#NEXUS [written Tue Dec 16 02:33:11 EST 2014 by Mesquite version 3.01 (build 658) at Macintosh-88.local/192.168.1.102] BEGIN TAXA; TITLE Untitled_Block_of_Taxa; DIMENSIONS NTAX=16; TAXLABELS Minutisphaera_fimbriatispora_G155_1_JX474874 Minutisphaera_fimbriatispora_G155_1_JX474873 Minutisphaera_fimbriatispora_JX474872 Minutisphaera_fimbriatispora_JX474871 'Minutisphaera sp. G156-2 JX474877' 'Minutisphaera sp. G156-2 JX474876' 'Minutisphaera parafibmriatispora G156-1a JX474875 type' Minutisphaera_parafimbriatispora_G156_4b Minutisphaera_parafimbriatispora_G156_4a Minutisphaera_japonica_AB733435 Minutisphaera_japonica_NR_119419.1 Minutisphaera_japonica_AB733436 Minutisphaera_aspera_G427_1a_Type Minutisphaera_aspera_G427_1b_ITS Didymosphaeria_sp._TS_04_050_HQ713763 Pleosporales_sp._39g_X244063 ; END; BEGIN TREES; Title 'Trees from "ITS_data"'; LINK Taxa = Untitled_Block_of_Taxa; TRANSLATE [0] 1 Minutisphaera_fimbriatispora_G155_1_JX474874, [1] 2 Minutisphaera_fimbriatispora_G155_1_JX474873, [2] 3 Minutisphaera_fimbriatispora_JX474872, [3] 4 Minutisphaera_fimbriatispora_JX474871, [4] 5 'Minutisphaera sp. G156-2 JX474877', [5] 6 'Minutisphaera sp. G156-2 JX474876', [6] 7 'Minutisphaera parafibmriatispora G156-1a JX474875 type', [7] 8 Minutisphaera_parafimbriatispora_G156_4b, [8] 9 Minutisphaera_parafimbriatispora_G156_4a, [9] 10 Minutisphaera_japonica_AB733435, [10] 11 Minutisphaera_japonica_NR_119419.1, [11] 12 Minutisphaera_japonica_AB733436, [12] 13 Minutisphaera_aspera_G427_1a_Type, [13] 14 Minutisphaera_aspera_G427_1b_ITS, [14] 15 Didymosphaeria_sp._TS_04_050_HQ713763, [15] 16 Pleosporales_sp._39g_X244063; TREE Tree_1 = (((1,2),(3,4)),(5,6),((7,(8,9)),((10,(11,12)),((13,14),(15,16))))); END; BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=16; TAXLABELS Minutisphaera_japonica_AB733435 Minutisphaera_japonica_NR_119419.1 Minutisphaera_japonica_AB733436 Didymosphaeria_sp._TS_04_050_HQ713763 Pleosporales_sp._39g_X244063 'Minutisphaera_parafibmriatispora_G156-1a_JX474875_type' Minutisphaera_fimbriatispora_JX474872 Minutisphaera_fimbriatispora_JX474871 'Minutisphaera_sp._G156-2_JX474877' 'Minutisphaera_sp._G156-2_JX474876' Minutisphaera_fimbriatispora_G155_1_JX474874 Minutisphaera_fimbriatispora_G155_1_JX474873 Minutisphaera_aspera_G427_1a_Type Minutisphaera_aspera_G427_1b_ITS Minutisphaera_parafimbriatispora_G156_4a Minutisphaera_parafimbriatispora_G156_4b ; END; BEGIN CHARACTERS; TITLE Character_Matrix; LINK TAXA = Taxa; DIMENSIONS NCHAR=599; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Minutisphaera_japonica_AB733435 GAAGGATCATTAAAAG---TTTGTTCGAGGCGGTCCCAGGCACTGCCAGGTGGCCGCTTAGACATCAACACCCTCTGTATATCTACCGCGTTGCTTTGGTGGGACGGCAGCCAGCAGCCCTGCTGGGAAGCTGTCCGCAGGGCCTCTTAAGGCCCCGCGAGCGCCTGCCAGAGAACCGTTAAACTCATGTTAAACCGTGATGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTCTGTCTCCACGTGGGCGGGCCTTAAAGTCATCAGCGGCTGAGAGAACGGCGTTCTAGCGTAGTAGAAATTAACTCGCTGGGGACCGGCCTCAGGTAGCTGTCAAATCCGCGCCTTT-GCGCACATCTT-AGGTTGACCTCGG--------------------------------------------- Minutisphaera_japonica_NR_119419.1 GAAGGATCATTAAAAG---TTTGTTCGAGGCGGTCCCAGGCACTGCCAGGTGGCCGCTTAGACATCAACACCCTCTGTATATCTACCGCGTTGCTTTGGTGGGACGGCAGCCAGCAGCCCTGCTGGGAAGCTGTCCGCAGGGCCTCTTAAGGCCCCGCGAGCGCCTGCCAGAGAACCTTTAAACTCATGTTAAACCGTGATGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTCTGTCTCCACGTGGGCGGGCCTTAAAGTCATCAGCGGCTGAGAGAACGGCGTTCTAGCGTAGTAGAAATTAACTCGCTGGGGACCGGCCTCAGGTAGCTGTCAAATCCGCGCCTTT-GCGCACATCTT-AGGTTGACCTCGG--------------------------------------------- Minutisphaera_japonica_AB733436 