#NEXUS [written Tue Apr 16 17:38:18 EDT 2013 by Mesquite version 2.75 (build 566) at Simba.local/10.0.0.10] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=38; TAXLABELS Fennellomyces_linderi_FJ713096 Fennellomyces_linderi_GQ249890 Lichtheimia_brasiliensis_KC740488 Lichtheimia_brasiliensis_KC740487 Lichtheimia_brailiensis_KC740489 Lichtheimia_brasiliensis_KC740486 Dichotomocladium_elegans_HM999950 Lichtheimia_ramosa_HQ285654 Lichtheimia_ramosa_FJ719405 Lichtheimia_ramosa_JF796106 Lichtheimia_ramosa_EU852634 Lichtheimia_ramosa_EU409804 Lichtheimia_ramosa_EU409801 Lichtheimia_ramosa_HQ285674 Lichtheimia_ramosa__HQ647301 Lichtheimia_ramosa_HQ285700 Lichtheimia_ramosa_FJ719406 Lichtheimia_ramosa_GQ342875 Lichtheimia_ramosa_GQ342874 Lichtheimia_sphaerocystis_GQ342899 Lichtheimia_sphaerocystis_GQ342901 Lichtheimia_sphaerocystis_GQ342900 Lichtheimia_ramosa_EU852633 Lichtheimia_hyalospora_AY944894 Lichtheimia_hyalospora_AY944893 Lichtheimia_hyalospora_GQ342898 Lichtheimia_hyalospora_AY944892 Lichtheimia_hyalospora_EF030530 Lichtheimia_hyalospora_GQ342894 Lichtheimia_hyalospora_GQ342895 Lichtheimia_corymbifera_GQ342888 Lichtheimia_corymbifera_HM104200 Lichtheimia_corymbifera_HM104221 Lichtheimia_corymbifera_GQ342878 Lichtheimia_corymbifera_GQ342889 Lichtheimia_ornata_GQ342892 Lichtheimia_ornata_GQ342890 Lichtheimia_ornata_GQ342891 ; END; BEGIN CHARACTERS; TITLE Lichtheimia_5.8s; DIMENSIONS NCHAR=173; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Fennellomyces_linderi_FJ713096 AAAACAACTTTTAGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Fennellomyces_linderi_GQ249890 AAAACAACTTTTAGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_brasiliensis_KC740488 AAA-CAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_brasiliensis_KC740487 AAA-CAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_brailiensis_KC740489 AAA-CAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_brasiliensis_KC740486 AAA-CAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Dichotomocladium_elegans_HM999950 AAAACAACTCTTAGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ramosa_HQ285654 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ramosa_FJ719405 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ramosa_JF796106 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ramosa_EU852634 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ramosa_EU409804 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ramosa_EU409801 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ramosa_HQ285674 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCAATGAAGAGCG Lichtheimia_ramosa__HQ647301 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ramosa_HQ285700 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ramosa_FJ719406 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ramosa_GQ342875 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ramosa_GQ342874 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_sphaerocystis_GQ342899 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_sphaerocystis_GQ342901 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_sphaerocystis_GQ342900 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ramosa_EU852633 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_hyalospora_AY944894 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_hyalospora_AY944893 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_hyalospora_GQ342898 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_hyalospora_AY944892 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_hyalospora_EF030530 