NEXUS
[File created by TreeBASE:  1/16/09  15:39:39]
[Matrix accession#: M4221]

BEGIN TAXA;
	TITLE M4221;
	DIMENSIONS  NTAX=16;
	TAXLABELS
		Kentropyx_sp_2	Kentropyx_pelviceps	Kentropyx_vanzoi_1	Kentropyx_sp_1	Kentropyx_viridistriga_1	Kentropyx_vanzoi_2	Cnemidophorus_gramivagus	Ameiva_ameiva	Kentropyx_striata	Kentropyx_paulensis_2	Kentropyx_viridistriga_2	Kentropyx_paulensis_1	Kentropyx_calcarata_1	Kentropyx_calcarata_2	Kentropyx_altamazonica_2	Kentropyx_altamazonica_1
	;
END;

BEGIN CHARACTERS;
	TITLE M4221;
	DIMENSIONS NCHAR=333;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Kentropyx_sp_2                 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCAACCTTCCCTTGAAA-CCTTC-TTCAGCCTATATACCGCCGTCCT-TTATAC-CGCTTACCTTTTGAAAGATATATGAGTAAGCCAAATAG-CCTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGATTA--TACGAAATGTACTCTGAAATTAAAGTAA-ATGAAGGCGGATTTAGTAGTAAA
		Kentropyx_pelviceps            AATTGTTCGCCAGAAAATTACGGGTGAAAACCTAAAACTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCTAACCTTCCCTTGAAA-CCTACTTTCAGCCTATATACCGCCGTCCT--T--AC-CGCTTACCTTCTGAAAGATGTACTAGTAAGCTCAACAG-CACTT-AACTAAAAAGTCAGGTCAAGGTGTAGCCCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTT-CAGAATA--CACGAAATATACTCTGAAAT-AAAGTAA-ATGAAGGCGGATTTAGTAGTAAG
		Kentropyx_vanzoi_1             ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCGACCTTCCCTTGAAA--T-TT-TACAGCCTATATACCGCCGTCCT-CT-TGC-CGCTTACCTTCTGAAAGACATATGAGTAAGCCAAATAGCCCTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCCTATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAATA--TACGAAATATGCTCTGAAATCAAAGTAA-ATGAAGGCGGATTTAGTAGTAAA
		Kentropyx_sp_1                 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCAACCTTCCCTTGAAA-CCTTC-TTCAGCCTATATACCGCCGTCCT-TTATAC-CGCTTACCTTTTGAAAGATATATGAGTAAGCCAAATAG-CCTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGATTA--TACGAAATGTACTCTGAAATTAAAGTAA-ATGAAGGCGGATTTAGTAGTAAA
		Kentropyx_viridistriga_1       ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTGACTAGAGGAGCCTGCTTCATAATCGATAACCCCCGCTCAACCCAACCTCCCCTTGAAATCTCGC-TTCAGCCTATATACCGCCGTCCT-CTA-AC-CGCTTACCTTCTGAAAGATATACGAGTAAGCCTAATAG-CCTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAACA--TACGAATTATACTCTGAAACTAAAGTAA-ATGAAGGCGGATTTAGTAGTAAA
		Kentropyx_vanzoi_2             ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCGACCTTCCCTTGAAA--T-TT-TACAGCCTATATACCGCCGTCCT-CT-TGC-CGCTTACCTTCTGAAAGACATATGAGTAAGCCAAATAGCCCTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCCTATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAATA--TACGAAATATGCTCTGAAATCAAAGTAA-ATGAAGGCGGATTTAGTAGTAAA
		Cnemidophorus_gramivagus       ACTCGTCCGCCAGAAAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGTTTCATAATCGATAACCCCCGTTCAACCCGACCTTTCCTTGAAA--TATT--TCAGCCTATATACCGCCGTCCT-TT--TC-CGCCTACCTTCTGAAAGACCTAC-AGTAGGCCTAATAGTTCACC-AACTAAAAAGTCAGGTCAAGGTGTAGCTTATGGAAAGGAGAAAATGGGCTACATTTTCTAC-TATAGAACA-CCACGAAATACTTTCTGAAA-T-AAATGT-ATGAAGGAGGATTTAGTAGTAAG
