#NEXUS [written Thu Jul 02 20:53:14 JST 2015 by Mesquite version 3.01 (build 658) at T_ORIHARA/192.168.13.100] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS 'Uncultured ECM of Lithocarpus densiflorus USA, CA DQ273368' Chamonixia_caespitosa_USA__HQ647124 'Chamonixia caespitosa JPN, Nagano KPM-NC 18070 KP222907' 'Chamonixia caespitosa JPN, Nagano KPM-NC 18071 KP222908' 'Uncultured ECM of Tsuga heterophylla, NA FJ152519' Chamonixia_caespitosa_USA__OSC_118291__EU834197 Chamonixia_caespitosa_USA__Trappe_12656__EU846310 'Chamonixia caespitosa GERMANY, Bavaria 92/83 DQ534565' 'Chamonixia caespitosa POLAND KRA F-2013-38 KT001255' 'Chamonixia caespitosa POLAND KRA F-2014-113 KT001257' 'Chamonixia caespitosa POLAND KRA F-2013-60 KT001258' 'Chamonixia caespitosa POLAND KRA F-2014-110 KT001259' Chamonixia_caespitosa_SWEDEN__UDB001774 Chamonixia_caespitosa_USA__OSC_117036__EU834198 Chamonixia_caespitosa_USA__Trappe_12768__EU852804 'Chamonixia caespitosa USA Trappe 10517 (isolate p693i) EU669385' 'Chamonixia caespitosa USA OSC 117571 (isolate p071i) EU669208' Chamonixia_caespitosa_USA__OSC_117034__EU846243 'Uncultured ECM of Tsuga heterophylla, NA FJ152518' 'Uncultured ECM, CANADA, BC EU597022 ' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=516; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Uncultured ECM of Lithocarpus densiflorus USA, CA DQ273368' GATCATTAATGAAGAC--AAAGACTGTTGCTGGCTAGG-TGATTCT-AGCACGTGCACGTC-ACTTTTCACACCTGTGCACCTATTGTAGATCGCA------A-GA-TCTATGT-CATATCAATTGTATGTCTATAGAATGT--CAAGTACAACTTTCAGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATACGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAAC---AA-----GATTATTGGCTTGGACTTGGGATTTGCTGGCTAGTCAGCTTTCCTTAAATGCATTAGCAAATCGATC--GACGGCACGGCCTCTGATGATCGTTGGAAGCGTTAT-GGAAAGTTTGCTTATAATT--GGGTTGTGGGCTGGAA-GTT-ATT------TTGACCTCAAATCAGGTAGGACTACCCGCT Chamonixia_caespitosa_USA__HQ647124 GATCATTATTGAATACACAA-GACTGTCGCTGGCTAGG-TCATTCTTAGCATGTGCACGTCCACTTTCCACACTTGTGCACCAATTGTAGAT--AATGAAA-AGGA-TCTATGTTCTCATCTAATGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTATCAAC-ATAG-CTTT-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAA-GAAGCTTGCTTT-AATT--GAAT-TTGAATT???????????????????????????????????????????????? 'Chamonixia caespitosa JPN, Nagano KPM-NC 18070 KP222907' GATCATTATTGAATACACAA-GACTGTCGCTGGCTAGG-TCATTCTTAGCATGTGCACGTCCACTTTCCACACTTGTGCACCAATTGTAGAT--AATGAAA-AGGA-TCTATGTTCTCATCTAATGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTATCAAC-ATAG-CTTT-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAA-GAAGCTTGCTTT-AATT--GAAT-TTGAATTTGAA-TTC-ATTACCA--TTGACCTCAAATCAGGTAGGACTACCCGCT 'Chamonixia caespitosa JPN, Nagano KPM-NC 18071 KP222908' GATCATTATTGAATACACAA-GACTGTCGCTGGCTAGG-TCATTCTTAGCATGTGCACGTCCACTTTCCACACTTGTGCACCAATTGTAGAT--AATGAAA-AGGA-TCTATGTTCTCATCTAATGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTATCAAC-ATAG-CTTT-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAA-GAAGCTTGCTTT-AATT--GAAT-TTGAATTTGAA-TTC-ATTACCA--TTGACCTCAAATCAGGTAGGACTACCCGCT 'Uncultured ECM of Tsuga heterophylla, NA FJ152519' GATCATTATTGAATACACAA-GACTGTCGCTGGCTAGG-TCATTCTTAGCATGTGCACGTCCACTTTCCACACTTGTGCACCAATTGTAGAT--AACGAAA-AGGA-TCTATGTTCTCATCTAATGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTATCAAC-ATAG-CTTT-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAA-GAAGCTTGCTTT-AATT--GAAT-TTGAATTTGAA-TTC-ATTACCA--TTGACCTCAAATCAGGTAGGACTACCCGCT