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_hyalospora_GQ342894 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_hyalospora_GQ342895 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_corymbifera_GQ342888 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_corymbifera_HM104200 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_corymbifera_HM104221 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_corymbifera_GQ342878 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_corymbifera_GQ342889 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ornata_GQ342892 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ornata_GQ342890 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCG Lichtheimia_ornata_GQ342891 AAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGARCG Fennellomyces_linderi_FJ713096 TAGCAAATTGCGATAATTAGTGCGAATTGCAGACTTTGTGAATCATCGAG Fennellomyces_linderi_GQ249890 TAGCAAATTGCGATAATTAGTGCGAATTGCAGACTTTGTGAATCATCGAG Lichtheimia_brasiliensis_KC740488 TAGCAAAGTGCGATAATTATTGCGACTTGCATCCATAGTGAATCATCGAG Lichtheimia_brasiliensis_KC740487 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_brailiensis_KC740489 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_brasiliensis_KC740486 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Dichotomocladium_elegans_HM999950 TAGCAAAGTGCGATAATTAATGCGACTTGCATACATTGCGAATCATCGAG Lichtheimia_ramosa_HQ285654 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGCGAATCATCGAG Lichtheimia_ramosa_FJ719405 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGCGAATCATCGAG Lichtheimia_ramosa_JF796106 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGCGAATCATCGAG Lichtheimia_ramosa_EU852634 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGCGAATCATCGAG Lichtheimia_ramosa_EU409804 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGCGAATCATCGAG Lichtheimia_ramosa_EU409801 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGCGAATCATCGAG Lichtheimia_ramosa_HQ285674 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGCGAATCATCGAG Lichtheimia_ramosa__HQ647301 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGCGAATCATCGAG Lichtheimia_ramosa_HQ285700 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGCGAATCATCGAG Lichtheimia_ramosa_FJ719406 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGCGAATCATCGAG Lichtheimia_ramosa_GQ342875 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGCGAATCATCGAG Lichtheimia_ramosa_GQ342874 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGCGAATCATCGAG Lichtheimia_sphaerocystis_GQ342899 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_sphaerocystis_GQ342901 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_sphaerocystis_GQ342900 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_ramosa_EU852633 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGCGAATCATCGAG Lichtheimia_hyalospora_AY944894 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_hyalospora_AY944893 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_hyalospora_GQ342898 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_hyalospora_AY944892 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_hyalospora_EF030530 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_hyalospora_GQ342894 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_hyalospora_GQ342895 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_corymbifera_GQ342888 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_corymbifera_HM104200 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_corymbifera_HM104221 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_corymbifera_GQ342878 