		Ameiva_ameiva                  GTTTATCCGCCAGAGGATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAACCCTGCCTAGAGGAGCCTGTTTCATAATCGATAACCCCCGTTCAACCCAACCTTCCCTCG-AA--CATC--CCAGCCTATATACCGCCGTCTTACT--TCTAGCTTACCTTCTGAAAGAAACAC-AGTAAGCACAATAG-TC-CC-AACTGAAAAGTCAGGTCAAGGTGTAGCTTATGGGAAGGAGAAAATGGGCTACATTTTCTGT-CACAGAACACCCACGGAAAATATTCTGAAA-TAAAATAT-ATAAAGGCGGATTTAGCAGTAAG
		Kentropyx_striata              ACTTGTTCGCCAGAAAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCTACCTCCCCTCGAAA--TC-C---CAGCCTATATACCGCCGTCAT-CT--AC-CGCTTACCTTCTGAAAGACATAC-AGTAAGCCTAATAG-CC-CT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTAATGGGAAGGAGAAAGTGGGCTACATTTTCTAC-TCAAGAACA--CACGAAACTTATCCTGAAA-TAAGGTAA-ATGAAGGCGGATTTAGTAGTAAG
		Kentropyx_paulensis_2          ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCGACCTTCCCTTGAAA-CCCAC-TTCAGCCTATATACCGCCGTCCT-TTATAC-CGCTTACCTTTTGAAAGATATACGAGTAAGCCAAATAG-CTTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAACA--TACGAAATGTACTCTGAAATTAAAGTAA-ATGAAGGCGGATTTAGTAGTAAA
		Kentropyx_viridistriga_2       ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTGACTAGAGGAGCCTGCTTCATAATCGATAACCCCCGCTCAACCCAACCTCCCCTTGAAATCTCGC-TTCAGCCTATATACCGCCGTCCT-CTA-AC-CGCTTACCTTCTGAAAGATATACGAGTAAGCCTAATAG-CCTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAACA--TACGAATTATACTCTGAAACTAAAGTAA-ATGAAGGCGGATTTAGTAGTAAA
		Kentropyx_paulensis_1          ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCGACCTTCCCTTGAAA-CCCAC-TTCAGCCTATATACCGCCGTCCT-TTATAC-CGCTTACCTTTTGAAAGATATACGAGTAAGCCAAATAG-CTTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAACA--TACGAAATGTACTCTGAAATTAAAGTAA-ATGAAGGCGGATTTAGTAGTAAA
		Kentropyx_calcarata_1          ACTTGTCCGCCAGAAAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACAGTGT-CCTAT-CTGCCTAGAGGAGCCTGCTTCATAATCGATAAACCCCGTTCAACCCAACCCTCCCTCGAAA-TCCACTTTCAGCCTATATACCGCCGTCCT--TCTTG-CGCTTACCTTCTGAAAGATCTATTAGTAAGCCCAATAG-CCCTTAAGCTAAAAAGTCAGGTCAAGGTGTAGCCCATGGGAGGGAGAAAGTGGGCTACATTTTCTACCT-TAGAACA--CACGAAATATATTCTGAAACCAAAGTAATATGAAGGTGGATTTAGTAGTAAG
		Kentropyx_calcarata_2          ACTTGTCCGCCAGAAAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACAGTGT-CCTAT-CTGCCTAGAGGAGCCTGCTTCATAATCGATAAACCCCGCTCAACCCGACCCTCCCTCGAAA-CCCACTTTCAGCCTATATACCGCCGTCCT--TCTAG-CGCTTACCTTCTGAAAGATCTATCAGTAAGCCCAATAG-CCCTTAAGCTAAAAAGTCAGGTCAAGGTGTAGCCCATGGGAGGGAGAAAGTGGGCTACATTTTCTACCT-TAGAACA--CACGAAATATACTCTGAAACCAAAGTAATATGAAGGTGGATTTAGTAGTAAA
		Kentropyx_altamazonica_2       ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAATTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGCTTAACCCAACCTTCCCTTGAAA--CCATTTTCAGCCTATATACCGCCGTCCT--T-TAC-CGCTTACCTTCTGAAAGTCACACTAGTAAGCCTAATAG-CCATT-AGCTAGAAAGTCAGGTCAAGGTGTAGCCCATGGGTAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAACA--CACGAAACATACTCTGAAATCAAAGTAA-CCGAAGGCGGATTTAGTAGTAAG
		Kentropyx_altamazonica_1       ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCAACCTTCCCTTGAAA-TTTATTTTCAGCCTATATACCGCCGTCCT--T-TAC-CGCTTACCTTCTGAAAGAAATACTAGTAAGCCTAATAG-CCCCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCCTATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAACA--CACGAAATATACTCTGAAATCAAAGTAA-CTGAAGGCGGATTTAGTAGTAAG
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 333 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;