTGCATCA Phytophthora_erythroseptica_ CCACGTGAACCGTATCAACCTTTAAATTGGGGGCTTCCGCGGCCGTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCCGCTTGGGCCTCGCCTGGGCTAGTAGCGTATTAACCATTCCTAATACTGAATATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTACACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTATGGAGGAGTGTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAGACGCTTATGGTGCTTTTCCTGCTGTGGCTGGATGGACTGGTGAACCGTAGCTGTGCTGCTTGGCGTTTGAACCGGCGGTGTGGTGCGAAGTAGGGTGTCTGTTCCGGCGTAAGCTGGTGGACGGGAACTGTGTGCGCTTCGGCGCGCATCA Phytophthora_foliorum_ CCACGTGAACCGTATCAACACTTAGTTGGGGGCTGCTGTTCGGCTTTCGGCTGGCTGGGCGGCGGCTCTATCATGGGCGCCTGGGCCTTCTCTGAGCTAGTAGCCCATTAACCATTCCTAATACTGAACATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGGCAGACGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTGAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTTGTGGTTGTGGGCTGCCTGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGCGTATGGAGGAGTGTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAGGCGCTTATGGTGCTTTTCCTGCTGTGGCGGTACGGACTGGTGAACCGTAGCTGTGCGGCTTGGCTTTTGAATCGGCGATGTGGTGCGAAGTAGAGTGGCTGTTCGGCGCAAGCTGGGCGGTCGGGAAATGTGTTGGCGGCTTCGGCTTGCC Phytophthora_hibernalis_ CCACGTGAACCGTATCAACCTTTAGTTGGGGGCTTCTGTTCGGCTTTTTGCTGGCTGGGCGGCGGCTCTATCATGGGCGCCTGGGCCTTCTCTGAGCTAGTAGTCTTTTAACCTTTCTTAATACTGAATATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGGCAGACGTGAAGTGTCTTGCGATTGGTCTTCGGGCCGGCTGCGAGTCCTTTTAAATGTACAGAACGGTACTTCTCTTTGCTCGAAAAGCATAATGGAATGGTTGTGGAAGCTTCCCGGTGGCAAGTCGGCGACTGGTTTGTCTGCTACGGCGTATGGAGGAATGTCGATTCGCGGTATGGTTAGCTTCGGCTGAACAAGCGCTTATGGTGTTTTTCCTGCTGTGGTGGTAATGACTGGTGAACCGTAGCTATGCAGATTGGCCTTTGAACTGAGGATGTTGTGTGAAGTAGAGTGGCGGTTTGGCGCAAGCTGGGCTGTCGGGGAATGTGTTGGCGGCTTCGGCTGTTA Phytophthora_lateralis_ CCACGTGAACCGTATCAAAACTTAGTTGGGGGCTTCTGTTCGGCTTTCGGCTGGCTGGGCGGCGGCTCTATCATGGGCGCATGGGCCTTCTCTGAGCTAGTAGCCCTTTAACCATTCCTAATACTGAATATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGGCAGACGTGAAGTGTCTTGCGATTGGTCTTCGGGCCGGCTGCGAGTCCTTTGAAATGTACAGAACTGTACTTCTCTTTGCTCGAAAAGCATGACGTT-GTGGTTGTGGGCTGTCCGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGCGTATGGAGGAGTGTCGATTCGCGGTATGGTTAGCTTCGGCTGAACAAGCGCTTATGGTGTTTTTTCTGCTGTGGCGGTAATGACTGGTGAACCGTAGCTATGCAGCTTGGCTTTTGAACCGACGGTGTTGTGCGAAGTAGAGTGGCGGTTTGGCGCAAGCTGGGCTGTCGGGAAATGTGTTGGCAGCTTCGGCTGTTA Phytophthroa_megasperma_ CCACGTGAACCGTATCAACCCTAAATTTGGGGGCTTGCTCGTGTGTGGCCTGTAATGGGGGCGGGCTCTATCATGGAGCGTTTGGGCTTCCTCGAGCTAGTGCTATCTTAACCTTTCTTAATACTGAACATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGAGGATATGCAGATGTGAAGTGTCTTGCTAGCGGTCTTTCGAGTCTGCCGGTGAGTCCTTTTAAATGTACTGAACTGTACTCTTCTTTGCGCGAAAAGCGTGGCGTTGCGGTTGTGGGGCTGCCCGTGTGGCCAGTCGGCGACCGGTTTGTTAGCTGTGGCGTTTGGAGGAGTGTCGATTCGCGGTATGGTTGGCTTCGGCTAAACAACTGCTTATGGTGCTTTTCCTGTCATGGCGGTATGAACTGGTGAACCGTAGCTGTGTGGCTTGGCTTTTGAACCGGCTTTGCTTTGCGAAGTAGTGTGACGGCTTCGGCTGTCGAGCCATTTTGGGAACTGTGTGTGCGGCTTCGTGCTGCG Phytophthora_medicaginis_ CCACGTGAACCGTATCAACCTTTAAATTGGGGGCTTCCGCGGCCGTTCGGCTGACTGGGTGGCGGCTCTATCATGGCCGCTTGGGCCTCGCTTGGGCTAGTAGCTTCTTAACCATTCCTAATACTGAATATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTATGGAGGAGTGTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAGACGCTTATGGTGCTTTTCCTGCTGTGGTGGGACGGACTGGTGAACCGTAGCTGTACTGCTTGGCGTTTGAACTGGCGGTGTGGTGCGAAGTAGGGTGTCTGTTCCGGCGCAAGCTGGTGGGCGGGAAGTGTGTGCGCTTCGGCGCGCATCA