#NEXUS [written Mon Jul 23 10:28:32 UYT 2012 by Mesquite version 2.75 (build 564) at Usuario-PC/164.73.56.160] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=64; TAXLABELS Ps_paraguayensis_AF309596 Ps_basiramifera_AF309595_T Ps_flavomarginata_DQ155657_T Ps_schizolobii_DQ885903_T Ps_natalensis_DQ303077_T Ps_eucalyptorum_AF309598_T Ps_norchiensis_EF394859_T UY1528 UY1436 UY1484 UY1561 Pse_luzardii_AF362057 Ps_basitruncata_DQ267601 Ps_basitruncata_DQ267600 M_acaciigena_AY752143_T M_heimii_EF394838 UY423 UY322 M_heimii_AF452516 M_heimii_EF394840 M_heimii_DQ239992_T M_konae_AY260086 M_konae_AY260085 M_heiminoides_DQ267586 M_crystallina_AY490757_T M_irregulariramosa_AF309607_T M_thailandica_AY752156_T M_colombiensis_AY752149_T M_heiminoides_AF309609_T M_walkeri_AF309616 T_africana_AF309602_T T_africana_AF283690 M_keniensis_AF309601_T T_aurantia_AY725531_T UY372 UY1382 T_aurantia_AY509742 T_aurantia_AY509744 T_aurantia_AY150331 M_microsora_DQ019352 Pa_sequoiae_GU214667 Pa_loranthi_AY348311 UY1506 M_laricina_AY152590 M_laricina_DQ019342 M_marasasii_AF309591 M_yunnanensis_DQ632686_T M_yunnanensis_DQ632688 UY1462 UY1483 M_yunnanensis_DQ632687 M_elongata_EF394833_T M_marksii_DQ267587_T M_parkii_AF309590_T M_endophytica_DQ267579_T M_scytalidii_DQ303016_T T_onhowa_AY725575_T T_pluritubularis_DQ303007_T T_molleriana_EF394844_T T_gauchensis_EU019290_T T_nubilosa_AF309618_T M_lateralis_AF309624_T M_comunis_AY725541_T N_ribis_AY236936 ; END; BEGIN CHARACTERS; TITLE 'ITS_Alignment'; DIMENSIONS NCHAR=708; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Ps_paraguayensis_AF309596 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gcc-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgacgactccgtcgccggg--cgcccccggagg----tcttc-taaac-actgc-----atct-ttg-cgtcggagtttaaa---caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcggtgtt------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtgg-atttttcaa--ttcgcttcggag--tgcggatgg-cc--------gcg-gccgttaaatctttattcaaa Ps_basiramifera_AF309595_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgacgacttggtcgccggg--cgcccccggagg----tcttc-taaac-actgc-----atct-ttg-cgtcggagtttaaa---caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcggtgtt------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtgg-atttttcaa--ttcgcttcggag--tgcggatgg-cc--------gcg-gccgttaaatctttattcaaa Ps_flavomarginata_DQ155657_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgacgactccgtcgccggg--cgcccccggagg----tcttc-taaac-actgc-----atcc-ttg-cgtcggagtttaaaa--caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcggtgtt------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtgg-atttttcaa--ttcgcttcggag--tgcgggtgg-cc--------gcg-gccgttaaatctttattcaaa Ps_schizolobii_DQ885903_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgacgactccgtcgccggg--cgcccccggagg----tcttc-taaac-actgc-----atct-ttg-cgtcggagtttaaaa--caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcggtgtt------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtgg-atttttcaa--ttcgcttcggag--tgcgggtgg-cc--------gcg-gccgttaaatctttattcaaa Ps_natalensis_DQ303077_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ac-atcttgttgcttcggggg-----------cgaccctgccggc-acttcgtcgccggg--cgcccccgaagg----tctcc--aaac-actgc-----atct-ttg-cgtcggagtttaaa---caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtc-tccggct-gagccattcgtctctaagcgttgtgg-atttttcaa--ttcgcttcggag--tgcgggtgg-cc--------gcg-gccgttaaatctttattcaaa Ps_eucalyptorum_AF309598_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ca-cacttgttgcttcggggg-----------cgaccctgccggc-acttcgtcgccggg--cgcccccggagg----tctcc--aaac-actgc-----atct-ttg-cgtcggagtttaaa---caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtc-tccgggt-gagccattcgtctctaagcgttgtgg-atttttcaa--ttcgcttcggag--tgcgggtgg-cc--------gcg-gccgttaaatctttattcaaa Ps_norchiensis_EF394859_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ac-atcttgttgcttcggggg-----------cgaccctgccggc-actttgtcgccggg--cgcccccggagg----tcttc--aaac-actgc-----atca-ttg-cgtcggagtttaaa---caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtc-tccggct-gagctgtccgtctctaagcgttgtggaatttaacta--ttcgcttcggag--cgcgggcggttc--------gcg-gccgttaaatctttattcaag UY1528 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ac-atcttgttgcttcggggg-----------cgaccctgccggc-actttgtcgccggg--cgcccccggagg----tcttc--aaac-actgc-----atca-ttg-cgtcggagtttaaa---caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtc-tccggct-gagctgtccgtctctaagcgttgtggaatttaacta--ttcgcttcggag--cgcgggcggttc--------gcg-gccgttaaatctttattcaag