#NEXUS [written Fri Jul 13 11:31:49 EDT 2012 by Mesquite version 2.75 (build 564) at Robert-Baratheons-MacBook.local/10.0.1.136] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=61; TAXLABELS Eoraptor Herrerasaurus Acrocanthosaurus Aerosteon Afrovenator Allosaurus Angaturama Australovenator Baryonyx Carcharodontosaurus Ceratosaurus Chilantaisaurus Chuandongocoelurus Coelophysis_bauri Coelophysis_rhodesiensis Compsognathus Concavenator Condorraptor Cryolophosaurus CV00214 D_sinensis Dilophosaurus Dubreuillosaurus Duriavenator Elaphrosaurus Eocarcharia Eustreptospondylus Fukuiraptor Giganotosaurus Irritator Leshansaurus Lourinhanosaurus Magnosaurus Majungasaurus Mapusaurus Marshosaurus Masiakasaurus Megalosaurus Megaraptor Metriacanthosaurus Monolophosaurus Neovenator Ornitholestes Piatnitzkysaurus Piveteausaurus Poekilopleuron Proceratosaurus Saurophaganax Shaochilong Shidaisaurus Siamotyrannus Sinraptor_dongi Spinosaurus Streptospondylus Suchomimus S_zigongensis Torvosaurus Tyrannotitan Xuanhanosaurus Yangchuano_hepingensis Yangchuano_magnus ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=351; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6 7 8"; MATRIX Eoraptor 00010000?00000??????0101000?0?0010000?0000100??0001?0000001000000?0000000000?10?00??0?001000?0000?0??????0??00?0?101000000?0?0000?00?0000?0?00?000100000000000?0?????????800000000000000?0?00000000000000?0000001?0010000?000001000000001000000000?00100000100000000000010000000?00000000000??000?0000000?00000?0000?000?000000000???80000000000000000000000000 Herrerasaurus 00001000000000????0?0001000?0?0?00000?0000100??001201000000000000?00000100000000020?000010?00000?10??00000000?000000?10000?0?0000?000010010000?0?01000000000008001000010??00000000000000?0?1000000?0000000000000??001??00?1?011?0??000001000000100000101000100000000000010000000?00000000000?0?001000000?00000??0000100000000000000???0100001000000000000000000 Acrocanthosaurus 020?1100?0000001111000000211111100010?000000211101211100020212011?1121111020110?02??11012100000100110100012011111?111002100101020010?11111?000100010000010011012?00110011?00?0012110001000110011211110?0021000000101?1?110110120012001110?001011110000113110111111000????010?10??1110110201201?120?201111000220111011110000110010302?1010?1110?1??01210111001?1 Aerosteon ????????????????????????????????????????????????????????01?000?111??????????10000200???????????????????????????????????????????????????????????????????????110121???????11?01001?1?00010001011010111?????2?110??0?????????0101100121????????????????????????????????01011010010221110110201201?120??????????????????????????1001?402????01112021110???????????? Afrovenator ?????????0010101100000100120011000?????0?000201001?011001011000?????????00?001111001?????????????????????????????????????????????????????0000000001?????10?11001?0?011000010001101100001?001?000001???????100000???1?01010??????????0111?????00?0?????0?31001111?100001?10?01101011?011?2012?1?00?001011100011101100001100001000020?11010110???111011?011100??1 Allosaurus 00101(0 1)000001000101000000021111110001101100002(0 1)2(0 1)0010110000000101111100011020000002001101100011010010010201201111111112000100110201111111110000100011020010011001100110010(0 1)100001011000100001000101111000011?0000000101?11011012001200111010110000100011131001111110000111010010211110110201201?1100200111000(1 2)10111011110000110010202210101111021110121011100101 Angaturama 11???201?1121?11???0?????????????0?????????????????????????????????????????????????????????????????????????????????????1?0??????????????????110111701311??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Australovenator ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????00001???????????100001000110????????????????????????????????????????????????????????????0????????????????????????????00010101????01?1111??101??????????????????????????????????????2201210111100011100114022101011121211101211????010? Baryonyx 111?0201011210110?0000???02???1??01????0?001202011?0??????0??0?1111100??????0?11011010001011?01??010210?011??????????001101010?