Phytophthora_obscura_ CCACGTGAACCGTATCAAAACCTTTATTGGGGGCTTCTGCTGGCTTCGGCTGGGCTGGGTGGCGGCTCTATCATGGCCGCTCTGGGCTTCCTGGAGTTAGTAGCTCATTAACCATTCTTAATACTGAACATACTGTGGGGCGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGAT-ACAGACGTGAAGTGTCTTGCGACTGGGCTTCGGCTCGGCTGCGAGTCCTTTGAAATGTACTGAACTGTACTTCTCTTTGCTCGAAAAGCGTAATATTACGGTTGTGGGGCTGCTTGTGTGGCATGTCGGCGACCGGTTTGTTAGCTGCGGCGTATGGAGGAGTGTCGATTCGCGGTATGATCGGCTTCGGCTGGGCAGCGCTTATTGGTGCTTTTCTTGCTGTGGCGGTACGAACTGGTGAACCGTAGCTATGTTGCTTGGCTTTTGAACCGGCGATGTGGTGCGAAGTAGAGTGGCGGTTGTTCCAGCGCAAGGCTGTCGGGAATTGTGTCTGTGCGACTTCGGTTGT Phytophthora_ramorum_ CCACGTGAACCGTATCAAAACTTAGTTGGGGGCTTCTGTTCGGCTTTCGGCTGGCTGGGCGGCGGCTCTATCATGGGCGCTTGAGCCTTCTCTGAGCTAGTAGCCCATTAACCATTCCTAATACTGAATATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGGCAGACGTGAAGTGTCTTGCGATTGGTCTTCGGGCCGGCTGCGAGTCCTTTGAAATGTACAGAACTGTACTTCTCTTTGCTCGAAAAGCATGACGTT-GTGGTTGTGGGCTGCCCGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGCGTATGGAGGAGTGTCGATTCGCGGTATGGTTAGCTTCGGCTGAACAAGCGCTTATGGTGCTTTTTCTGCTGTGGCGGTAATGACTGGTGAACCGTAGCTGTGCAGCTTGGCTTTTGAATCGACGGTGTTGTGCGAAGTAGAGTGGCGGTTCGGCGCAAGCTGGGCTGTCGGGAAATGTGTTGGCGGCTTCGGCTGCTA Phytophthora_sansomeana_ CCACGTGAACCGTATCAACCTTTAAATTGGGGGCTTCCGCGGCCGTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCCGCTTGGGTCTCGCCTGGGCTAGTAGCTTCTTAACCATTCCTAAGACTGAATATACTGTGGGGAGAAAGTCTCTGCTTTTGACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTATGGAGGAGTGTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAGACGCTTATGGTGCTTTTCCTGCTGTGGCGGGACGGACTGGTGAACCGTAGCTGTGCTGCTTGGCGTTTGAACCGGCGGTGTGGTGCGAAGTAGGGTGTCTGTTCCGGCGCAAGCTGGGGGACGGGAACTGTGTGCGCTTCGGCGCGCATCA Phytophthroa_syringae_ CCACGTGAACCGTATCAAAACTTTTATTGGGGGCTTCTGCTGGCTTCGGCTGGATTGGGTGGCGGCTCTATCATGGCCGCTCTGAGCTTCCTGGAGCTAGTAGCCCATTAACCATTCTTAATACTGAACAAACTGTGGGGCGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGACAGACGTGAAGTGTCTTGCGACTGGGCTTCGGCTCGGCTGCGAGTCCTTTTAAATGTACAGAACTGTACTTCTCTTTGCTCGAAAAGCGTTATATTACGGTTGTGGGGCTGCCTGTGCGGCAAGTCGGCGACCGGTTTGTTAACTGCGGCGTATGGAGGAGTGTCGATTCGCGGTATGGATGGCTTCGGCTGAACTGCGCTTATTGATACTTTTCCTGCTGTGGTGGTACGAACTGGTGAACCGTAGCTGTGTTGCTTGGCTTTTGAACTGGCGATGTGGTGCGAAGTAGAGTGACGGTTGTTCCGGCGCAAGACTGTCGGGAATTGTGTCTGTGCGACTTCGGTTGG Phytophthora_trifolli_ CCACGTGAACCGTATCAACCTTTAAATTGGGAGCTTTCGCGGCCGTTTGGCTGGTTGGGCGGCGGCTCTATCATGGCCGCTTGGGCCTCGCTTGGGCTAGTAGCTTCTTAACCATTCCTAATACTGAATATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGGCTGCCTGTGTGGCATGTCGGCGACTGGTTTGTCTGCTGCAGCGTATGGAGGAGTGTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAGACGCTTATGGTGCTTTTCCTGCTGTGGTAGTATGGACTGGTGAACCGTAGCTGTGCTGCTTGGCGTTTGAACTGGCGGTGTGGTGCGAAGTAGGGTGTCTGTTCCGGCGCAAGCTGGTGGGCGGGAAATGTGTGCGCTTCGGCGCGCATCA Phytophthora_sp._kelmania_ CCACGTGAACCGTATCAACCTTTAAATTGGGGGCTTCCGCGGCCGCTCGGCTGGCTGGGTGGCGGCTCTATCATGGCCGCTTGGGCCTCGCCTGGGCTAGTAGCGTATTAACCATTCCTAATACTGAATATACTGTGGGGAGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTACACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTATGGAGGAGTGTCGATTCGCGGTATGATCGGCTTCGGCTGAACAGACGCTTATGGTGCTTTTCCTGCTGTGGCTGGATGGACTGGTGAACCGTAGCTGTGCTGCTTGGCTTTTGAACCGGCGGTGTGGTGCGAAGTAGGGTGTCTGTTCCGGCGCAAGCTGGTGGACGGGAACTGTGTGCGCTTCGGCGCGCATCA ; END; Begin PAUP; Set