UY1436 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ac-atcttgttgcttcggggg-----------cgaccctgccggc-actttgtcgccggg--cgcccccggagg----tcttc--aaac-actgc-----atca-ttg-cgtcggagtttaaa---caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtc-tccggct-gagctgtccgtctctaagcgttgtggaatttaacta--ttcgcttcggag--cgcgggcggttc--------gcg-gccgttaaatctttattcaag UY1484 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ac-atcttgttgcttcggggg-----------cgaccctgccggc-actttgtcgccggg--cgcccccggagg----tcttc--aaac-actgc-----atca-ttg-cgtcggagtttaaa---caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtc-tccggct-gagctgtccgtctctaagcgttgtggaatttaacta--ttcgcttcggag--cgcgggcggttc--------gcg-gccgttaaatctttattcaag UY1561 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ac-atcttgttgcttcggggg-----------cgaccctgccggc-actttgtcgccggg--cgcccccggagg----tcttc--aaac-actgc-----atca-ttg-cgtcggagtttaaa---caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtc-tccggct-gagctgtccgtctccaagcgttgtggaatttaacta--ttcgcttcggag--cgcgggcggttc--------gcg-gccgttaaatctttattcaag Pse_luzardii_AF362057 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ac-atcttgttgcttcggggg-----------cgaccctgccggc-actttgtcgccggg--cgcccccggagg----tcttc--aaac-actgc-----atca-ttg-cgtcggagtttaaa---caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtc-tccggct-gagctgtccgtctctaagcgttgtggaattttacta--ttcgcttcggag--cgcgggcggttc--------gcg-gccgttaaatctttagtcaag Ps_basitruncata_DQ267601 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--aa-atcttgttgcttcggggg-----------cgaccctgccggc-acttcgtcgccggg--cgcccccggagg----tctccttaaac-actgc-----atct-ttg-cgtcggagtttaaaa--caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtc-tccggct-gagctgtctgtctctaagcgttgtggaatttcacgattttcgcttcggag--tgcaggcgg-cc--------gcg-gccgttaaatctttatacaag Ps_basitruncata_DQ267600 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--aa-atcttgttgcttcggggg-----------cgaccctgccggc-acttcgtcgccggg--cgcccccggagg----tctccttaaac-actgc-----atct-ttg-cgtcggagtttaaaa--caaattaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtc-tccggct-gagctgtctgtctctaagcgttgtggaatttaactattttcgcttcggag--tgcaggcgg-cc--------gcg-gccgttaaatctttatacaag M_acaciigena_AY752143_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcttc--ggt-cc-gac-----------ctccaaccctttgtgaac--cc-aacttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatt--aaac-actgc-----atca-ttg-cgtcggagtaaaag---taaattaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtcctccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgcttcggag--ttcgggtgg-cc--------gcg-gccgttaaatctttcacaagg M_heimii_EF394838 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctac--ggt-cc-gac-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatt--aaac-actgc-----atca-ttg-cgtcggagtaaaag---taaattaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgcttcggag--gtcgggtgg-cc--------gcg-gccgttaaatctttcacaagg UY423 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctac--ggt-cc-gac-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatt--aaac-actgc-----atca-ttg-cgtcggagtaaaag---taaattaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgcttcggag--gtcgggtgg-cc--------gcg-gccgttaaatctttcacaagg UY322 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctac--ggt-cc-gac-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatt--aaac-actgc-----atca-ttg-cgtcggagtaaaag---taaattaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgcttcggag--gtcgggtgg-cc--------gcg-gccgttaaatctttcacaagg M_heimii_AF452516 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctac--ggt-cc-gac-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatt--aaac-actgc-----atca-ttg-cgtcggagtaaaag---taaattaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgcttcggag--gtcgggtgg-cc--------gcg-gccgttaaatctttcacaagg M_heimii_EF394840 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctac--ggt-cc-gac-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatt--aaac-actgc-----atca-ttg-cgtcggagtaaaag---taaattaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgcttcggag--gtcgggtgg-cc--------gcg-gccgttaaatctttcacaagg M_heimii_DQ239992_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctac--ggt-cc-gac-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatt--aaac-actgc-----atca-ttg-cgtcggagtaaaag---taaattaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgcttcggag--gtcgggtgg-cc--------gcg-gccgttaaatctttcacaagg