#NEXUS [written Wed Oct 04 20:23:50 BST 2017 by Mesquite version 3.3 (build 854) at NoPsechrids/192.168.1.84] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=16; TAXLABELS Cadophora_meredithiae_BAG2 Cadophora_meredithiae_BAP6 Cadophora_meredithiae_BAP13 Cadophora_interclivum_BAG4 Cadophora_interclivum_BAP33 Cadophora_interclivum_BAP37 Cadophora_gregata Cadophora_orchidicola 'Cadophora luteo-olivacea KM497133' Cadophora_malorum_KM497134 Cadophora_fastigiata_KM497131 Cadophora_spadicis_KM497136 Cadophora_melinii_KM497132 Cadophora_orientoamericana_KM497099 'Cadophora novi-eboraci KM497135' Cadophora_finlandica_KM497130 ; END; BEGIN CHARACTERS; TITLE Cadophora_BtCad_; DIMENSIONS NCHAR=686; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Cadophora_meredithiae_BAG2 GTAAGTCTTT-TCTCTCCTTCGCAGCTTCAACATGCTGCT---CGACGCGTCGGCCTCAACCCCTGAATTGA-ACTACCCCACTA-CCCCTTCGAATACCCAGGG-------GACGACGGCCTCTTTGCTAACCACTTGTCT-----GCTTCAGGTTCATCTTCAAACCGGCCAATGCGGTAACCAAATTGGGTATGTTCCTCCTCAATTCG--CTCTGTGAGGGCATTCACTGACTCTGCGATTCTTCTAGTGCCGCCTT--------TTGGTGAG--AACCCCAAACATCGCGACCTGCCTTACCTGATACACGAACGCGACACAAAGGACCAC----AATACTGATAAACATGCA-GGCAAACAATCTCAGGAGAGCACGGTCTTGATGGATCCGGCGTGTAAGTTCTACCGAACATACGCAGAGCCATTTATGGCTGCCTGTTGACATCTGGCTGAC-TTTGTTTACAGCTACAATGGTACTTCTGATCTCCAACTCGAGCGCCTGAACGTCTACTTCAACGAGGTTCGTACCGATAAGCCCA----ACGGATATACAAAC---CCTAACTTTTT-ATCAGGCCTCCGGAAACAAGTATGTTCCTCGTGCCGTCCTCGTCGATTTGGAGCCAGGTACCATGGATGC-CGTCCGTGCTGGTCCTTTCGGACAACTCTTCCGC- Cadophora_meredithiae_BAP6 GTAAGTCTTT-TCTCTCCTTCGCAGCTTCAGCATGCTGCT---CGACGCGTCGGCCTCAACCCCTGAATTGA-ACTACCCCACTA-CCCCTTCGAATACCCAGGG-------GACGACGGCCTCTTTGCTAACCACTTGCCT-----GCTTCAGGTTCATCTTCAAACCGGCCAATGCGGTAACCAAATTGGGTATGTTCCTCCTCAATTCG--CTCTGTGAGGGCATTCACTGACTCTGCGATTCTTCTAGTGCCGCCTT--------TTGGTGAG--AACCCCAAACATCGCGACCTGCCTTACCTGATACACGAACGCGACACAAAGGACCAC----AATACTGATAAACATGCA-GGCAAACAATCTCAGGAGAGCACGGTCTTGATGGATCCGGCGTGTAAGTTCTACCGAACATACGCAGAGCCATTTATGGCTGCCTGTTGACATCTGGCTGAC-TTTGTTTACAGCTACAATGGTACTTCTGATCTCCAACTCGAGCGCCTGAACGTCTACTTCAACGAGGTTCGTACCGATAAGCCCA----ACGGATATACAAAC---CCTAACTTTTT-ATCAGGCCTCCGGAAACAAGTATGTTCCTCGTGCCGTCCTCGTCGATTTGGAGCCAGGTACCATGGATGCAAGTCCGTGCTGGTCCTTTCGGACAACTCTTCCGC- Cadophora_meredithiae_BAP13 