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_corymbifera_GQ342889 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_ornata_GQ342892 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_ornata_GQ342890 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Lichtheimia_ornata_GQ342891 TAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAG Fennellomyces_linderi_FJ713096 TTCTTGAACGCACCTTGCACCTAGTGGTTTATTCTACTAGGTACGGTTGT Fennellomyces_linderi_GQ249890 TTCTTGAACGCACCTTGCACCTAGTGGTTTATTCTACTAGGTACGGTTGT Lichtheimia_brasiliensis_KC740488 TTCTTGAACGCATCTTGCACCTAGTGGTTTAT-CCACTAGGTACGGTTGT Lichtheimia_brasiliensis_KC740487 TTCTTGAACGCATCTTGCACCTAGTGGTTTAT-CCACTAGGTACGGTTGT Lichtheimia_brailiensis_KC740489 TTCTTGAACGCATCTTGCACCTAGTGGTTTAT-CCACTAGGTACGGTTGT Lichtheimia_brasiliensis_KC740486 TTCTTGAACGCATCTTGCACCTAGTGGTTTAT-CCACTAGGTACGGTTGT Dichotomocladium_elegans_HM999950 TTCTTGAACGCACCTTGCACCTGGAGGTTCTT-CCTCCAGGTATGGTTGT Lichtheimia_ramosa_HQ285654 TTCTCGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ramosa_FJ719405 TTCTCGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ramosa_JF796106 TTCTCGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ramosa_EU852634 TTCTCGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ramosa_EU409804 TTCTCGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ramosa_EU409801 TTCTCGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ramosa_HQ285674 TTCTCGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ramosa__HQ647301 TTCTCGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ramosa_HQ285700 TTCTCGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ramosa_FJ719406 TTCTCGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ramosa_GQ342875 TTCTCGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ramosa_GQ342874 TTCTCGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_sphaerocystis_GQ342899 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_sphaerocystis_GQ342901 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_sphaerocystis_GQ342900 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ramosa_EU852633 TTCTCGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_hyalospora_AY944894 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CCACTAGGCACAGTTGT Lichtheimia_hyalospora_AY944893 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_hyalospora_GQ342898 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_hyalospora_AY944892 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACGGTTGT Lichtheimia_hyalospora_EF030530 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACGGTTGT Lichtheimia_hyalospora_GQ342894 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACGGTTGT Lichtheimia_hyalospora_GQ342895 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACGGTTGT Lichtheimia_corymbifera_GQ342888 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_corymbifera_HM104200 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_corymbifera_HM104221 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_corymbifera_GQ342878 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_corymbifera_GQ342889 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ornata_GQ342892 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ornata_GQ342890 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Lichtheimia_ornata_GQ342891 TTCTTGAACGCATCTTGCGCCTAGTAGTCAAT-CTACTAGGCACAGTTGT Fennellomyces_linderi_FJ713096 TTCAGTATC-ACAAA-AC---TC Fennellomyces_linderi_GQ249890 TTCAGTATC-ACAAA-AC---TC Lichtheimia_brasiliensis_KC740488 TTCAGTATCTGCAACTACCAAAC Lichtheimia_brasiliensis_KC740487 TTCAGTATCTGCAACTACCAAAC