M_konae_AY260086 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctac--ggt-cc-gac-----------ctccaaccctttgtgaac--cg-aacttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatt--aaac-actgc-----atca-ttg-cgtcggagtaaaag---taaattaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgcttcggag--gtcgggtgg-cc--------gcg-gccgttaaatctttcacaagg M_konae_AY260085 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctac--ggt-cc-gac-----------ctccaaccctttgtgaac--cg-aacttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatt--aaac-actgc-----atca-ttg-cgtcggagtaaaag---taaattaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgcttcggag--gtcgggtgg-cc--------gcg-gccgttaaatctttcacaagg M_heiminoides_DQ267586 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcttc--ggt-cc-gac-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatc--aaac-actgc-----atca-ttg-cgtcggagtaaaag---taaattaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------tcgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgctttggag--gtcgggtgg-cc--------gcg-gccgttaaatctttcacaagg M_crystallina_AY490757_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcttc--ggt-cc-gac-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatt--aaac-actgc-----atca-ttg-cgtcggagttaaag---taaattaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgcttcggag--gtcgggtgg-cc--------gcg-gccgttaaatctttcacaag? M_irregulariramosa_AF309607_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcttc--ggt-cc-gac-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatt--aaac-actgc-----atca-ttg-cgtcggagttaaag---taaattaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgcttcggag--gccgggtgg-cc--------gcg-gccgttaaatctttcacaagg M_thailandica_AY752156_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcctccgggt-cc-gac-----------ctccaaccctttgtgaac--ca-atcttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatc--aaac-actgc-----atca-ttg-cgtcggagtaaaag---taaatgaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gtg------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgcttcggag--gccgggcgg-cc--------gcg-gccgttaaatctttcacaagg M_colombiensis_AY752149_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctcc-gggt-cc-gac-----------ctccaaccctttgtgaac--ca-atcttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccatc--aaac-actgc-----atca-ttg-cgtcggagtaaaag---taaatgaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gtg------ccgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgttgtggcaacta------ttcgcttcggag--gccgggcgg-cc--------gcg-gccgttaaatctttcacaagg M_heiminoides_AF309609_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcttc--ggt-cc-gac-----------ctccaaccctttgtgaac--ca-aacttgttgcttcggggg-----------cgaccctgccgct-tcggcggtgc--gg--cgcccccggagg----ccat---aaac-actgc-----atca-ttg-cgtcggagtaaaag---taaattaaacaaaactttcaacaacggatctcttggttccagcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------tcgcgcgccttaaagtcttccggct-gagctgtccgtctctaagcgatgtggcaacta------tccgctttggag--g-cgggtgg-c----------cg-gccgttaaatctttcacaagg M_walkeri_AF309616 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------accgagtga----gggcccc--ggc-cc-gac-----------ctccaaccctttgtggac--cc-aacttgttgcttcggggg-----------cgaccctgccgtc-tcggcggcgc--gg--cgcccccggagg----ccctc--aaac-actgc-----atcc-tcg-cgtcggagtctcag---taaatgaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gtg------ccgcgcgcctcaaagtcttccggct-gagctgcccgtctccaagcgttgtggcgacta------ttcgcttcgggg--cgcgggcgg-cc--------gcg-gccgttaaatctttcacaagg T_africana_AF309602_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac-----ggcggcccccggagg----tcatc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaa-ttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gtt------ccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtggcatatat-----ttcgctgaaagagttcgggacggctt--------ttg-gccgttaaatctttcttaaag T_africana_AF283690 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac-----ggcggcccccggagg----tcatc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaa-ttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gtt------ccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtggcatatat-----ttcgctgaaagagttcgggacggctt--------ttg-gccgttaaatctttcttaaag