(1 2)101???1??0100101100013001011100(1 2)?1001001001000110111110100011000101010?0???000?00??1??1?00??0?1?0100011111100010011010????????????10?0?11010?101?1110110(0 1)0?2?1?0????0011000????1????00110100????????110?0?????????????0???????? Carcharodontosaurus ??????0??000000111100001001101110101111000?02?1?0??111100??21211211?211????0????????110121?0??0100??01121121???1???????2?10??????????????1000020000?????10?110?2?????0??01?0?00101?0???1????0??????????????100?0???1???1??????????????????????????????????????????????????1??1???????11?????0?????0??11?????22??1101111??01?100???????010?????????????????????? Ceratosaurus 0210100010000000000000000010100010120?00000020200110000000100001111110001010010010001010100000000110100001110000?100010000001??1000000100100010000010100100011021?0100010000000021100000010100001010211??10000210?0100001101011110100100110000????0??1??1?01?00010?010?11100?0000111011110110100001(0 1)0001001100110(0 1)001102100010100200211101001021??1?0001??10??? Chilantaisaurus ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????0110110000????????????????????11??????10????2110????????????????????????22??111???1000?1100??40221????1?????????2101??0???? Chuandongocoelurus ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????0????????????????????0?????????????0?????????0????????????????????????????????????????????????????????00???0011101011???1?0?????0?????????????00?101000100000?1000040?2121011???21110?100??100??? Coelophysis_bauri 00101211000010????0?011010100?0000000?0000101??0000000000000000?0?00000110110100000?0000000?0?2??1????0??1?0?0?0?00??00110?0?0000?00?0000000010000?0000000001100?100011000?000001011000000?0000000001000000000011?1100?01?000001002000001000000?0(0 1)?00101110100000000100100011000011011110100?10000001000010000110(0 1)00?00?000?01000100002100000010111100011000000 Coelophysis_rhodesiensis 00???211000010???00?01101100?00000000?020010100001(0 1)00000000?000100000000?0110?0000000000000000200100?000?10000000001000100000000000000000100000000100000000011011?0001100000000010110000000?0000000010000?0000?11?1100001?000001002000001000?0010(0 1)000110110100000000100100011000111011110000?1000?011100010000111(0 1)001102000?0100?100002100000010111100011010000 Compsognathus 00???100000100????0?010002100?1??0000?0000000??00000?000?00?00????1?00????????0??0????0??00?????0??0?0??????1?1????1?0000?00??0??100??10100?0000?0??0000100?100(1 2)???????100?001??001100?000????0000??1??0??000?0?00?1?0?0111?011100?0?????0???0???0??01?1310011????0?000??010?11??110011?20?201?011?11?10??002???111?????????1?0???????01011???????01??0?11?0101 Concavenator ?????0???????0??????001002??0?1?00?1111?10102010000?110??10??2????1?????????????????????????????????????????????????????????????????????????1020?0??????(0 1)0??100?????????????????(1 2)?1??10????1???0211?1?1??(0 1)100?000????1?111110?10?1??0?0??10??0?1010001??????????????0?0?0?10?11??111011020????????02011???1?22??1100???????????????2??0?0?1?1?????0???0?1?00??? Condorraptor ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????0010001????????01001????????0000?00101?00001000?2001?011101001?0002???01??101???????????????????????????????????????????0?1??01?01010????????0????0???00001100????????0??01000001?00??01????????????????1?01???0??? Cryolophosaurus ???????????????????00?????????1??00?1001?01010?000?0111??0?00(0 1)0?1?10000?10??000000??10001000001??1?0010????0??????1??0????????????10?000000000?0?01??????0?01000????????00?0?000?0?1000??001000??010?0?????000200????0?01??????????????????????0?10001??????????????00???00???0?????011??0????0???0?0??10011001?0?00110100000000?2??????01001011??0???????????? CV00214 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????1100(1 2)?0110001??1000012110001000???000(1 2)11??0?????00?1?????????????????????011010?0?00101000??0??000???????000?0010?10?????0110(1 2)0?(1 2)0??00?0?001???1?(1 2)1?10111?110?00???0???0???0?0?1???????01???????0?0? D_sinensis ?0?0?000?0010???????000202??0?1??0??101300100??000?00?00?01?000???1??0?????1?0?????????????????????????????????????????00??0?00???1?????????0??0?0??????10?0100(1 2)?1?00??00010000?001000000100?000001??000?1000020??01?010??010001?000111111000000010001???1010111?000000?0101?0000111011?