GTAAGTCTTT-TCTCTCCTTCGCAGCTTCAGCATGCTGCT---CGAAGCGTCGGCCTCAACCCCTGAATTGA-ACTACCCCACTA-CCCCTTCGAATACCCAGGG-------GACGACGGCCTCTTTGCTAACCACTTGCCT-----GCTTCAGGTTCATCTTCAAACCGGCCAATGCGGTAACCAAATTGGGTATGTTCCTCCTCAATTCG--CTCTGTGAGGGCATTCACTGACTCTGCGATTCTTCTAGTGCCGCCTT--------TTGGTGAG--AACCCCAAACATCGCGACCTGCCTTACCTGATACACGAACGCGACACAAAGGACCAC----AATACTGATAAACATGCA-GGCAAACAATCTCAGGAGAGCACGGTCTTGATGGATCCGGCGTGTAAGTTCTACCGAACATACGCAGAGCCATTTATGGCTGCCTGTTGACATCTGGCTGAC-TTTGTTTACAGCTACAATGGTACTTCTGATCTCCAACTCGAGCGCCTGAACGTCTACTTCAACGAGGTTCGTACCGATAAGCCCA----ACGGATATACAAAC---CCTAACTTTTT-ATCAGGCCTCCGGAAACAAGTATGTTCCTCGTGCCGTCCTCGTCGATTTGGAGCCAGGTACCATGGATGC-AGTCCGTGCTGGTCCTTTCGGACAACTCTTCCGC- Cadophora_interclivum_BAG4 GTAAGTCTTT-TCTCTCCTTCGCAGCTTCAGCATGCTGCT---CGACGCGTCGGCCTCAACCCCTGAATTGA-ACTACCCCACTA-CCCCTTCGAATACCCAGGG-------GACGACGGCCTCTTTGCTAACCACTTGTCT-----GCTTCAGGTTCATCTTCAAACCGGCCAATGTGGTAATCAAATTGGGTATGTTCCTCCTCAATTCG--CTCTGTGAGGGCATTCACTGACTCTGCGATTCTTCTAGTGCCGCCTT--------TTGGTGAG--AATCCCAGACATCGCGACCTGCCTTACCTGATACACGAACGCGACACAAAGGACCAC----AATACTGATAAACATGCA-GGCAAACAATCTCAGGAGAGCACGGTCTTGATGGATCCGGCGTGTAAGTTCTACCGAACATCCGCAGAGCCATTTATGGCTGCCTGTTGACATCTGGCTGAC-TTTGTTTACAGCTACAATGGTACTTCTGATCTCCAACTCGAGCGCCTGAACGTCTACTTCAACGAGGTTCGTACCGAGAAGCCCA----ACGGATATACAAAC---CCTAACTTTT--ATCAGGCCTCCGGAAACAAGTATGTTCCTCGTGCCGTCCTCGTCGATTTGGAGCCAGGTACCATGGATGC-CGTCCGTGCTGGTCCTTTCGGACAACTCTTCCGC- Cadophora_interclivum_BAP33 GTAAGTCTTT-TCTCTCCTTCGCAGCTTCAGCATGCTGCT---CGACGCGTCGGCCTCAACCCCTGAATTGA-ACTACCCCACTA-CCCCTTCGAATACCCAGGG-------GACGACGGCCTCTTTGCTAACCACTTGTCT-----GCTTCAGGTTCATCTTCAAACCGGCCAATGTGGTAATCAAATTGGGTATGTTCCTCCTCAATTCG--CTCTGTGAGGGCATTCACTGACTCTGCGATTCTTCTAGTGCCGCCTT--------TTGGTGAG--AATCCCAGACATCGCGACCTGCCTTACCTGATACACGAACGCGACACAAAGGACCAC----AATACTGATAAACATGCA-GGCAAACAATCTCAGGAGAGCACGGTCTTGATGGATCCGGCGTGTAAGTTCTACCGAACATCCGCAGAGCCATTTATGGCTGCCTGTTGACATCTGGCTGAC-TTTGTTTACAGCTACAATGGTACTTCTGATCTCCAACTCGAGCGCCTGAACGTCTACTTCAACGAGGTTCGTACCGAGAAGCCCA----ACGGATATACAAAC---CCTAACTTTT--ATCAGGCCTCCGGAAACAAGTATGTTCCTCGTGCCGTCCTCGTCGATTTGGAGCCAGGTACCATGGATGC-CGTCCGTGCTGGTCCTTTCGGACAACTCTTCCGC- Cadophora_interclivum_BAP37 