Chamonixia_caespitosa_USA__OSC_118291__EU834197 GATCATTATTGAATACACAA-GACTGTCGCTGGCTAGG-TCATTCTTAGCATGTGCACGTCCACTTTCCACACTTGTGCACCAATTGTAGAT--AACGAAA-AGGA-TCTATGTTCTCATCTAATGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTATCAAC-ATAG-CTTT-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAA-GAAGCTTGCTTT-AATT--GAAT-TTGAATTTGAA-TTC-ATTACCA--TT???????????????????????????? Chamonixia_caespitosa_USA__Trappe_12656__EU846310 ???????????????????????????????????????????????AGCATGTGCACGTCCACTTTCCACACTTGTGCACCAATTGTAGAT--AACGAAA-AGGA-TCTATGTTCTCATCTAATGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTATCAAC-ATAG-CTTT-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAA-GAAGCTTGCTTT-AATT--GAAT-TTGAATTTGAA-TTC-ATTACCA--TTGACCTCAAATCAGGTAGGACTACCCGCT 'Chamonixia caespitosa GERMANY, Bavaria 92/83 DQ534565' GA-CATTATTGAATACACAA-GACTGTCGCTGGCTAGG-TCATTCTTAGCATGTGCACGTCCACTTTCCACACTTGTGCACCAATTGTAGAT--AACGAGA-AGGA-TCTATGTTCTCATCTAATGTATGTCCTTAGAATGTAACC--TACAACTTTCAGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAAC-ATAG-CTTTGATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAA-GAAGCTTGCTTT-AATT--GAAT-TTGAATTTGAA-TTC-ATTACCA--TTGACCTCAAATCAGGTAGGACTACCCGCT 'Chamonixia caespitosa POLAND KRA F-2013-38 KT001255' GATCATTATTGAATACACAAGGACTGTCGCTGGCTAGGTTCATTCTTAGCATGTGCACGTCTACTTTCCACACTTGTGCACCAATTGTAGAT--AACGAAAGAGGATTCTATGTCCTCATCTAATGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTATCAACCATAGTCTTT-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA-GTAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAATGAAGCTTGCTTT-AATTTTGAAT-TTGAATTTGAAATTCTATTACCATTTTGACCTCAAATCAGGTAGGACTACCCGCT 'Chamonixia caespitosa POLAND KRA F-2014-113 KT001257' GATCATTATTGAATACACAAGGACTGTCGCTGGCTAGGTTCATTCTTAGCATGTGCACGTCTACTTTCCACACTTGTGCACCAATTGTAGAT--AACGAAAGAGGATTCTATGTCCTCATCTAATGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTATCAACCATAGTCTTT-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA-GTAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAATGAAGCTTGCTTT-AATTTTGAAT-TTGAATTTGAAATTCTATTACCATTTTGACCTCAAATCAGGTAGGACTACCCGCT 'Chamonixia caespitosa POLAND KRA F-2013-60 KT001258' GATCATTATTGAATACACAAGGACTGTCGCTGGCTAGGTTCATTCTTAGCATGTGCACGTCTACTTTCCACACTTGTGCACCAATTGTAGAT--AACGAAAGAGGATTCTATGTCCTCATCTAATGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTATCAACCATAGTCTTT-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA-GTAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAATGAAGCTTGCTTT-AATTTTGAAT-TTGAATTTGAAATTCTATTACCATTTTGACCTCAAATCAGGTAGGACTACCCGCT 'Chamonixia caespitosa POLAND KRA F-2014-110 KT001259' GATCATTATTGAATACACAAGGACTGTCGCTGGCTAGGTTCATTCTTAGCATGTGCACGTCTACTTTCCACACTTGTGCACCAATTGTAGAT--AACGAAAGAGGATTCTATGTCCTCATCTAATGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTATCAACCATAGTCTTT-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA-GTAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAATGAAGCTTGCTTT-AATTTTGAAT-TTGAATTTGAAATTCTATTACCATTTTGACCTCAAATCAGGTAGGACTACCCGCT Chamonixia_caespitosa_SWEDEN__UDB001774 GATCATTATTGAATACACA-GGACTGTCGCTGGCTAGGTTCATTCTTAGCATGTGCACGTCTACTTTCCACACTTGTGCACCAATTGTAGAT--AACGAAAGAGGATTCTATGTCCTCATCTAATGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTATCAACCATAGTCTTT-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA-GTAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAATGAAGCTTGCTTT-AATTTTGAAT-TTGAATTTGAAATTCTATTACCATTTTGACCTCAAATCAGGTAGGACTACCCGCT