M_keniensis_AF309601_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcgca--agc-cc-gac-----------ctccaaccctttgtgaac--ca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac----gggcggcccccggagg----tcatc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaa-ttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcaaaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gtt------ccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtggcatatat-----ttcgctgaaagagttcgggacggctt--------ttg-gccgttaaatctttc--aaag T_aurantia_AY725531_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac----gg--cgcccccggagg----tcatc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gtt------ccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtggcatatat-----ttcgctgaagag--ttcggacggctt--------ttg-gccgttaaatctttcttaagg UY372 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac----gg--cgcccccggagg----tcatc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gtt------ccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtggcatatat-----ttcgctgaagag--ttcggacggctt--------ttg-gccgttaaatctttcttaagg UY1382 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac----gg--cgcccccggagg----tcatc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gtt------ccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtggcatatat-----ttcgctgaagag--ttcggacggctt--------ttg-gccgttaaatctttcttaagg T_aurantia_AY509742 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac----gg--cgcccccggagg----tcatc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gtt------ccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtggcatatat-----ttcgctgaagag--ttcggacggctt--------ttg-gccgttaaatctttcttaagg T_aurantia_AY509744 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac----gg--cgcccccggagg----tcatc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gtt------ccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtggcatatat-----ttcgctgaagag--ttcggacggctt--------ttg-gccgttaaatctttcttaagg T_aurantia_AY150331 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-ccagac-----------ctccaaccctttgtgaac--ca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac----gg--cgcccccggagg----tcatc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gtt------ccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtggcatatat-----ttcgctgaagag--ttcggacggctt--------ttg-gccgttaaatctttcttaagg M_microsora_DQ019352 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcgca--agc-cc-gac-----------ctccaaccctttgtgaac--ca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac----gg--cgcccccggagg----tcatc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gtt------ccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtgacat-tat-----ttcgctaaagag--ttcgggcggctt--------ttg-gccgttaaatctttctcaagg Pa_sequoiae_GU214667 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcgca--agc-cc-gac-----------ctccaaccctttgtgaac--ca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac----gg--cgcccccggagg----gaatc--gaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctgtggtattccgcagggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gtg---tcgccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtgattttcatt--aaatcgctgaagag--ttcgggcgg-cg--------acg-gccgttaaatcttttaacaag Pa_loranthi_AY348311 ?????att----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcgca--agc-cc-gac-----------ctccaaccctttgtgaac--ca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac----gg--cgcccccggagg----tattc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctgtggtattccgcagggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--att-----tccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtgattttcaa-----atcgctgaagag--ttcgggcgg-cg--------acg-gccgttaaatctttattcaag UY1506 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcgca--agc-cc-gac-----------ctccaaccctttgtgaac--ca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac----gg--cgcccccggagg----tattc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctgtggtattccgcagggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--att-----tccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtgattttcaa-----atcgctgaagag--ttcgggcgg-cg--------acg-gccgttaaatctttattcaag M_laricina_AY152590 ??atcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-ga------------ctccaaccctttgtgaac--ca-accctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac----gg--cgcccccggagg----tattc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctgtggtattccgcagggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gtt----ttccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtggatttttttcaaaatcgctgaagag--ttcgggcgg-cg--------acg-gccgttaaatctttattcaag