GTAAGTCTTT-TCTCTCCTTCGCAGCTTCAGCATGCTGCT---CGACGCGTCGGCCTCAACCCCTGAATTGA-ACTACCCCACTA-CCCCTTCGAATACCCAGGG-------GACGACGGCCTCTTTGCTAACCACTTGTCT-----GCTTCAGGTTCATCTTCAAACCGGCCAATGTGGTAATCAAATTGGGTATGTTCCTCCTCAATTCG--CTCTGTGAGGGCATTCACTGACTCTGCGATTCTTCTAGTGCCGCCTT--------TTGGTGAG--AATCCCAGACATCGCGACCTGCCTTACCTGATACACGAACGCGACACAAAGGACCAC----AATACTGATAAACATGCA-GGCAAACAATCTCAGGAGAGCACGGTCTTGATGGATCCGGCGTGTAAGTTCTACCGAACATCCGCAGAGCCATTTATGGCTGCCTGTTGACATCTGGCTGAC-TTTGTTTACAGCTACAATGGTACTTCTGATCTCCAACTCGAGCGCCTGAACGTCTACTTCAACGAGGTTCGTACCGAGAAGCCCA----ACGGATATACAAAC---CCTAACTTTT--ATCAGGCCTCCGGAAACAAGTATGTTCCTCGTGCCGTCCTCGTCGATTTGGAGCCAGGTACCATGGATGC-CGTCCGTGCTGGTCCTTTCGGACAACTCTTCCGC- Cadophora_gregata GTAAGTTCTC-TCTTTTCTTCGCAGCTCCAGCACACAG-T---CGACGCGTCTGGCTCAACCCCTGAATGGA-ACTACCCCACCA---CCTTCGACTTCACAAGGGGGCGACGACCACGACCTCTTTGCTGACCAC-TGTCT-----GCTACAGGTTCATCTTCAAACCGGCCAATGTGGTAACCAAATCGGGTATGTTGCTCCTCAATTCT--CTCTATAAGAATATTTACTGACTCGGCGATTCTTCTAGTGCTGCCTT--------TTGGTAAG--AACCCCAAACATCGCGACCTGCCTTGCCTGCCACACGAACGCGACACATAAGAGCCC----AATGCTGATAAACATCCA-GGCAAATTATCTCAGGAGAGCATGGTCTTGATGGATCCGGCGTGTAAGTTCTACATATCATTTGCAGGGCTTTTTACGGCTGCCTGTTGACACCTGGCTGAC-TTTGTTTACAGCTACAACGGTACTTCCGACCTCCAACTCGAGCGCCTCAACGTTTACTTCAACGAGGTTCGTATAGATATTTCCA----ACCGATAGACAAGT---TCTGACTTTTTCATCAGGCCTCTGGTAACAAGTATGTTCCTCGTGCCGTTCTCGTCGATTTGGAGCCAGGTACTATGGATGC-TGTCCGTGCTGGTCCTTTCGGCCAGCTTTTCCGC- Cadophora_orchidicola GTAAGTATTCCTGTCCTGCCCTCAGCTCCAGCGCCAGCCTCAACAACGCGTTCTGCTCAACCCCTGAGTTG---CTACCCCACTA-CACCTCCAACCCCCAAAGA-------------GACCACTTTGCTGACCATTTCT--------CTACAGGTTCATCTCCAAACCGGCCAATGTGGTAACCAAATTGGGTACGTTGCTCTTCAATCCC--CTCTACAAGTACTATTACTGACTGTGCGATTCCTCTAGTGCTGCCTT--------TTGGTATGTAAAGTCCA---ATCGCGACCTGCCCTGCCTAATACACGAACGCGACATAAAGGACTTC----AGTGCTGATAAAGAAACA-GGCAAACAATCTCAGGCGAGCACGGTCTTGATGGATCCGGCGTGTAAGTTTTACTTGGGATCTGCGGTGCCGTTTATGGCTGCGTGTTGATATCAGGCTAAC-TTTGTTTACAGGTACAACGGTACATCCGATCTCCAACTTGAGCGATTGAACGTCTACTTCAACGAGGTTGGTGCCAACAATTCTA----GCACATAATCAGTC---CCTAACTTTTC-ACTAGGCCTCCGGTAACAAGTATGTTCCTCGTGCCGTCCTTGTCGATTTGGAGCCAGGTACCATGGATGC-CGTCCGTGCTGGTCCTTTCGGTCAACTCTTCCGC- 'Cadophora luteo-olivacea KM497133' ----------------------------------------------------------------TGAGTCGA-ACTACCCCACTA--CCCTTCGAAGTCCCAGGG-------GAGGACGACCTTTTTGCTGACCACTTATCA-----ACTACAGGTTCATCTTCAAACCGGACAATGCGGAAACCAATTTGGGTATGTTGCTCTTCAATTCGACCAATATGAAAGCCTTCCGTGACTGTGCGATTCTTTTAGTGCTGCCTT--------TTGGTGAG--AAGCCCCAATATCGCGACCTGCCTTACCTGATACACGAACGCGACACAAAGAACCTC----AGTACTGATAAACACGCA-GGCAAACAATCTCAGGAGAGCACGGTCTTGATGGATCCGGAGTGTAAGTTGTACCGAATATATGCAGACTCATTCACGGCTGCCTGTTGACATCT-GCTGACTTTTGTTTACAGCTACAATGGTACCTCTGATCTCCAACTCGAGCGCCTGAACGTCTACTTCAACGAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------ Cadophora_malorum_KM497134 ----------------------------------------------------------------TGAATCGA-ACTACCCCACCA--CCCGACGAAATCCCAGGG-------GACGACGACCTTTTTGCTGACCACTTATCA-----ACTACAGGTTCATCTTCAAACCGGCCAATGCGGTAACCAAATTGGGTATGTTGCCCTTCAATTCAACCTATACAAAAGCGTTCACTGACTGTGCGATTCTTCTAGTGCTGCCTT--------TTGGTGAG--AAGCCCCAACATCGCGACCTGCCTTACCTGATACATGAACGCGACACAAAGAACCTC----AGTACTGATAAACATGCA-GGCAAACAATCTCAGGAGAGCACGGTCTTGATGGATCCGGAGTGTAAGTTGTACCAAATATTTGCAGACCCATCTACGGCTGCCTGTTGACATCT-GCTGACTTTTGTTTACAGATACAATGGTACCTCTGATCTCCAACTCGAGCGCCTGAACGTCTACTTCAACGAGGTTCGTAGCGATAAACCAACAC-ATGAATA---AAGT---CCTAACATTTTCATTAGGCCTCCGGAAACAAGTATGTT-------------------------------------------------------------------------------- Cadophora_fastigiata_KM497131 ---------------------------------------------------------TTACCCCTGAATTG---CTACCCCACTA-CCCCTTCAACCTC----------------AACGACCGATTTGCTGACCTACTATCT--------ACAGGTTCATCTTCAAACTGGCCAGTGTGGAAACCAGATTGG---TGCTGCTT----------------TGTATGTATTCCCTGACCTTTCGCTCGCTTCAATGCTAATTCATGAACAGCTGGTGCGTACAACCTCGGCGTCGCGACAAATT---CCAGATACACGAACGCGACACAAAGGACTTCAATAAATGCTGACTAACATACA-GGCAAACAATCTCAGGCGAGCATGGTCTTGATGGATCCGGCGTGTAAGTTGC-TCTTGTGCTGGCATAGCTCCTCAAG----------TACTCTAGGCTGAC-ATAGTTGATAGCTACAATGGCACGTCTGATCTTCAACTCGAGCGCTTGAACGTCTACTTCAACGAGGTTAGTAACAATAACCATAGTTAGCATAATGTCAGGT---GCTAAATTTGG-GCTAGGCCTCTGGTAACAAGTATGTT-------------------------------------------------------------------------------- Cadophora_spadicis_KM497136 ---------------------------------------------------------TTACCCCTGAATTG---CTACCCCACTA-CCCCTTCAACCTC----------------AACGACCGATTTGCTGACCTACTAT--------CTACAGGTTCATCTTCAAACTGGCCAGTGTGGAAACCAGATTGG---TGCTGCTT----------------TGTATGTATTCCCTGACCTTTCGCTCGCTTCAATGCTAATTCATGAACAGCTGGTGCGTACAACCTCGGCGTCGCGACAAACT---CCAGATACACGAACGCGACACAGAGGACTTCAATAAATGCTGATAAACATACA-GGCAAACAATCTCAGGCGAGCTTGGTCTTGTTGGATCCGGCGTGTAAGTTTGCTCTTGTGCTGGC----------ATAGCTCCTCGTTTACTCTAGGCTGAC-ATAGTTGATAGCTACAATGGCACGTCTGATCTTCAACTCGAGCGCTTAAACGTCTACTTCAACGAGGCTAGTAACAACAACCACAGTTAGCATAATGTTAGTT---GCTAACTCTAG-TCTAGGCCTCTGGTAACAAGTATGTT-------------------------------------------------------------------------------- Cadophora_melinii_KM497132 ---------------------------------------------------------TTACCCCTGAATTG---CTACCCCACTA-CCCCTTCGACCTCT----------------ACGACCGACTTGCTGACCTACTATCT--------ACAGGTTCATCTTCAAACTGGCCAGTGTGGAAACCAGATTGG---TGCTGCTT----------------TGTATGTATTTCCTGACCTTTCGCTTGCTTCAATGCTAATTCATGAATAGCTGGTGCGTAAAACCTCAGCGTCGCGACAATCT---CCTGATACATCAACGCGACATTAAGGACTTCAATGAATGCTGATAAACATACA-GGCAAACAATCTCAGGCGAGCATGGTCTTGATGGATCCGGCGTGTAAGTTTGCTCTTGTGCTGGCATAGCCTTTCGAGGCTCCTTGTTTACTCCAGGCTGAC-ATAGTTGATAGCTACAATGGCACGTCTGATCTTCAACTCGAGCGCTTGAACGTCTACTTCAACGAGGTTAGTAACAATAACGATAGTTAGCATAATGTCAGGT---GCTAAATTTGG-GCTAGGCCTCTGGTAACAAGTATGTT-------------------------------------------------------------------------------- Cadophora_orientoamericana_KM497099 ---------------------------------------------------------TTACCCCTGAATTG---CTACCCCACTA-CCCCTTCGACCTCA----------------ACGACCGATTTGCTGATCTACTAT--------GAACAGGTTCATCTTCAAACTGGCCAGTGTGGTAACCAGATCGG---TGCTGCTT----------------TGTATGTATTTCCTGACCTATCGCTTACTTCAATGCTAATTCATGAATAGCTGGTGCGTACAACCTGGGAGTCGCGATAAACT---CCTGATACACGAACGCGACATGAAGGACTTTAATGAATACTGATAAACATACA-GGCAAACAATCTCAGGCGAGCATGGTCTTGATGGATCCGGCGTGTAAGTTTGCCCTTGTGCTAACATGGCCTCTCGAGGCTCCTTGTCTACTCCAGGCTGAC-ATAATTGATAGCTACAATGGCACATCTGATCTTCAACTCGAGCGCTTGAATGTCTACTTCAACGAGGTTAGTAACAACAACGACAGCTAGCATATTGTAAGTT---ACTAACTAAGT--CTAGGCCTCTGGTAACAAGTATGTT-------------------------------------------------------------------------------- 'Cadophora novi-eboraci KM497135' ---------------------------------------------------------TTACCCCTGAATTACTGCTACCCCACTACCCCCTTCGACCTC----------------GACAACCATTTCGCTGACCATCTATTT--------CTAGGTTCATCTTCAAACTGGCCAGTGTGGTAACCAGATTGGAGCCGC----------------TTTTGTGAGTATTTTGACTCCCTCCA-GCTTATTGCAATGCTAATGCGGTGTCTAGTGGTGTGTACAGTCCCGTCGTCGCGACAATCTT----TGATACACGTACGCGACACAAAGGACTTC----GATGCTAATAAACAAACA-GGCAAACAATCTCTGGCGAGCATGGTCTTGATGGATCCGGCGTGTAAGCTCT----TGCGCTGGCATGGCCCTTCGAGGCTACTTGTTTACTCTAGGCTGAC-ATTGTTGATAGCTACAATGGCACATCTGATCTTCAACTCGAGCGCTTGAACGTCTACTTCAACGAGGTTAGTTCCAAGGCCTAGAAATTACATACTGTCTGTC---GCTAAATATGCTAT-AGGCTTCTGGTAACAAGTATGTT-------------------------------------------------------------------------------- Cadophora_finlandica_KM497130 