Chamonixia_caespitosa_USA__OSC_117036__EU834198 GATCATTATTGAATACACAATGACTGTTGCTGGCTAGG-TCATTCT-AGCATGTGCACGTC-ACTCTCCACACCTGTGCACCAATTGTAGAT--AACGAAA-AGGA-TCTATGTACTCATCTATTGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAAC-AAAG-CTTC-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAA-GAAGCTTGCTTA-AATT----------AATC------TC-ATTACCA--TTGACCTCAAATCAGGTAGGACTACCCGCT Chamonixia_caespitosa_USA__Trappe_12768__EU852804 GATCATTATTGAATACACAATGACTGTTGCTGGCTAGG-TCATTCT-AGCATGTGCACGTC-ACTCTCCACACCTGTGCACCAATTGTAGAT--AACGAAA-AGGA-TCTATGTACTCATCTATTGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAAC-AAAG-CTTC-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAA-GAAGCTTGCTTA-AATT----------AATC------TC-ATTACCA--TTGACCTCAAATCAGGTAGGACTACCCGCT 'Chamonixia caespitosa USA Trappe 10517 (isolate p693i) EU669385' GATCATTATTGAATACACAATGACTGTTGCTGGCTAGG-TCATTCT-AGCATGTGCACGTC-ACTCTCCACACCTGTGCACCAATTGTAGAT--AACGAAA-AGGA-TCTATGTACTCATCTATTGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAAC-AAAG-CTTC-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAA-GAAGCTTGCTTA-AATT----------AATC------TC-ATTACCA--TTGACCTCAAATCAGGTAGGACTACCCGCT 'Chamonixia caespitosa USA OSC 117571 (isolate p071i) EU669208' GATCATTATTGAATACACAATGACTGTTGCTGGCTAGG-TCATTCT-AGCATGTGCACGTC-ACTCTCCACACCTGTGCACCAATTGTAGAT--AACGAAA-AGGA-TCTATGTACTCATCTATTGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAAC-AAAG-CTTC-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAA-GAAGCTTGCTTA-AATT----------AATC------TC-ATTACCA--TTGACCTCAAATCAGGTAGGACTACCCGCT Chamonixia_caespitosa_USA__OSC_117034__EU846243 GATCATTATTGAATACACAATGACTGTTGCTGGCTAGG-TCATTCT-AGCATGTGCACGTC-ACTCTCCACACCTGTGCACCAATTGTAGAT--AACGAAA-AGGA-TCTATGTACTCATCTATTGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAAC-AAAG-CTTC-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAA-GAAGCTTGCTTA-AATT----------AATC------TC-ATTACCA--TTGACCTCAAATCAGGTAGGACTACCCGCT 'Uncultured ECM of Tsuga heterophylla, NA FJ152518' GATCATTATTGAATACACAATGACTGTTGCTGGCTAGG-TCATTCT-AGCATGTGCACGTC-ACTCTCCACACCTGTGCACCAATTGTAGAT--AACGAAA-AGGA-TCTATGTACTCATCTATTGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAAC-AAAG-CTTC-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTTGGAAGCGTCATAA-GAAGCTTGCTTA-AATT----------AATC------TC-ATTACCA--TTGACCTCAAATCAGGTAGGACTACCCGCT 'Uncultured ECM, CANADA, BC EU597022 ' ??????????????????????ACTGTTGCTGGCTAGG-TCATTCT-AGCATGTGCACGTC-ACTCTCCACACCTGTG------------AT--AACGAAA-AGGA-TCTATGT-CTCATCTATTGTATGTCCTTAGAATGTAACAAATACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTAATTATCAAC-AAAG-CTTC-ATTGTTGGCTTGGACTTGGGATTTGCTGGCCAGTCAGCTGTCCTTAAAAGCATTAGCAAGTGAA--TAGACGGCACGGCCTCTGATGATCGTT??AAG-GTCATAA-GAAGCTTGCTTA-AATT----------AATC------TC-ATTACC?--TTGACCTCAAATCAGG?AG??????????? ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 516; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 516; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 516; END; BEGIN TREES; Title 'Fig. 2 - ML tree based on the infrageneric dataset (rev.)'; LINK Taxa = Taxa; TRANSLATE [0] 1 'Uncultured ECM of Lithocarpus densiflorus USA, CA DQ273368', [1] 2 Chamonixia_caespitosa_USA__HQ647124, [2] 3 'Chamonixia caespitosa JPN, Nagano KPM-NC 18070 KP222907', [3] 4 'Chamonixia caespitosa JPN, Nagano KPM-NC 18071 KP222908', [4] 