Lichtheimia_brailiensis_KC740489 TTCGGTATCTGCAACTACCAAAC Lichtheimia_brasiliensis_KC740486 TTCAGTATCTGCAACTACCAAAC Dichotomocladium_elegans_HM999950 TTCAGTATTCACAAA-AC---TC Lichtheimia_ramosa_HQ285654 TTCAGTATCTGCAACTACCAATC Lichtheimia_ramosa_FJ719405 TTCAGTATCTGCAACTACCAATC Lichtheimia_ramosa_JF796106 TTCAGTATCTGCAACTACCAATC Lichtheimia_ramosa_EU852634 TTCAGTATCTGCAACTACCAATC Lichtheimia_ramosa_EU409804 TTCAGTATCTGCAACTACCAATC Lichtheimia_ramosa_EU409801 TTCAGTATCTGCAACTACCAATC Lichtheimia_ramosa_HQ285674 TTCAGTATCTGCAACTACCAATC Lichtheimia_ramosa__HQ647301 TTCAGTATCTGCAACTACCAATC Lichtheimia_ramosa_HQ285700 TTCAGTATCTGCAACTACCAATC Lichtheimia_ramosa_FJ719406 TTCAGTATCTGCAACTACCAATC Lichtheimia_ramosa_GQ342875 TTCAGTATCTGCAACTACCAATC Lichtheimia_ramosa_GQ342874 TTCAGTATCTGCAACTACCAATC Lichtheimia_sphaerocystis_GQ342899 TTCAGTATCATTTTACACCAATC Lichtheimia_sphaerocystis_GQ342901 TTCAGTATCATTTTACACCAATC Lichtheimia_sphaerocystis_GQ342900 TTCAGTATCATTTTACACCAATC Lichtheimia_ramosa_EU852633 TTCAGTATCTGCAACTACCAATC Lichtheimia_hyalospora_AY944894 TTCAGTATC-ATCCTAACCAATC Lichtheimia_hyalospora_AY944893 TTCAGTATC-ATCCTAACCAATC Lichtheimia_hyalospora_GQ342898 TCCAGTATC-ATCCTAACCAATC Lichtheimia_hyalospora_AY944892 TTCAGTATC-ATCCTAACCAATC Lichtheimia_hyalospora_EF030530 TTCAGTATC-ATCCTAACCAATC Lichtheimia_hyalospora_GQ342894 TTCAGTATC-ATCCTAACCAATC Lichtheimia_hyalospora_GQ342895 TTCAGTATC-ATCCTAACCAATC Lichtheimia_corymbifera_GQ342888 TTCAGTATCTGCATCCACCAATC Lichtheimia_corymbifera_HM104200 TTCAGTATCTGCATCCACCAATC Lichtheimia_corymbifera_HM104221 TTCAGTATCTGCATCCACCAATC Lichtheimia_corymbifera_GQ342878 TTCAGTATCTGCATCCACCAATC Lichtheimia_corymbifera_GQ342889 TTCAGTATCTGCATCCACCAATC Lichtheimia_ornata_GQ342892 TTCAGTATCTGCATCCACCAATC Lichtheimia_ornata_GQ342890 TTCAGTATCTGCATCCACCAATC Lichtheimia_ornata_GQ342891 TTCTGTATCTGCATCCACCAATC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 173; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 173; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 173; END; BEGIN TREES; Title Lichtheimia_5.8s_bayesian; LINK Taxa = Taxa; TRANSLATE 1 Fennellomyces_linderi_FJ713096, 2 Fennellomyces_linderi_GQ249890, 3 Lichtheimia_brasiliensis_KC740488, 4 Lichtheimia_brasiliensis_KC740487, 5 Lichtheimia_brailiensis_KC740489, 6 Lichtheimia_brasiliensis_KC740486, 7 Dichotomocladium_elegans_HM999950, 8 Lichtheimia_ramosa_HQ285654, 9 Lichtheimia_ramosa_FJ719405, 10 Lichtheimia_ramosa_JF796106, 11 Lichtheimia_ramosa_EU852634, 12 Lichtheimia_ramosa_EU409804, 13 Lichtheimia_ramosa_EU409801, 14 Lichtheimia_ramosa_HQ285674, 15 Lichtheimia_ramosa__HQ647301, 16 Lichtheimia_ramosa_HQ285700, 17 Lichtheimia_ramosa_FJ719406, 18 Lichtheimia_ramosa_GQ342875, 19 Lichtheimia_ramosa_GQ342874, 20 Lichtheimia_sphaerocystis_GQ342899, 21 Lichtheimia_sphaerocystis_GQ342901, 22 Lichtheimia_sphaerocystis_GQ342900, 23 Lichtheimia_ramosa_EU852633, 24 Lichtheimia_hyalospora_AY944894, 25 Lichtheimia_hyalospora_AY944893, 26 Lichtheimia_hyalospora_GQ342898, 27 Lichtheimia_hyalospora_AY944892, 28 Lichtheimia_hyalospora_EF030530, 29 Lichtheimia_hyalospora_GQ342894, 30 Lichtheimia_hyalospora_GQ342895, 31 Lichtheimia_corymbifera_GQ342888, 32 Lichtheimia_corymbifera_HM104200, 33 Lichtheimia_corymbifera_HM104221, 34 Lichtheimia_corymbifera_GQ342878, 35 Lichtheimia_corymbifera_GQ342889, 36 Lichtheimia_ornata_GQ342892, 37 Lichtheimia_ornata_GQ342890, 38 Lichtheimia_ornata_GQ342891; TREE 'PHYLIP 