(0 1)002010000?200010111001110000101000?1000021001010?0????0???110011100??1 Dilophosaurus 01?1121100001000000(0 1)001000100000000?100200100??00?200100001?0001001000?1101101000000000?000000200101000001??0??0?????201100010000?1000000(0 1)1000000010000010101101??00011100100000101100000000000010101000010000201??10000100000010010010010000001010001?111011000100010010001100001100110(0 1)000?10000010001?00100110(0 1)000000000001000201002100001010110100011000?0? Dubreuillosaurus 01???100?0010101?000001001(1 2)0001??0??0??0??002??001?0????1011?001011?000000??????????10??2011100?0??110010??0??????010?0110111??201???????0000000?0100000100?1001?????????0?????????0?00??0?1??????1???????1??000?10????0110?????0???????????????????????????????????????????????????????????????????????????????11????0?0???????????1?01????????????????1?????? Duriavenator 00???100??0101011000?0?0?120?1???0?????????????????????????????????????????????????????????????????????????????????????110101????????????0000010?0??0?00100???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Elaphrosaurus ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????0110(1 2)????????00100000?011000001?0000000002111?0000011??010???????0???11?01100100001000???????????????????000111000000?111111100?(1 2)??????0?0?00001100110?00110??00010000200??21?0??????111?001???1???? Eocarcharia ?????????00000011100101002111111?0??????????????????????01?00201111???1??????????????????????????????????????????????????????????????????1000010?01?????10????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Eustreptospondylus ?1???20000011?01100000010120?1???0???????100200001??????10?10001?1??00000???0111100010??1001000100?11000012??????????00110111????????????00000?0?010000010011001???01101001000110110000010011000101?100??1?0000????1????????111?0???0111210?00???????????????????????00110101100011?011300?2?1?000001010100?1111110000110000100002011101?110102111??1001??000?? Fukuiraptor ???????????????????0?0?0????????????????????????????????????????????????????????????????????????????????????????????????0????????????????1000010?0110????00110?(1 2)????????1??????????0????0????????11??????????????????????????????12001111101?001?1010??????????????10?????10????????????????????????????????21012101?1100011??01??02????01112121??012?1???0???? Giganotosaurus 02???000??0?00?11?100001001101???10?1110100021110????????2021211??11211??0??1?00020?110121???00100?0011211?1??????111??201010?????1?1111110?0020000??00010011012?01?0??111001?01?1?00?100?11001?21?2?????2?00000???1??0?10??0???01?0????????????????????????????????00?11010010211110110201201?120020111100022011101??1?0???1001?30221010?10??????????????????? Irritator ?????2????12?0???????01100200?100010??0000010?201110010000??00011?11000????0?0???11?10??10?10010001021000?101?10?????0????????????10?11?0???1101?1???????1???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????1????????????????????????????????????????????? Leshansaurus ???????????1?1?1?001??1?0(0 1)???1????????????????????????????????????10000?????????????000000010021001??00????0??????????????????????????????00???0????????(0 1)0?1100?1?0010??0110000121?0000??0????000001100??????????????????????????????????????????????1????????????0?0??????0110?0111011?(1 2)0????????0??0??????(0 1)????100001???1?10???201110?0??????????????????0??? Lourinhanosaurus ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????1100?????????0??????1?1?000?000?0?00???1?1?0??1100000?????0?111??????????????????????????????????????????00?01010?1011111011?2?????1???0?001100??11011101?0110?????01?20?2101??????????????????????? Magnosaurus ?????????????????????????????????0?????????????????????????????????????????????????????????????????????????????????????110?11????????????0000000?0????????0???0??????????????????????????????0?????????????00????????????????????????????????????????????????????????0???01??1?????????????????0??0?????????1???????0?110?001000?20?????0?11??????????????????? Majungasaurus 0210100010000001000000010010000011120?10020000?101200000020202012?11110110110000100010100?00000010?01101?101000001010110010100110010001001010000000100001000110210011001001100012110000001010000001021?1111001201?01000011?1011?10?011002000010??????0????????????0??0011100000001111111??????0???1??1??????0????100110?100010100200211111111021111?0001??1101? Mapusaurus ??????0???00000111100001001101?101011110100021110??1111102?2121121????????