M_laricina_DQ019342 ????catt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggctca--cgc-cc-gac-----------ctccaaccctttgtgaac--ca-accctgttgcttcggggg-----------cgaccccgccgtt-tcggcgac----gg--cgcccccggagg----tattc--aaac-actgc-----atct-ttg-cgtcggagtcttaaagtaaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctgtggtattccgcagggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--gtt----ttccgcgcgccttaaagtc-tccggct-gagcagttcgtctctaagcgttgtggatttttttcaaaatcgctgaagag--ttcgggcgg-cg--------acg-gccgttaaatctttattcaag M_marasasii_AF309591 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcctc-cagt-cc-gac-----------ctccaaccctttgtgaac--ca-acactgttgcttcggggg-----------cgaccctgccttt-cgggcagtg-------cgcccccggagg---atatca--aaac-gctgc-----atct-ttg-cgtcggagtatcaat--caaattgaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacggaacgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--gct------ccgcgcgcctcaaagtc-tccggctggagctgtccgtctccgagcgttgtgaatctcatt----cgcgctagggagt-cgcgggcac-ac--------gcg-gccgttaaataccccatcaaa M_yunnanensis_DQ632686_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcctc-cggt-cc-gac-----------ctccaaccctttgtgaac--ca-acactgttgcttcggggg-----------cgaccctgccttt-cgggcagtg-------cgcccccggagg---atatca--aaac-gctgc-----atct-ttg-cgtcggagtatcaat--caaattgaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--agt------ccgcgcgcctcaaagtc-tccggct-gagctgtccgtctcccagcgttgtgaatctca------ttcgctacggagt-ctcgggcag-cc--------gcg-gccgttaaacttatctaaagg M_yunnanensis_DQ632688 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcctc-cggt-cc-gac-----------ctccaaccctttgtgaac--ca-acactgttgcttcggggg-----------cgaccctgccttt-cgggcagtg-------cgcccccggagg---atatca--aaac-gctgc-----atct-ttg-cgtcggagtatcaat--caaattgaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--agt------ccgcgcgcctcaaagtc-tccggct-gagctgtccgtctcccagcgttgtgaatctca------ttcgctacggagt-ctcgggcag-cc--------gcg-gccgttaaacttatctaaagg UY1462 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagcga----gggcctc-cggt-cc-gac-----------ctccaaccctttgtgaac--ca-acactgttgcttcggggg-----------cgaccctgccttt-cgggcagtg-------cgcccccggagg---atatca--aaac-gctgc-----atct-ttg-cgtcggagtatcaat--caaattgaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--agt------ccgcgcgcctcaaagtc-tccggct-gagctgtccgtctcccagcgttgtgaatctca------ttcgctacggagt-ctcgggcag-cc--------gcg-gccgttaaacttatctaaagg UY1483 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagcga----gggcctc-cggt-cc-gac-----------ctccaaccctttgtgaac--ca-acactgttgcttcggggg-----------cgaccctgccttt-cgggcagtg-------cgcccccggagg---atatca--aaac-gctgc-----atct-ttg-cgtcggagtatcaat--caaattgaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--agt------ccgcgcgcctcaaagtc-tccggct-gagctgtccgtctcccagcgttgtgaatctca------ttcgctacggagt-ctcgggcag-cc--------gcg-gccgttaaacttatctaaagg M_yunnanensis_DQ632687 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagcga----gggcctc-cggt-cc-gac-----------ctcctaccctttgtgaac--ca-acactgttgcttcggggg-----------cgaccctgccttt-cgggcagtg-------cgcccccggagg---gaatca--aaac-gctgc-----atct-ttg-cgtcggagtatcaat--caaattgaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgtcgcg--agt------tcgcgcgcctcaaagtc-tccggct-gagctgtccgtctcccagcgttgtgaatctca------ttcgctacggagtttacgagcag-cc--------gcg-gccgttaaacttatctaaagg M_elongata_EF394833_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggttca--cgc-cc-gac-----------ctccaaccccatgtgaat--tc-ga-ctgttgcttcggggg-----------cgaccctgccgtt-----cgacggcgag--cgctcccgggga----tcatt--aaac-tctgc-----atca-ttg-cgtcggagtatcaat-caaaattgaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgccgcg--tct----cgacgcgcgcctcaaagtctcccggct-gagccgcccgtctcccagcgttgtaatatatg------atcgcttcggag--tgcgggtgg-cc--------gcg-gccgttaaactctttatcaaa M_marksii_DQ267587_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------accgagtga----gggtttc--ggc-cc-gac-----------ctccaaccctttgtgaat--ca-aacctgttgcttcggggg-----------cgaccctgccgtt-----cgcggcgcgg--cgcccccggggg----aaatc--aaac-actgc-----gtcaatttgtgtcggagtacttgt----taataaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcgagtctgactcggtattgggcgtcgcg--ttt----cgatgcgcgccttaaagtt-tccggct-ggaccgtccgtctccgagcgttgtggcatctgt-----ctcgctagggag--ccgcggagggcg--------ttg-gccgttaaacaccccatcaaa