1+' = ((1:0.05585,2:0.056301):0.2199375,(7:0.685068,((3:0.110391,4:0.106601,5:0.055291,6:0.057602)0.68:0.139018,((8:0.058393,9:0.054939,10:0.057665,11:0.057138,12:0.055682,13:0.054748,14:0.111853,15:0.056852,16:0.05703,17:0.056274,18:0.053831,19:0.056463,23:0.057254)0.84:0.16965,(31:0.056911,32:0.052789,33:0.056268,34:0.055478,35:0.055657,36:0.055257,37:0.055771,38:0.111941,((20:0.056551,21:0.056288,22:0.057286)0.83:0.205774,(24:0.114929,25:0.057469,26:0.114366,(27:0.054877,28:0.053148,29:0.055558,30:0.053966)0.92:0.111398)1.00:0.294638)0.96:0.279597)0.96:0.188414)1.00:0.488509)1.00:0.52243)1.00:0.2199375)[%setBetweenBits = 'string:selected' ] [%unrooted = on ]; END; BEGIN TREES; Title Lichtheimia_5.8s_ML; LINK Taxa = Taxa; TRANSLATE 1 Fennellomyces_linderi_FJ713096, 2 Fennellomyces_linderi_GQ249890, 3 Lichtheimia_brasiliensis_KC740488, 4 Lichtheimia_brasiliensis_KC740487, 5 Lichtheimia_brailiensis_KC740489, 6 Lichtheimia_brasiliensis_KC740486, 7 Dichotomocladium_elegans_HM999950, 8 Lichtheimia_ramosa_HQ285654, 9 Lichtheimia_ramosa_FJ719405, 10 Lichtheimia_ramosa_JF796106, 11 Lichtheimia_ramosa_EU852634, 12 Lichtheimia_ramosa_EU409804, 13 Lichtheimia_ramosa_EU409801, 14 Lichtheimia_ramosa_HQ285674, 15 Lichtheimia_ramosa__HQ647301, 16 Lichtheimia_ramosa_HQ285700, 17 Lichtheimia_ramosa_FJ719406, 18 Lichtheimia_ramosa_GQ342875, 19 Lichtheimia_ramosa_GQ342874, 20 Lichtheimia_sphaerocystis_GQ342899, 21 Lichtheimia_sphaerocystis_GQ342901, 22 Lichtheimia_sphaerocystis_GQ342900, 23 Lichtheimia_ramosa_EU852633, 24 Lichtheimia_hyalospora_AY944894, 25 Lichtheimia_hyalospora_AY944893, 26 Lichtheimia_hyalospora_GQ342898, 27 Lichtheimia_hyalospora_AY944892, 28 Lichtheimia_hyalospora_EF030530, 29 Lichtheimia_hyalospora_GQ342894, 30 Lichtheimia_hyalospora_GQ342895, 31 Lichtheimia_corymbifera_GQ342888, 32 Lichtheimia_corymbifera_HM104200, 33 Lichtheimia_corymbifera_HM104221, 34 Lichtheimia_corymbifera_GQ342878, 35 Lichtheimia_corymbifera_GQ342889, 36 Lichtheimia_ornata_GQ342892, 37 Lichtheimia_ornata_GQ342890, 38 Lichtheimia_ornata_GQ342891; TREE 'PHYLIP 1+' = ((1:0.0,2:0.0):0.023498,(7:0.077985,((3:0.005821,(5:0.005821,(4:0.0,6:0.0):0.0):0.0)792:0.007125,(((17:0.0,(18:0.0,19:0.0):0.0):0.0,(16:0.0,(15:0.0,(23:0.0,(12:0.0,(11:0.0,(10:0.0,(13:0.0,(9:0.0,(8:0.0,14:0.005803):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0)903:0.011718,((35:0.0,(34:0.0,(33:0.0,(32:0.0,(31:0.0,(38:0.005879,(36:0.0,37:0.0):0.0):0.0):0.0):0.0):0.0):0.0):1.0E-6,((22:0.0,(20:0.0,21:0.0):0.0)994:0.015371,((25:0.0,(24:0.005923,26:0.005922):0.0):0.0,(30:0.0,(29:0.0,(27:0.0,28:0.0):0.0):0.0)652:0.005923)933:0.024264)850:0.02269)827:0.012393)968:0.045334)978:0.055327)1000:0.023498)[%setBetweenBits = 'string:selected' ] [%unrooted = on ]; END; BEGIN TREES; Title Lichtheimia_5.8s_MP; LINK Taxa = Taxa; TRANSLATE 1 Fennellomyces_linderi_FJ713096, 2 Fennellomyces_linderi_GQ249890, 3 Lichtheimia_brasiliensis_KC740488, 4 Lichtheimia_brasiliensis_KC740487, 5 Lichtheimia_brailiensis_KC740489, 6 Lichtheimia_brasiliensis_KC740486, 7 Dichotomocladium_elegans_HM999950, 8 Lichtheimia_ramosa_HQ285654, 9 Lichtheimia_ramosa_FJ719405, 10 Lichtheimia_ramosa_JF796106, 11 Lichtheimia_ramosa_EU852634, 12 Lichtheimia_ramosa_EU409804, 13 Lichtheimia_ramosa_EU409801, 14 Lichtheimia_ramosa_HQ285674, 15 Lichtheimia_ramosa__HQ647301, 16 Lichtheimia_ramosa_HQ285700, 17 Lichtheimia_ramosa_FJ719406, 18 Lichtheimia_ramosa_GQ342875, 19 Lichtheimia_ramosa_GQ342874, 20 Lichtheimia_sphaerocystis_GQ342899, 21 Lichtheimia_sphaerocystis_GQ342901, 22 Lichtheimia_sphaerocystis_GQ342900, 23 Lichtheimia_ramosa_EU852633, 24 Lichtheimia_hyalospora_AY944894, 25 Lichtheimia_hyalospora_AY944893, 26 Lichtheimia_hyalospora_GQ342898, 27 Lichtheimia_hyalospora_AY944892, 28 