Criterion = Likelihood; LSet Nst = 6 BaseFreq = Estimate RMatrix = Estimate RClass = ( a b a a e a ) Rates = Gamma Shape = Estimate NCat = 8; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 722; END; BEGIN TREES; Title 'Trees from "MP_tree.tre"_lettuce_ITS'; LINK Taxa = 'Taxa_lettuce_ITS'; TRANSLATE 1 Phytophthora_austrocedri, 2 Phytophthora_CBS137103, 3 'Phytophthora sp. 2010-1-1 ', 4 Phytophthora_sp._NBRC110062, 5 'Phytophthora sp. 2010-4-1', 6 'Phytophthora sp. 2013-4-1 ', 7 'Phytophthora sp. 2011-1-1 ', 8 'Phytophthora sp. 2013-1-1 ', 9 Phytophthora_sp._NBRC110061, 10 Phytophthora_brassicae_, 11 Phytophthora_sp._MAFF239556, 12 Phytophthora_cichorii_, 13 Phytophthora_lactucae_, 14 Phytophthora_dauci_, 15 Phytophthora_taxon_castitis_, 16 Phytophthora_primulae_, 17 Phytophthora_porri_, 18 Phytophthora_taxon_parsley_, 19 Phytophthora_cryptogea_, 20 Phytophthora_drechsleri_, 21 Phytophthora_erythroseptica_, 22 Phytophthora_foliorum_, 23 Phytophthora_hibernalis_, 24 Phytophthora_lateralis_, 25 Phytophthroa_megasperma_, 26 Phytophthora_medicaginis_, 27 Phytophthora_obscura_, 28 Phytophthora_ramorum_, 29 Phytophthora_sansomeana_, 30 Phytophthroa_syringae_, 31 Phytophthora_trifolli_, 32 Phytophthora_sp._kelmania_; TREE PAUP_8 = (1:23.0,(((((((2:0.0,(3:0.0,4:0.0):1.0,5:0.0,6:0.0,7:0.0,8:0.0,9:0.0,11:0.0,13:0.0):2.0,15:2.0):1.0,(14:0.0,17:0.0):2.0):1.0,10:10.0):2.0,(12:8.0,(16:0.0,18:0.0):12.0):3.0):55.0,(((((19:3.0,21:0.0):1.0,(20:14.0,32:3.0):1.0):4.0,((26:3.0,31:10.0):6.0,29:4.0):1.0):29.0,(22:6.0,((23:41.0,24:2.0):6.0,28:3.0):20.0):32.0):34.0,25:86.0):32.0):35.0,30:12.0):6.0,27:12.0); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 722; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 722; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1397372597421; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4764147874809331207; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6274372257723904148; mqVersion 275; checksumv 0 3 1406592833 null getNumChars 722 numChars 722 getNumTaxa 32 numTaxa 32 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 570489.0 sumSquares -4.6116860184268913E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 319; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1206 813; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #4764147874809331207 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4764147874809331207; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 231; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 887 746; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4764147874809331207 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1089.1397371522015.1599571049985064399; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 887 746; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(25:43.0,(((22:6.0,(28:3.0,(23:41.0,24:2.0):6.0):20.0):32.0,((29:4.0,(26:3.0,31:10.0):6.0):1.0,((19:3.0,21:0.0):1.0,(20:14.0,32:3.0):1.0):4.0):29.0):34.0,((30:12.0,(1:23.0,27:12.0):6.0):35.0,((12:8.0,(16:0.0,18:0.0):12.0):3.0,(10:10.0,((14:0.0,17:0.0):2.0,(15:2.0,(2:0.0,5:0.0,6:0.0,7:0.0,8:0.0,9:0.0,11:0.0,13:0.0,(3:0.0,4:0.0):1.0):2.0):1.0):1.0):2.0):55.0):32.0):43.0);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;