5 'Uncultured ECM of Tsuga heterophylla, NA FJ152519', [5] 6 Chamonixia_caespitosa_USA__OSC_118291__EU834197, [6] 7 Chamonixia_caespitosa_USA__Trappe_12656__EU846310, [7] 8 'Chamonixia caespitosa GERMANY, Bavaria 92/83 DQ534565', [8] 9 'Chamonixia caespitosa POLAND KRA F-2013-38 KT001255', [9] 10 'Chamonixia caespitosa POLAND KRA F-2014-113 KT001257', [10] 11 'Chamonixia caespitosa POLAND KRA F-2013-60 KT001258', [11] 12 'Chamonixia caespitosa POLAND KRA F-2014-110 KT001259', [12] 13 Chamonixia_caespitosa_SWEDEN__UDB001774, [13] 14 Chamonixia_caespitosa_USA__OSC_117036__EU834198, [14] 15 Chamonixia_caespitosa_USA__Trappe_12768__EU852804, [15] 16 'Chamonixia caespitosa USA Trappe 10517 (isolate p693i) EU669385', [16] 17 'Chamonixia caespitosa USA OSC 117571 (isolate p071i) EU669208', [17] 18 Chamonixia_caespitosa_USA__OSC_117034__EU846243, [18] 19 'Uncultured ECM of Tsuga heterophylla, NA FJ152518', [19] 20 'Uncultured ECM, CANADA, BC EU597022 '; TREE Imported_tree_1 = (((20:0.00000120459326510094,(17:0.00000120459326510094,(16:0.00000120459326510094,((14:0.00000120459326510094,19:0.00000120459326510094)5:0.00000120459326510094,(18:0.00000120459326510094,15:0.00000120459326510094)6:0.00000120459326510094)5:0.00000120459326510094)8:0.00000120459326510094)34:0.00000120459326510094)98:0.00000120459326510094,((((((13:0.00000120459326510094,((12:0.00000120459326510094,11:0.00000120459326510094)14:0.00000120459326510094,(9:0.00000120459326510094,10:0.00000120459326510094)10:0.00000120459326510094)30:0.00000120459326510094)100:0.023687084256695863,(2:0.00000120459326510094,(3:0.00000120459326510094,4:0.00000120459326510094)47:0.00000120459326510094)94:0.010847895448901721)20:0.00000120459326510094,6:0.00000120459326510094)11:0.00000120459326510094,5:0.00000120459326510094)17:0.00000120459326510094,7:0.00000120459326510094)96:0.011016386251779553,8:0.035325291120561424)93:0.13393674532727484):0.43873383240129404,1:0.43873383240129404); END; Begin MESQUITE; 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933.1435764721878.2862302523180512393; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1176 557; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((20:0.00000120459326510094,(17:0.00000120459326510094,(16:0.00000120459326510094,((14:0.00000120459326510094,19:0.00000120459326510094)5:0.00000120459326510094,(18:0.00000120459326510094,15:0.00000120459326510094)6:0.00000120459326510094)5:0.00000120459326510094)8:0.00000120459326510094)34:0.00000120459326510094)98:0.00000120459326510094,((((((13:0.00000120459326510094,((12:0.00000120459326510094,11:0.00000120459326510094)14:0.00000120459326510094,(9:0.00000120459326510094,10:0.00000120459326510094)10:0.00000120459326510094)30:0.00000120459326510094)100:0.023687084256695863,(2:0.00000120459326510094,(3:0.00000120459326510094,4:0.00000120459326510094)47:0.00000120459326510094)94:0.010847895448901721)20:0.00000120459326510094,6:0.00000120459326510094)11:0.00000120459326510094,5:0.00000120459326510094)17:0.00000120459326510094,7:0.00000120459326510094)96:0.011016386251779553,8:0.035325291120561424)93:0.13393674532727484):0.43873383240129404,1:0.43873383240129404)<> ;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7967496341512552276 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1176 557; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;