M_parkii_AF309590_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggtttc--accgcc-gac-----------ctccaaccctttgtgaac--cacaacttgttgcttcggggg-----------cgaccctgccgtt-----cgcggcatcg--cgcccccggagg----atact--taac-cctgc-----atca-ttg-cgtcggagtaatttt--attaatacataaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcgagtctgactcggtattgggcgtcgcg--gct--tccgccgcgcgcctcaaagtc-tccggct-gggcagcccgtctccgagcgttgtggcatcacagtt--ctcgctagggag--tcgcggacggcg--------tcg-gccgttaaataccccatcaaa M_endophytica_DQ267579_T ggatcattaagaattgaacagcagtgttgggcggatcagcccggccgggattacggacgggggccccttctcgcaag-ccgaggggggcgtcgatggagccatgcggcggattccgattccgtcctacggccgcttcaagcaaataattccatcgaagccccggggccctacccgcccggccaatatgg----ggatgtctccgc-ct-ggcactgttgcccattctaaccctttgtgaactaca-actctgttgcttcggggg-----------cgaccccgccgtc-tcggcggt----gg--cgctcccggtggccaattatt--aaac-tctgc-----atctcttg-cgtcggagtcttaaag-aaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctagcttggtattgggcgtcgcg--act--tcggtcgcgcgccttaaagtc-tccggct-gagcagtctgtctccgagcgttgtgatacata------ttcgctagggat--gacaggtctgtc--------gcg-gccgttaaatctttataacag M_scytalidii_DQ303016_T ggatcatt-agaattgaacagcagtgttaggcgggttagctcggccggaatcacggacgggggccccttctcgaaagagtgaggggggactatctggggccatgcggcggattccgattccgccctacggcagc--aaagtagataacgtcagctagttctcggggccctacccgcc---ggccaatga----gggtgcctccgc-ct-ggcactgttgcccattctaaccctttgtgaactaca-actctgttgcttcggggg-----------cgaccccgccgtt-tcggcggt----gg--cgctcccggtggccaatcatt--aaac-tctgc-----atctcttg-cgtcggagtcttaaag-aaatttaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttc-accactcaagcctcgcttggtattgggcgtcgcg--act--ccggtcgcgcgccttaaagtc-tccggct-gagcagtctgtctccgagcgttgtgatacata------ttcgctagggat--gacaggtctgtc--------gcg-gccgttaaatctttattacag T_onhowa_AY725575_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------accgagtga----gggctcc--ggc-cc-gac-----------ctccaaccccatgtgaatctca-cctctgttgcctcggggg-----------tgacccggccctc-tgggtgcc----gg--ggcccccggcgg---accact--caac-tctgc-----atct-gtg-cgtctgagtaaatatttgaatcaaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctggcttggtattgggcgaggcg--gcttcgcggccgcccgcctcaaagtc-tccggct-ggacggatcgtctctaagcgttgtgacttcgttgg---accgcttgcgag--tacgggacgtcc--------tcg-gccgttaaacccttttatcaa T_pluritubularis_DQ303007_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------accgagtga----gggcgcg--agc-cc-gac-----------ctccaaccccatgtctcc--caaaccatgttgcctcggggg-----------cgacccggcc-cc----gcgcc----gg--ggcccccggcgg---acccct--caac-tctgc-----atct-gtg-cgtctgagtaacgaaat-aaatcaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggagggcatgcctgttcgagcgtcattac-accactccagcctcgctgggcattgggcgccgcg--gcc-----tccgcgcgcctcgaagtc-tccggcc-gagccgaccgtctccaagcgttgtggcacaactgt---ttcgcttctggg--accggtccggcg--------ccgcgccgctaaaccctttcaccaa T_molleriana_EF394844_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagtga----gggcgca--agc-cc-gac-----------ctccaaccccatgtttcc--aa-accacgttgcctcggggg-----------cgacccggccgcc----gcgcc----gg--ggcccccggtgg---acccct--caac-tctgc-----atct-ctg-cgtctgagtcacaaaat-caatcaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggagggcatgcctgttcgagcgtcattac-accactccggcctcgctgggtattgggcgccgtg--gcc-----tccgcgcgcctcgaagtc-tccggcc-gagccgaccggctccaagcgttgtggcacaactgt---ttcgctttcggg--accggtctggcg--------gcgcgccgttaaaccctttcaccaa T_gauchensis_EU019290_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------actgagcga----gggcgcg--agc-cc-gac-----------ctccaaccccatgttttc--ca-accacgttgcctcggggg-----------cgacccggccacc----gcgcc----gg--ggcccccggcgg---acccct--caac-tctgc-----atct-ttg-cgtctgagtcacaaaataaaatcaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggagggcatgcctgttcgagcgtcattac-accactccagcctcgctgggtattgggcgccgcg--gcc-----tccgcgcgccttaatgtc-tccggcc-gagccgaccgtctctaagcgttgtggcacaactgt---ttcgctttcggg--accggtctggcg--------acgcgccgttaaaccctttcaccaa T_nubilosa_AF309618_T ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------accgagtga----gggcggc--agc-cc-gac-----------ctcctaccccatgttttc--cc-accacgttgcctcggggg-----------cgacccggccccc----gcgcc----gg--ggccctcgcaga---acccct--caacggctgg-----atct-gtg-cgt-ggagtaatacaa-ccaatcaattaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggagggcatgcctgttcgagcgtcatttc-accactccagccccgcttggtattgggcgccgcg--gcc-----tccgcgcgcctcaatgtc-tccggcc-gagccgaccgtctctcagcgttgtggcactactgt---ttcgctgacggg--gaccggtctggc--------gcgcgccgttaaaccctttcaccaa M_lateralis_AF309624_T ggatcattaccagaagacg-----------------------------------------------------------------------------------------------------------------------------------------------------------------cctcggcgg----aaacgcc--ggggcc-ttc-----------gtccaaccctttgtgaac--gtatctctattgccccggggg------------aaccccgcctgt-----catgggcgtg--ggcccccggtgg----ccaactcaaac-tctgt-----ttttattgccgtctgagtaacaaac-aaatcaaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcctgttcgagcgtcattacaaccaatccagccccgctgggtattgggcgtcgcg--gcc----tgccgcgcgcctcaaagtc-ttcggcggaagccgcccgttcctctgcgtgatgacacatc------gtcgcttgggac--acgggggtgagc------------gcccggaaaacatcggcggag