(0 2)01?000?0??????????????????????????????????00201010?01001??????1000020000?0???10011012???01???1??0?0010??0001??01?00102012?????210000?????????1?11012?0????1???10?10???????0????1????????000???0?0?102?1110110(1 2)?????????0?011?100022??1101111?00?1100??30221010110??2111012101??0010? Marshosaurus 000??0000000010010001102011001?000010?000??????????0?1001?10000????1000000?10?0?01?0100020000001001?0?00?1?0???????????10001??0???1?011??00100100010000010011001?0111110001000012110000000012001101?1??????????????10???????0?1????????????1????????????????????????00?110100101011?0110010201?0000?00111000?????1??????????????????21???????0????????????????? Masiakasaurus 0?????0???00100100000100001000???0?????????10???????????0??20101?10?????????0?001??00????000?0001??00???010??????????11101000011?0??00?000100000000???0020001102?00110010011000111?000000101000000002011110001011?0100001?01011111001100100001????????????????????001001?1000000011?111111120100001001001??10011010011021000101002002?1111112021111?0011??1101? Megalosaurus ?????????0000?01101100?00110?1?000?????????????????1?111???????????????????????????????????????????????????????????????000101?????0?011000010010?01??00?100???01????????0??????1?????0?1????10002011100001?0000???010?????01110?000001112110?000010000??????????????00101010110101110113?00(1 2)??????0?10??1?0011101100001?000010000211??0?0?1????1????1001??00??? Megaraptor ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????11012????????11?0100121?0????????1??????????????110?0???????1?111011?0121????????????0101011?2?01011111110??????????????????????2????????????????????????????????????????????????????????2?11??????? Metriacanthosaurus ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????1001?????????0??0??1?1?00011?00?00012111?????1?000?0???1????1???????????????????????????????????????????00??10100101111?011??012?1?0?00?101?01?111??110?11110001??0???11??????????????????????????? Monolophosaurus 001?1000?00100??????000002000?100011101300100??0012(0 1)11000110010?11110001?021000000??1000100000010?????0????01?1??????001000010020100?0???00?0010?0??0000101110010?0010010010?0010110000000?10000101?10?0?1?000?00?010???????????????????????????????????????????????0011000101010111011?00?(1 2)0100???0001000?0??????????????????????????????????????????????????? Neovenator 00???1000001000101010000021001???10110110????????????????????????????????????????????????????????????????????1?????????110000????????????1000010001?020010011012?1?????11110100121100010001101010110?0???2100001???1?10?10?1011?0120????????????????????????????????01?11010010221110110201201?12000001?1011020?1101111000111001130221010?10???1????210111?010? Ornitholestes 000??000?00000??????000002100?1?00001000001010?0012?11000001000?1??10001?020?00??0??1000?00???0????0??0??????????????00000?0??0?0?0?0100111?000000??00001001100(1 2)?????????0100101?0?000?0001000000010100??1?00010??010??11??????????00101100000000???01??11??111??1??00?0001011121111011020????????010010000021??211??0100001???????2??0?0???????????2001??0???? Piatnitzkysaurus ??????????000?01000010020110?1???0????????????????????????????????1???0?????????????10?0100000010?1101000?10???????????2010?1????????????0010010?01?????00001001?001111000100001211000010001200?1011100001?000?0??010?????01011?112001111101100??100?1??????????????001?10100101011?011?0002?10000000011000011?11100001000001000021121010?10???1????1001??0???? Piveteausaurus ????????????????????????????????????????????????????????????????011?000?????????????1000?0?1002100??1002?110??