NEXUS [File created by TreeBASE: 7/26/07 20:58:48] [Matrix accession#: M878] BEGIN TAXA; TITLE M878; DIMENSIONS NTAX=13; TAXLABELS Nodulisporium_sp._6245 Nodulisporium_sp._6246 Nodulisporium_sp._6262 Nodulisporium_sp._6263 Nodulisporium_sp._6315 Nodulisporium_sp._6321 Nodulisporium_sp._6324 Nodulisporium_sp._6377 Nodulisporium_sp._6378 Nodulisporium_sp._6379 Nodulisporium_sp._6380 Nodulisporium_sp._5954 Nodulisporium_sp._6230 ; END; BEGIN CHARACTERS; TITLE M878; DIMENSIONS NCHAR=674; FORMAT DATATYPE = DNA MISSING = ? GAP = - ; MATRIX Nodulisporium_sp._6245 CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGACACCTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCCTGGCTGCTAGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC Nodulisporium_sp._6246 CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGACACCTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCCTGGCTGCTAGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC Nodulisporium_sp._6262 CATTAATGAGTTACTAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGCT-GCTACC-TGGAGCTACCCTGGAAGGCACCTACCCTGTAGTGGGTGTCTGCCAAGAGCTATCCTGTCAGGCACCTACCTCTGTAGTGGTTGTCTGCCAGGAGTTATCTTGGCAGGCACCTACCCTGTAGTAGTTGTCTGCTAAGAGTTATCCTAGCAGGCACCTACCCTGTAGTAGTTGTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGAAGGACCG-TTAAACTCTTGCTTCTACAACTGTATCTCTGAACACGTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCACTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTCGTGTGGTGGCCCTGGCTGCTGGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC Nodulisporium_sp._6263 CATTAATGAGTTACTAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCTTCGGCGCGTGCTGCT-GCTACC-TGGAGCTACCCTGGAAGGCACCTACCCTGTAGTGGTTGTCTGCCAAGAGCTATCCTGTCAGGCACCTACCTCTGTAGTGGTTGTCTGCCAGGAGTTATCTTGGCAGGCACCTACCCTGTAGTAGTTGTCTGCTAAGAGTTATCCTAGCAGGCACCTACCCTGTAGTAGTTGTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGAAGGACCG-TTAAACTCTTGCTTCTACAACTGTATCTCTGAACACGTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCACTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTCGTGTGGTGGCCCTGGCTGCTGGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC Nodulisporium_sp._6315 CATTAATGAGTTACTAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGCT-GCTACC-TGGAGCTACCCTGGAAGGCACCTACCCTGTAGTGGTTGTCTGCCAAGAGCTATCATGTCAGGCACCTACCTCTGTAGTGGTTGTCTGCCATGAGCTGTCTTGGCAGGCACCTACCCTGTA--------------------------------------------GTAGTTGTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGAAGGACCG-TTAAACTCTTGCTTCTACAACTGTATCTCTGAACACGTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATATCTCTCGCTCGTGTGGTGGCCCTGGCTGCTGGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC Nodulisporium_sp._6321 CATTAATGAGTTACTAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGCT-GCTACC-TGGAGCTACCCTGGAAGGCACCTACCCTGTAGTGGTTGTCTGCCAAGAGCTATCATGTCAGGCACCTACCTCTGTAGTGGTTGTCTGCCATGAGCTGTCTTGGCAGGCACCTACCCTGTAGTGGTTGTCTGCTAAGAGTTATCCTAGCAGGCACCTACCCTGTAGTAGTTGTCTACCATGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGAAGGACCG-TTAAACTCTTGCTTCTACAACTGTATCTCTGAACACGTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATATCTCTCGCTCGTGTGGTGGCCCTGGCTGCTGGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC Nodulisporium_sp._6324 CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGACACTTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCACTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCTTGTTGCTTAGCGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCCTGGCTGCTAGCCGTAAAACCCCCTATTTTCTAATGGTTGACCTC Nodulisporium_sp._6377 CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGACACCTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCACTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCTTGTTGCTTAGCGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCCTGGCTGCTAGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC Nodulisporium_sp._6378 CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGGCATCTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCTTAGCTGCTAGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC Nodulisporium_sp._6379 CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGGCATCTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCACTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCTTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTTAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCCTGGCTGCTAGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC Nodulisporium_sp._6380 CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGACACCTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTATTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATTAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCCTGGCTGCTAGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC Nodulisporium_sp._5954 CATTAATGAGTTACTAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGCT-GCTACC-TGGAGCTACCCTGGAAGGCACCTACCCTGTAGTGGTTGTCTGCCAAGAGCTATCATGTCAGGCACCTACCTCTGTAGTGGTTGTCTGCCATGAGCTGTCTTGGCAGGCACCTACCCTGTA--------------------------------------------GTGGTTGTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGAAGGACCG-TTAAACTCTTGCTTCTACAACTGTATCTCTGAACACGTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCCGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATATCTCTCGCTCGTGTGGTGGCCCTGGCTGCTGGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC Nodulisporium_sp._6230 CATTAATGAGTTACTAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGCTGGCTACC-TGGAGCTACCCTGGAAGGCACCTACCCTGTAGTGGGTGTCTGCCAAGAGCTATCCTGTCAGGCACCTACCTCTGTAGTGGTTGTCTGCCAGGAGCTATATTGGCAGGCACCTACCCTGTA--------------------------------------------GTAGTTGTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGAAGGACCGGCTGAACTCTTGTCTTTACAACTGTATCTCTGAACACGTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTCGTGTGGTGGCCCTGGCTGCTGGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1 - 674 ; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; END;