GC---------------------------------------------------------ACCCCTGAATT---CCTACCCCACTA-CCACCTCCACCTCAAGAGA----------GATGGCC--TTCGCTGACCATGTGTTCTTCAATCTATAGGTTCATCTCCAGACTGGCCAATGTGGCAACCAGATCGGA------------------------------------------------------------GCCGCTTT---------TTGTTCGTCTCCCCTCACCGTCGCGA---------TTTGATATAC-------------------------GTTGCTAATAACCACACAGGGCAAACCATCTCCGGCGAGCATGGCCTTGATGGCTCTGGCGTGTAAG--------CACTCTGGCTGTACATTTT-------CTTGTTTACATCTCGTTGAC---ACTCTACAGCTACAATGGCACGTCTGATCTTCAGCTTGAGCGCATGAATGTCTACTTCAACGAGGTTGGTATCA-----TCTG----CCATTCATCTAAACATTGCTAACGCGT--ATCAGGCCTCCGGTAACAAGTATGTT-------------------------------------------------------------------------------- ; END; BEGIN TREES; Title Cadophora_BTCad_Tree; LINK Taxa = Taxa; TRANSLATE [0] 1 Cadophora_meredithiae_BAG2, [1] 2 Cadophora_meredithiae_BAP6, [2] 3 Cadophora_meredithiae_BAP13, [3] 4 Cadophora_interclivum_BAG4, [4] 5 Cadophora_interclivum_BAP33, [5] 6 Cadophora_interclivum_BAP37, [6] 7 Cadophora_gregata, [7] 8 Cadophora_orchidicola, [8] 9 'Cadophora luteo-olivacea KM497133', [9] 10 Cadophora_malorum_KM497134, [10] 11 Cadophora_fastigiata_KM497131, [11] 12 Cadophora_spadicis_KM497136, [12] 13 Cadophora_melinii_KM497132, [13] 14 Cadophora_orientoamericana_KM497099, [14] 15 'Cadophora novi-eboraci KM497135', [15] 16 Cadophora_finlandica_KM497130; TREE Imported_tree_1 = (16:0.15399727,((15:0.05308065,(14:0.03187379,(13:0.01123925,(11:0.00726753,12:0.01467026):0.01069834[%posteriorProbability = 0.978 ]):0.0057867[%posteriorProbability = 0.842 ]):0.02045612[%posteriorProbability = 0.83 ]):0.0480954[%posteriorProbability = 0.72 ],(8:0.10537369,(7:0.07275878,((9:0.02476015,10:0.02167306):0.03317586[%posteriorProbability = 0.974 ],((1:0.0,(2:0.0,3:0.0):0.00355764[%posteriorProbability = 0.73 ]):0.00459154[%posteriorProbability = 0.914 ],(4:0.0,(5:0.0,6:0.0):0.0[%posteriorProbability = 0.358 ]):0.01039034[%posteriorProbability = 0.958 ]):0.03049671[%posteriorProbability = 0.934 ]):0.01440168[%posteriorProbability = 0.698 ]):0.03100607[%posteriorProbability = 0.778 ]):0.08305299[%posteriorProbability = 0.988 ]):0.04383743[%posteriorProbability = 0.0 ])[% ] [% ] [% setBetweenBits = selected setBetweenDouble = posteriorProbability ]; END;