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Poekilopleuron ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????100?0??1?????111??????????011??10110001000001????0?11????0????????????????????????????????????????????????????????10???2????0?01111021?10????????000? Proceratosaurus 000??000?00100??????000002100?1??0????????0???????201100000????????????1??20??0??0????????????????????0??????????????00(0 2)00?0??0???00??1?1?110000?0??0000000???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Saurophaganax ?????????????????????????????????????????????????????????0??????????????????????0??????????????????????????????????????????????????????????????????????????1100?1??????????0?001?1?000?0??0??????11????????00??0????????10??????????011?0101100???????????????????00001?1010010?????????20?(1 2)01?1?00??01?????210?110??01???011001?20??????????????????00???????? Shaochilong ??????????000??11?10100100110111?00???1???????????????????????????1?011?????0?00020011???1?0000100?0011??120?????????????????????????????1????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Shidaisaurus ???????????????????????????????????????????????????????????????0??11000?????????????110?0??????????0????????????????????????????????????????0??0?00???????????0??0110000???????1????001?00????012110100001?00???????0???????????????????????????????????????????????00??0?1??1???111011020?(1 2)0??00??20??0??0???????????????????????????????????????????????????? Siamotyrannus ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????0(1 2)?????????????????????????????0???1101000?0?000????010???????????????????????????????????????????????002010100102?11101122012110000??101101????????????????????????????????????????????????????? Sinraptor_dongi 00001000000000000000010002111111000110100000211000011100010001001?110000112001000200110110001001001001120100111?11111000000110020011111000000010?0?100001001100110110001001000012110001100011001211010?0?1?000?000010???1?01011100??????????????????????2???????11?00020101001010111011220121110000210110101110111011110000110000211210101101021110121011100101 Spinosaurus 110?1201011210????0??0000020??1??0?????0?????????????????????????????????????????????????????????????????????????????00110?0??011????????010110111801311?101100(1 2)??????????1000??21?0100?00???0?02010?00????000?0??0???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Streptospondylus ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????1100(1 2)????????0??0?01??1?0000010?1?0???010???????000?0??0?0?????????????????????????????????????????????????????????????????????0??1?000????????0??????????01000?01????2???????110102111????????????? Suchomimus 111102010112101?0?00000100200?1??0?????0??????????????????????????1???????????110110???????????????????????????????????110??????1????????0100101100013001011100(1 2)???????100?0001121?1110100011000201?10?0???00000???1001?0001011?0100011111100010011010????????????100011?010?1000111011000?(1 2)?0?00?000011?00?11??110100110100100??40211010?102021??0?1?????????? S_zigongensis ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????00?0??1?????00?1100(1 2)?????0010??000012110001000?1?00?011?1??0??000?100?????????01011?0???010021001000010001??2?00111111??00001010?10??1110110101(1 2)0?100?020011011111?1??0??110?000?00??201(1 2)10?0??010????????????????? Torvosaurus 00???100?0010??110110001012000??00????00?101200001?011111011000?(0 1)??????????001111?01???????????????????????????????????010?0?????????????00000100010010010011011010210010010001121100001100110001011100001110000??010?101001110000000111211000000100?0(1 2)???001101101000001010110101110113000(1 2)?1000002001010001110?1000011000010000202110101101021110?1001??0???? Tyrannotitan ?????????????????????????????????1?????????????????1111????????????????????????????????????????????????????????????????20?010?0??????????1??0?20?0????????01101?1???????1???1001?1?00??00?1?001?2?1???????000??0??????????11????01??????????????????????????????????????????????????0????0?201?????20?????0?220?1?01111?0?01???????2???????????????????????010? Xuanhanosaurus ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????1100?????????0??????1??????000?0??00??11???????1???????????????0?1???1?200?1111?01000010001102?001101?100??????????????????????????????????????????????????????????????????????????????????????????? Yangchuano_hepingensis 00001000000000??????010002111?1?000110110000211000011100010001001?110000112001000???11?12000?00?????01??????1?1??????0000001?00?001???1?000?00?000?10000100110011011000100100001211000110001?001211?1100011000100?0101?11001011100?0????????????????????????????????000010100101?1110112(1 2)0021110100210110?10110?1101111?00????????????????????????????????????? Yangchuano_magnus 0000?000000000??????000002111?1?0001101100002?1000011100010?010?1?1??0?0?120???0?0?????????????????????????0111???1??00000?1?00???1???1?0???00?0?0??00001001100(1 2)?0110001?01000012110001000?1?000111010000?0000100?010???????????????????????????????????????????????000000100101?111011010120?100?020011?11111??0101?110????100??201??0101101021??0???????????? ; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE 1 Eoraptor, 2 Herrerasaurus, 3 Acrocanthosaurus, 4 Aerosteon, 5 Afrovenator, 6 Allosaurus, 7 Angaturama, 8 Australovenator, 9 Baryonyx, 10 Carcharodontosaurus, 11 Ceratosaurus, 12 Chilantaisaurus, 13 Chuandongocoelurus, 14 Coelophysis_bauri, 15 Coelophysis_rhodesiensis, 16 Compsognathus, 17 Concavenator, 18 Condorraptor, 19 Cryolophosaurus, 20 CV00214, 21 D_sinensis, 22 Dilophosaurus, 23 Dubreuillosaurus, 24 Duriavenator, 25 Elaphrosaurus, 26 Eocarcharia, 27 Eustreptospondylus, 28 Fukuiraptor, 29 Giganotosaurus, 30 Irritator, 31 Leshansaurus, 32 Lourinhanosaurus, 33 Magnosaurus, 34 Majungasaurus, 35 Mapusaurus, 36 Marshosaurus, 37 Masiakasaurus, 38 Megalosaurus, 39 Megaraptor, 40 Metriacanthosaurus, 41 Monolophosaurus, 42 Neovenator, 43 Ornitholestes, 44 Piatnitzkysaurus, 45 Piveteausaurus, 46 Poekilopleuron, 47 Proceratosaurus, 48 Saurophaganax, 49 Shaochilong, 50 Shidaisaurus, 51 Siamotyrannus, 52 Sinraptor_dongi, 53 Spinosaurus, 54 Streptospondylus, 55 Suchomimus, 56 S_zigongensis, 57 Torvosaurus, 58 Tyrannotitan, 59 Xuanhanosaurus, 60 Yangchuano_hepingensis, 61 Yangchuano_magnus; TREE Imported_tree_0 = (1,(2,(((19,21,(13,41,(((((((3,(49,(10,29,35,58))),(17,26)),(42,(12,((4,39),(8,28))))),(6,48)),(50,59,(56,(20,61)),(40,51,52,60))),(32,(16,(43,47)))),((27,54,((5,23,31,33,45,46),(24,(38,57))),((7,30,53),(9,55))),(36,(18,44)))))),(25,(11,(34,37)))),(22,(14,15))))); END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 1 - 351; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 351; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1342193510227; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6963084638375153812; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2210316063575616614; mqVersion 275; checksumv 0 3 596345251 null getNumChars 351 numChars 351 getNumTaxa 61 numTaxa 61 short true bits 415 states 415 sumSquaresStatesOnly 307852.0 sumSquares 307852.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 172; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1196 786; setLocation 60 43; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6963084638375153812 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6963084638375153812; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1024 719; setLocation 60 43; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6963084638375153812 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1089.1342191961774.5644562070732107263; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1024 719; setLocation 60 43; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.interchange; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1,(2,((22,(14,15)),((25,(11,(34,37))),(19,21,(41,13,(((36,(44,18)),(54,27,((55,9),(53,7,30)),((24,(38,57)),(23,33,5,31,46,45)))),(((59,50,(56,(61,20)),(51,40,52,60)),((48,6),((42,(12,((8,28),(4,39)))),((26,17),(3,(49,(10,58,29,35))))))),(32,((47,43),16))))))))));'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;