M_comunis_AY725541_T ggatcattaccagaagacg-----------------------------------------------------------------------------------------------------------------------------------------------------------------ctctggcgg----aaacgcc--ggggcc-ttc-----------gtccaaccctttgtgaac--gtatctctattgccccggggg------------aaccccgcctgt-----catgggcgtg--ggcccccgccgg----ccacttcaaac-tctgt-----ttttattgccgtctgagtaacaaac-aaattaaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcctgttcgagcgtcattgcaaccaatccagccccgctgggtattgggcgtcgcg--gcc----tgccgcgcgcctcaaagtc-tacggcggaagccgcccgttcctctgcgtgatgacacatc------gtcgcttgggac--acgggggtgagc------------gcccggaaaacatcggcggag N_ribis_AY236936 ggatcatt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------accgagttgattcgagctcc--ggc-tc-gact----------ctcccacccaatgtgtac--ctacctctgttgctttggcgggccgcggtcctccgcaccggcgcccttcgggggggctggccagcgcccgccagaggaccata--aaactccagtcagtgaact-tcgcagtctgaaaaacaag--ttaataaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcatttc-aaccctcaagctctgcttggtattgggctccgtc--ctc---cacggacgcgccttaaagac-ctcggcg-gtggcgtcttgcctcaagcgtagtagaaaacac-----ctcgctttggag--cgcacggcgtcgcccgccggacgaacctttgaattatttctcaag ; END; BEGIN TREES; Title 'Fig2_NJ_ITS_tree'; LINK Taxa = Taxa; TRANSLATE 1 Ps_paraguayensis_AF309596, 2 Ps_basiramifera_AF309595_T, 3 Ps_flavomarginata_DQ155657_T, 4 Ps_schizolobii_DQ885903_T, 5 Ps_natalensis_DQ303077_T, 6 Ps_eucalyptorum_AF309598_T, 7 Ps_norchiensis_EF394859_T, 8 UY1528, 9 UY1436, 10 UY1484, 11 UY1561, 12 Pse_luzardii_AF362057, 13 Ps_basitruncata_DQ267601, 14 Ps_basitruncata_DQ267600, 15 M_acaciigena_AY752143_T, 16 M_heimii_EF394838, 17 UY423, 18 UY322, 19 M_heimii_AF452516, 20 M_heimii_EF394840, 21 M_heimii_DQ239992_T, 22 M_konae_AY260086, 23 M_konae_AY260085, 24 M_heiminoides_DQ267586, 25 M_crystallina_AY490757_T, 26 M_irregulariramosa_AF309607_T, 27 M_thailandica_AY752156_T, 28 M_colombiensis_AY752149_T, 29 M_heiminoides_AF309609_T, 30 M_walkeri_AF309616, 31 T_africana_AF309602_T, 32 T_africana_AF283690, 33 M_keniensis_AF309601_T, 34 T_aurantia_AY725531_T, 35 UY372, 36 UY1382, 37 T_aurantia_AY509742, 38 T_aurantia_AY509744, 39 T_aurantia_AY150331, 40 M_microsora_DQ019352, 41 Pa_sequoiae_GU214667, 42 Pa_loranthi_AY348311, 43 UY1506, 44 M_laricina_AY152590, 45 M_laricina_DQ019342, 46 M_marasasii_AF309591, 47 M_yunnanensis_DQ632686_T, 48 M_yunnanensis_DQ632688, 49 UY1462, 50 UY1483, 51 M_yunnanensis_DQ632687, 52 M_elongata_EF394833_T, 53 M_marksii_DQ267587_T, 54 M_parkii_AF309590_T, 55 M_endophytica_DQ267579_T, 56 M_scytalidii_DQ303016_T, 57 T_onhowa_AY725575_T, 58 T_pluritubularis_DQ303007_T, 59 T_molleriana_EF394844_T, 60 T_gauchensis_EU019290_T, 61 T_nubilosa_AF309618_T, 62 M_lateralis_AF309624_T, 63 M_comunis_AY725541_T, 64 N_ribis_AY236936; TREE nj = ((((((((((1:0.00258,2:0.00211):0.00227,4:7.895E-5):9.5E-4,3:0.0014):0.00766,(((5:0.00734,6:0.00909):0.0088,(13:0.00205,14:2.9E-4):0.0088):0.00257,(((((7:0.0,8:0.0):0.0,9:0.0):0.0,10:0.0):2.5E-4,11:0.0021):3.6E-4,12:0.00199):0.00946):0.00319):0.01692,(((15:0.00389,(((16:0.0,(17:0.0,(18:0.0,(19:0.0,(20:0.0,21:0.0):0.0):0.0):0.0):0.0):3.8E-4,(22:0.0,23:0.0):0.00197):0.0018,((24:1.512E-6,29:0.00469):0.00473,(25:0.00232,26:2.501E-5):0.00231):2.7E-4):6.9E-4):0.00622,(27:0.00308,28:0.00162):0.00433):0.01749,30:0.03561):0.01247):0.00767,(((((31:0.0,32:0.0):9.7E-4,33:0.00607):0.01208,(((((34:0.0,35:0.0):0.0,36:0.0):0.0,37:0.0):0.0,38:0.0):0.0,39:0.0):0.0020):0.00246,40:0.00693):0.00717,((41:0.00881,(42:4.5E-4,43:-4.5E-4):0.00538):0.00701,(44:-1.9E-4,45:1.9E-4):0.00485):0.01053):0.0233):0.0033,((46:0.03088,(((47:0.0,48:0.0):9.218E-5,(49:0.0,50:0.0):0.00226):0.00116,51:0.01057):0.01489):0.0254,(55:0.01671,56:0.00911):0.05734):0.00245):0.00441,(52:0.05453,(53:0.03983,54:0.03294):0.0382):0.00503):0.01624,(57:0.05832,((58:0.02126,(59:0.02032,60:0.01019):0.00339):0.01561,61:0.04777):0.03323):0.01116):0.01437,(62:0.00876,63:0.01236):0.10904,64:0.14331); END; BEGIN TREES; Title 'Maximun_parsimony_ITS_Tree'; LINK Taxa = Taxa; TRANSLATE 1 Ps_paraguayensis_AF309596, 2 Ps_basiramifera_AF309595_T, 3 Ps_flavomarginata_DQ155657_T, 4 Ps_schizolobii_DQ885903_T, 5 Ps_natalensis_DQ303077_T, 