#NEXUS [written Wed Apr 18 15:30:46 JST 2012 by Mesquite version 2.75 (build 566) at MRC-no-MacBook-Pro.local/192.168.65.168] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=28; TAXLABELS 'Lecanicillium primulinum FKI-6172' 'Lecanicillium primulinum FKI-6618' 'Lecanicillium primulinum FKI-6715' Lecanicillium_sp._NBRC104292 Lecanicillium_sp._CBS_639.85 Lecanicillium_sp._NBRC104293 Lecanicillium_lecanii Lecanicillium_longisporum Lecanicillium_saksenae Lecanicillium_aranearum Lecanicillium_araneicola Lecanicillium_antillanum Lecanicillium_dimorphum Lecanicillium_fusisporum Lecanicillium_attenuatum Lecanicillium_psalliotae Lecanicillium_tenuipes Lecanicillium_kalimantanense Lecanicillium_wallacei Cordyceps_militaris Cordyceps_pseudomilitaris Cordyceps_cardinalis Cordyceps_piperis Simplicillium_lanosoniveum Simplicillium_obclavatum Simplicillium_lamellicola Metacordyceps_chlamydosporia Conideocrella_luteorostrata ; END; BEGIN CHARACTERS; TITLE 'Lecanicillium_primulinum_D1D2_Alignment'; DIMENSIONS NCHAR=571; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Lecanicillium primulinum FKI-6172' TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCCTAGGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGAGGCGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATGCCAAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCATTGTGTAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC 'Lecanicillium primulinum FKI-6618' TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCCTAGGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGAGGCGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATGCCAAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCATTGTGTAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC 'Lecanicillium primulinum FKI-6715' TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCCTAGGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGAGGCGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATGCCAAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCATTGTGTAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Lecanicillium_sp._NBRC104292 TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCCTAGGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGAGGCGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATGCCAAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCATTGCGTAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGAC------------------- Lecanicillium_sp._CBS_639.85 ------------------------------------------TGAAATCTGGCCCCTAGGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGAGGCGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATGCCAAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCATTGCGTAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Lecanicillium_sp._NBRC104293 TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCCTAGGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGAGGCGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATGCCAAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCATTGCGTAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGAC------------------- Lecanicillium_lecanii TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCCCCGGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGACACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCACTGCGCAATACCCTGCGCCGGACTGAGGCACGCGCATC-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Lecanicillium_longisporum ------------------------------------------------------------------------------AGAGGATGCTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATA?AGGGTGAGAGCCCCGTCTGGTCGGACACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGAGAAAGGCTCTGGGAATGTGGCTCCTCCGGGAGTGTTATAGCCCACTGCGTAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Lecanicillium_saksenae --------------------------------------------------GGCCTTC-GGG-CCGAGTTGTAATTTGTAGAGGATACTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATACCAAGCCTCTGTAAAGTTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCATTGTGTAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Lecanicillium_aranearum TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCCCAGGGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCAAGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGACACCGCGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGACAAAGGCGTTGGGAATGTGGCTCCCCCGGGAGTGTTATAGCCCATCGCGCAATACCCTGCGCCGGACTGAGGTACGCGCATC-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Lecanicillium_araneicola TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGTCCCCAAGGCCCGAATTGTAATTTGTAGAGGATGCTTTTGGCAAGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCATTGCGCAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGAC------------------- Lecanicillium_antillanum TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGTCCCCAGGGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGACACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGACTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCATCGTGCAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Lecanicillium_dimorphum --------------------------------------------------GGCCCTC-GGGTCCGAATTG?AATTTGTAGAGGATACTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATA?AGGGTGAGAGCCCCGTCTGGTCGGATACCAAGCCTCTGTAAAGTTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCTCCGGGAGTGTTATAGCCCATTGCGTAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Lecanicillium_fusisporum TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGTCCCCAGGGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCAAGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATACCGCGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCATTGCGCAATACCCTGCGCCGGACTGAGGTACGCGCATTTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Lecanicillium_attenuatum -----------------------------------------------TCTGGCCCTT-GGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATA?AGGGTGAGAGCCCCGTCTGGTCGGACACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGAAAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCATTGTGTAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Lecanicillium_psalliotae -------------------------------------------------------------------------------------------------GTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATA?AGGGTGAGAGCCCCGTCTGGTCGGATACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAACCCATTGCGCAATACCCTGCGCCGGACTGAGGTACGCGCATC-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Lecanicillium_tenuipes TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGTCCCCAGGGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCC?CGTCTGGTCGGATACCTAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCATTGTGTAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Lecanicillium_kalimantanense TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCCTAGGGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGAGGCGCCTTCCGAGTTCCCTGGAAC-GGGACGCCACAGAGGGTGAGAGCCCCGTCTGGTCGGATGCCAAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGTACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGTTTCGGGAACGTGGCTCCCTCGGGAGTGTTATAGCCCGTTGCGTAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGC----------------------------------------- Lecanicillium_wallacei TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCCTAGGGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGAGGCGCCTTCCGAGTTCCCTGGAAC-GGGACGCCACAGAGGGTGAGAGCCCCGTCTGGTCGGATGCCAAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGTTTCGGGAACGTGGCTCCCTCGGGAGTGTTATAGCCCGTTGCGTAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Cordyceps_militaris TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCCC-GGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGACACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCACCCAGCGTTCTCGCTGGTGCACTTCGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGAGAAAGGCTTCGGGAATGTGGCTCCCCCGGGAGTGTTATAGCCCGTTGCGCAATACCCTGCGCTGGACTGAGGTACGCGCATTCGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Cordyceps_pseudomilitaris TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGTCCCCAGGGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGCGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATGCCTAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCCATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTCTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCACTGCGCAATACCCTGCGCCGGACTGAGGTACGCGCATC-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Cordyceps_cardinalis TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCCCAGGGCCCGAGTTGTAATTTGTAGAGGATGCTTTGGGCGCGGCGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATGCCTAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTTGGGCCCGGTGAATCATCTAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTCGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCCCGGGAGTGTTATAGCCCACTGCGTAATGCCCTGCGCCGGACTGAGGTACGCGCATC-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Cordyceps_piperis TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCTC-GGGTCCGAGTTGTAATTTGTAGAGGATGCTTTGGGCGAGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGACACCGAGCCTGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCGTTGGGAACGTGGCTCCCCCGGGAGTGTTATAGCCCATCGCGCAATACCCTGCGCCGGACTGAGGTACGCGCATT-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Simplicillium_lanosoniveum ------------------------------------AAA-TTTGAAATCTGGCTCCTAGAGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGATGCGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATGCCAAATCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGG-GAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGTCTTGGGGGAAAAAGGCTTTGGGAACGTGGCTCCTTCGGGAGTGTTATAGACCATTGCATAATACCCTGGGACGGACTGAGGTTCGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Simplicillium_obclavatum TTG-CCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTTGAAATCTGGCTCCCAGAGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGATGCGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATGCCAAATCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGTCTTGGGGGAAAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGACCATTGCATAATACCCTGGGACGGACTGAGGTTCGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Simplicillium_lamellicola ------------------------------------AAA-TTTGAAATCTGGCTCCTAGAGTCCGAATTGTAATTTGCAGAGGATGCTTTTGATGCGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATGCCAAATCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGCCTTGGGGGAAAAAGGCTTTGGGAATGTAGCTCCCTCGGGAGTGTTATAGACCATTGCACAATACCCTGGGGCGGACTGAGGTTCGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACC Metacordyceps_chlamydosporia TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCCTAGGGCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGATGCCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCACTTATGACCAGACTTGGACCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCTCAGGCCAGCATCAGTTTGCCTCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAGCCCATTGCACAATACCCTGGGGCGGACTGAGGTTCGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGTGACCCGTCTTGAAACACGGACC Conideocrella_luteorostrata TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAA-TTTGAAATCTGGCCCCCAGGGCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAAC-GGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGATACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCCCAGGCCAGCATCAGTTTGCCTCGGGGGATAAAGGCTCTGGGAATGTGGCTCCTCCGGGAGTGTTATAGCCCGTTGCACAATGCCCTGGGGCGGACTGAGGTTCGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGGCCCGTCTTGAAACACGGACC ; END; BEGIN TREES; Title 'Lecaniicllium_primulium_D1D2_ML_Tree'; LINK Taxa = Taxa; TRANSLATE 1 'Lecanicillium primulinum FKI-6172', 2 'Lecanicillium primulinum FKI-6618', 3 'Lecanicillium primulinum FKI-6715', 4 Lecanicillium_sp._NBRC104292, 5 Lecanicillium_sp._CBS_639.85, 6 Lecanicillium_sp._NBRC104293, 7 Lecanicillium_lecanii, 8 Lecanicillium_longisporum, 9 Lecanicillium_saksenae, 10 Lecanicillium_aranearum, 11 Lecanicillium_araneicola, 12 Lecanicillium_antillanum, 13 Lecanicillium_dimorphum, 14 Lecanicillium_fusisporum, 15 Lecanicillium_attenuatum, 16 Lecanicillium_psalliotae, 17 Lecanicillium_tenuipes, 18 Lecanicillium_kalimantanense, 19 Lecanicillium_wallacei, 20 Cordyceps_militaris, 21 Cordyceps_pseudomilitaris, 22 Cordyceps_cardinalis, 23 Cordyceps_piperis, 24 Simplicillium_lanosoniveum, 25 Simplicillium_obclavatum, 26 Simplicillium_lamellicola, 27 Metacordyceps_chlamydosporia, 28 Conideocrella_luteorostrata; TREE Imported_tree_0 = ((28:0.05725,27:0.01996):0.05268,((26:0.02744,(24:0.01736,25:0.01366)60:0.01751)93:0.07441,((((9:0.01056,13:0.01614)74:0.01839,((17:0.00635,(21:0.01171,22:0.05024)76:0.02265)42:0.01228,(12:0.02055,((10:0.0371,14:0.0)37:0.01009,(11:0.00959,16:0.01281)1:3.7E-4)14:0.00572)26:0.00192)25:0.0118)28:0.0,((23:0.03772,(8:0.02192,20:0.03457)43:0.00803)25:0.00398,(7:0.02805,15:0.02341)27:0.0)12:0.01398)18:0.01258,(((18:0.00512,19:0.0)100:0.03749,(6:0.0,(4:0.0,5:0.0)39:0.0)77:0.0)23:0.0,(3:0.0,(1:0.0,2:0.0)15:0.0)58:0.00494)77:0.01567)92:0.06067):0.00277)99; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 571; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 571; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 571; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1334730646823; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1331877106228507709; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6882261819029072267; mqVersion 275; checksumv 0 3 550267615 null getNumChars 571 numChars 571 getNumTaxa 28 numTaxa 28 short true bits 15 states 15 sumSquaresStatesOnly 309953.0 sumSquares 309953.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 282; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1127 668; setLocation 50 75; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1331877106228507709 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1331877106228507709; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 228; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 845 601; setLocation 50 75; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1331877106228507709 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 832.1334710534316.2822707358484685439; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 845 601; setLocation 50 75; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((27:0.01996,28:0.05725):0.02634,((26:0.02744,(24:0.01736,25:0.01366)60:0.01751)93:0.07441,(((18:0.00512,19:0.0)100:0.03749,((3:0.0,(1:0.0,2:0.0)15:0.0)58:0.00494,(6:0.0,(4:0.0,5:0.0)39:0.0)77:0.0)23:0.0)77:0.01567,((9:0.01056,13:0.01614)74:0.01839,(((7:0.02805,15:0.02341)27:0.0,(23:0.03772,(8:0.02192,20:0.03457)43:0.00803)25:0.00398)12:0.01398,(((10:0.0371,14:0.0)37:0.01009,(11:0.00959,16:0.01281)1:3.7E-4)14:0.00572,(12:0.02055,(22:0.05024,(17:0.00635,21:0.01171)76:0.02265)42:0.01228)26:0.00192)25:0.0118)28:0.0)18:0.01258)92:0.06344):0.02634);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6882261819029072267 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 845 601; setLocation 50 75; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;