Lichtheimia_hyalospora_EF030530, 29 Lichtheimia_hyalospora_GQ342894, 30 Lichtheimia_hyalospora_GQ342895, 31 Lichtheimia_corymbifera_GQ342888, 32 Lichtheimia_corymbifera_HM104200, 33 Lichtheimia_corymbifera_HM104221, 34 Lichtheimia_corymbifera_GQ342878, 35 Lichtheimia_corymbifera_GQ342889, 36 Lichtheimia_ornata_GQ342892, 37 Lichtheimia_ornata_GQ342890, 38 Lichtheimia_ornata_GQ342891; TREE PAUP_1 = ((1:100.0,2:100.0)0:49.8050005,(7:100.0,((3:100.0,4:100.0,5:100.0,6:100.0)77.335403:77.335403,((8:100.0,9:100.0,10:100.0,11:100.0,12:100.0,13:100.0,14:100.0,15:100.0,16:100.0,17:100.0,18:100.0,19:100.0,23:100.0)86.163109:86.163109,(31:100.0,32:100.0,33:100.0,34:100.0,35:100.0,36:100.0,37:100.0,38:100.0,((20:100.0,21:100.0,22:100.0)67.811897:67.811897,(24:100.0,25:100.0,26:100.0,(27:100.0,28:100.0,29:100.0,30:100.0)56.919716:56.919716)84.538986:84.538986)71.888092:71.888092)64.998421:64.998421)94.308319:94.308319)95.538559:95.538559)99.610001:49.8050005); END; BEGIN TREES; Title Lichtheimia_5.8s_NJ; LINK Taxa = Taxa; TRANSLATE 1 Fennellomyces_linderi_FJ713096, 2 Fennellomyces_linderi_GQ249890, 3 Lichtheimia_brasiliensis_KC740488, 4 Lichtheimia_brasiliensis_KC740487, 5 Lichtheimia_brailiensis_KC740489, 6 Lichtheimia_brasiliensis_KC740486, 7 Dichotomocladium_elegans_HM999950, 8 Lichtheimia_ramosa_HQ285654, 9 Lichtheimia_ramosa_FJ719405, 10 Lichtheimia_ramosa_JF796106, 11 Lichtheimia_ramosa_EU852634, 12 Lichtheimia_ramosa_EU409804, 13 Lichtheimia_ramosa_EU409801, 14 Lichtheimia_ramosa_HQ285674, 15 Lichtheimia_ramosa__HQ647301, 16 Lichtheimia_ramosa_HQ285700, 17 Lichtheimia_ramosa_FJ719406, 18 Lichtheimia_ramosa_GQ342875, 19 Lichtheimia_ramosa_GQ342874, 20 Lichtheimia_sphaerocystis_GQ342899, 21 Lichtheimia_sphaerocystis_GQ342901, 22 Lichtheimia_sphaerocystis_GQ342900, 23 Lichtheimia_ramosa_EU852633, 24 Lichtheimia_hyalospora_AY944894, 25 Lichtheimia_hyalospora_AY944893, 26 Lichtheimia_hyalospora_GQ342898, 27 Lichtheimia_hyalospora_AY944892, 28 Lichtheimia_hyalospora_EF030530, 29 Lichtheimia_hyalospora_GQ342894, 30 Lichtheimia_hyalospora_GQ342895, 31 Lichtheimia_corymbifera_GQ342888, 32 Lichtheimia_corymbifera_HM104200, 33 Lichtheimia_corymbifera_HM104221, 34 Lichtheimia_corymbifera_GQ342878, 35 Lichtheimia_corymbifera_GQ342889, 36 Lichtheimia_ornata_GQ342892, 37 Lichtheimia_ornata_GQ342890, 38 Lichtheimia_ornata_GQ342891; TREE PAUP_1 = ((1:100.0,2:100.0)0:45.8499985,(7:100.0,(3:100.0,4:100.0,5:100.0,6:100.0,((8:100.0,9:100.0,10:100.0,11:100.0,12:100.0,13:100.0,14:100.0,15:100.0,16:100.0,17:100.0,18:100.0,19:100.0,23:100.0)82.599998:82.599998,(31:100.0,32:100.0,33:100.0,34:100.0,35:100.0,36:100.0,37:100.0,38:100.0,((20:100.0,21:100.0,22:100.0)99.300003:99.300003,(24:100.0,25:100.0,26:100.0,(27:100.0,28:100.0,29:100.0,30:100.0)62.700001:62.700001)87.199997:87.199997)86.800003:86.800003)71.900002:71.900002)95.099998:95.099998)98.800003:98.800003)91.699997:45.8499985); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1366148298548; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4482349871378747055; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3372015967568356678; mqVersion 275; checksumv 0 3 2760304549 null getNumChars 173 numChars 173 getNumTaxa 38 numTaxa 38 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 151920.0 sumSquares 4.6116860184274278E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 286; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 566; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3372015967568356678 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 223; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;