6 Ps_eucalyptorum_AF309598_T, 7 Ps_norchiensis_EF394859_T, 8 UY1528, 9 UY1436, 10 UY1484, 11 UY1561, 12 Pse_luzardii_AF362057, 13 Ps_basitruncata_DQ267601, 14 Ps_basitruncata_DQ267600, 15 M_acaciigena_AY752143_T, 16 M_heimii_EF394838, 17 UY423, 18 UY322, 19 M_heimii_AF452516, 20 M_heimii_EF394840, 21 M_heimii_DQ239992_T, 22 M_konae_AY260086, 23 M_konae_AY260085, 24 M_heiminoides_DQ267586, 25 M_crystallina_AY490757_T, 26 M_irregulariramosa_AF309607_T, 27 M_thailandica_AY752156_T, 28 M_colombiensis_AY752149_T, 29 M_heiminoides_AF309609_T, 30 M_walkeri_AF309616, 31 T_africana_AF309602_T, 32 T_africana_AF283690, 33 M_keniensis_AF309601_T, 34 T_aurantia_AY725531_T, 35 UY372, 36 UY1382, 37 T_aurantia_AY509742, 38 T_aurantia_AY509744, 39 T_aurantia_AY150331, 40 M_microsora_DQ019352, 41 Pa_sequoiae_GU214667, 42 Pa_loranthi_AY348311, 43 UY1506, 44 M_laricina_AY152590, 45 M_laricina_DQ019342, 46 M_marasasii_AF309591, 47 M_yunnanensis_DQ632686_T, 48 M_yunnanensis_DQ632688, 49 UY1462, 50 UY1483, 51 M_yunnanensis_DQ632687, 52 M_elongata_EF394833_T, 53 M_marksii_DQ267587_T, 54 M_parkii_AF309590_T, 55 M_endophytica_DQ267579_T, 56 M_scytalidii_DQ303016_T, 57 T_onhowa_AY725575_T, 58 T_pluritubularis_DQ303007_T, 59 T_molleriana_EF394844_T, 60 T_gauchensis_EU019290_T, 61 T_nubilosa_AF309618_T, 62 M_lateralis_AF309624_T, 63 M_comunis_AY725541_T, 64 N_ribis_AY236936; TREE MajRule = (64,(((((((1,(3,4)),2),(5,6)),((7,8,9,10,11,12),(13,14))),((((15,16,17,18,19,20,21,22,23,(25,26)),(24,29)),27,28),30)),((((((31,32),33),(34,35,36,37,38,39)),40),((41,(44,45)),(42,43))),(55,56)),(46,(47,48,49,50,51)),(52,(53,54))),(57,(((58,59),60),61))),(62,63)); END; begin paup; default lscores longfmt = yes; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 708; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 708; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 708; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1343050112937; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2935321842045149943; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8820332338964572013; mqVersion 275; checksumv 0 3 4155498640 null getNumChars 708 numChars 708 getNumTaxa 64 numTaxa 64 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 634644.0 sumSquares -2.010695104034341E22 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2935321842045149943 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2935321842045149943; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2935321842045149943 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 985.1342895704858.1920312637398262273; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(64:0.071655,((62:0.00876,63:0.01236):0.10904,((57:0.05832,(61:0.04777,(58:0.02126,(59:0.02032,60:0.01019):0.00339):0.01561):0.03323):0.01116,((52:0.05453,(53:0.03983,54:0.03294):0.0382):0.00503,(((55:0.01671,56:0.00911):0.05734,(46:0.03088,(51:0.01057,((47:0.0,48:0.0):9.218E-5,(49:0.0,50:0.0):0.00226):0.00116):0.01489):0.0254):0.00245,((((44:-1.9E-4,45:1.9E-4):0.00485,(41:0.00881,(42:4.5E-4,43:-4.5E-4):0.00538):0.00701):0.01053,(40:0.00693,((33:0.00607,(31:0.0,32:0.0):9.7E-4):0.01208,(39:0.0,(38:0.0,(37:0.0,(36:0.0,(34:0.0,35:0.0):0.0):0.0):0.0):0.0):0.0020):0.00246):0.00717):0.0233,(((3:0.0014,(4:7.895E-5,(1:0.00258,2:0.00211):0.00227):9.5E-4):0.00766,(((5:0.00734,6:0.00909):0.0088,(13:0.00205,14:2.9E-4):0.0088):0.00257,(12:0.00199,(11:0.0021,(10:0.0,(9:0.0,(7:0.0,8:0.0):0.0):0.0):2.5E-4):3.6E-4):0.00946):0.00319):0.01692,(30:0.03561,((27:0.00308,28:0.00162):0.00433,(15:0.00389,(((24:1.512E-6,29:0.00469):0.00473,(25:0.00232,26:2.501E-5):0.00231):2.7E-4,((22:0.0,23:0.0):0.00197,(16:0.0,(17:0.0,(18:0.0,(19:0.0,(20:0.0,21:0.0):0.0):0.0):0.0):0.0):3.8E-4):0.0018):6.9E-4):0.00622):0.01749):0.01247):0.00767):0.0033):0.00441):0.01624):0.01437):0.071655);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #2935321842045149943 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; toggleUseWeights off; endTell; setAssignedID 1015.1342895709398.3456060993846311188; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8820332338964572013 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #8820332338964572013 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels; newAssistant #mesquite.lists.CharListCodonPos.CharListCodonPos; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; showPage 1; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;