GAAGGATCATTAAAAG---TTTGTTCGAGGCGGTCCCAGGCACTGCCAGGTGGCCGCTTAGACATCAACACCCTCTGTATATCTACCGCGTTGCTTTGGTGGGACGGCAGCCAGCAGCCCTGCTGGGAAGCTGTCCGCAGGGCCTCTTAAGGCCCCGCGAGCGCCTGCCAGAGAACCTTTAAACTCATGTTAAACCGTGATGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTCTGTCTCCACGTGGGCGGGCCTTAAAGTCATCAGCGGCTGAGAGAACGGCGTTCTAGCGTAGTAGAAATTAACTCGCTGGGGACCGGCCTCAGGTAGCTGTCAAATCCGCGCCTTT-GCGCACATCTT-AGGTTGACCTCGG--------------------------------------------- Didymosphaeria_sp._TS_04_050_HQ713763 -------CATTAAAAG----TTGTTCGAGGCGGCCCCAGGCATCGCCAGGTGGCCGCTTAGACGTCAACACCCTCTGTATATCTACCGCGTTGCTTTGGCGGGACGGCAGCCAGCAGCCCTGCTGGGAAGCTGTCCGCAGGGCCTCTCAAGGCCCCGCGAGCGCCCGCCAGAGAACCGTCAAACTCGTGTTAAACCGTGGTGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTCTGTCCCCACGCGGGCGGGCCTCAAAGTCATCAGCGGCTGAGAGAACGGCGTTCTAGCGTAGTAGAAATTAACTCGCCAGGGACCGGCCTCAGGCAGCTGTCAAACCCGCGCCTTT-GCGCAC-TCTT-AGGTTGACCTCGGAT------------------------------------------- Pleosporales_sp._39g_X244063 ------------------AGTTGTTCGAGGCGGCCCCAGGCATCGCCAGGTGGCCGCTTAGACGTCAACACCCTCTGTATATCTACCGCGTTGCTTTGGCGGGACGGCAGCCAGCAGCCCTGCTGGGAAGCTGTCCGCAGGGCCTCTCAAGGCCCCGCGAGCGCCCGCCAGAGAACCGTCAAACTCGTGTTAAACCGTGGTGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTCTGTCCCCACGCGGGCGGGCCTCAAAGTCATCAGCGGCTGAGAGAACGGCGTTCTAGCGTAGTAGAAATTAACTCGCCAGGGACCGGCCTCAGGCAGCTGTCAAACCCGCGCCTTT-GCGCACATCTT-AGGTTGACCTCGGATAAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGA 'Minutisphaera_parafibmriatispora_G156-1a_JX474875_type' GAAGGATCATTAAAAAAAAGTTGTGCGAGGCGGCCCCAGGCACTGCCAGGTGGCCGCTTAGACATCAACACCCTCTGTATATCTACCGCGTTGCTTTGGCGGGACGGCAGCCATCAGCTCCGCTGGGAAGCTGTCCGCAGGGCCTCTTAAAGCCCCGCGAGTGCCCGCCAGAGAACCACCAAACACATGTTAAACCGTGATGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTCCGCCTCCATGTGGGCGGGCCTCAAAGTTATCAGCGGCTGAGCGAACGGTATTCCAGCGTAGTAGAAATTAACTCGCTGGGGACCGGCCTCAGGTAGCTGTCGAACACACGCCTTTGGCGTATATTTTAAGGTTGACCTCGGATAAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGA Minutisphaera_fimbriatispora_JX474872 GAAGGATCATTAAAAAAAAGTTGTGTGAGGCGGTACCTGGCAGTGCCAGGTGGCCGCTTATACATCAACACCCTCTGTATATCTACCGTGTTGCTTTGGCGGGACGGCAACCATCAGCTCCGCTGGGAAGTTGTCCGCAGGGCCTGTAAAGGCCCCGCGAGCGCCCGCCGGAGAACCACCAAACTCATGTTAAACCGTGATGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTCTGCCCCCCTGTGGGCGGGCCTTAAAGTCATCAGCGGCTGAGCAAACGGCACTCTAGCGTAGTAGAAATTAACTCGCTGGGGACGGGGCTCAGGCAGCTGTTAAACACGCGTCTCTGGCGCACATCTTAAGGTTGACCTCGGATAAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGA Minutisphaera_fimbriatispora_JX474871 -AAGGATCATTAAAAAAAAGTTGTGTGAGGCGGTACCTGGCAGTGCCAGGTGGCCGCTTATACATCAACACCCTCTGTATATCTACCGTGTTGCTTTGGCGGGACGGCAACCATCAGCTCCGCTGGGAAGTTGTCCGCAGGGCCTGTAAAGGCCCCGCGAGCGCCCGCCGGAGAACCACCAAACTCATGTTAAACCGTGATGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTCTGCCCCCCTGTGGGCGGGCCTTAAAGTCATCAGCGGCTGAGCAAACGGCACTCTAGCGTAGTAGAAATTAACTCGCTGGGGACGGGGCTCAGGCAGCTGTTAAACACGCGTCTCTGGCGCACATCTTAAGGTTGACCTCGGATAAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGA 'Minutisphaera_sp._G156-2_JX474877' GAAGGATCATTAAAAAAACGTTGTGTGAGGCGGCCCCGGGCAATGCCAGTTGGCCGCTTAGACATCAACACCCTCTGTATATCTACCGTGTTGCTTTGGCGGGACGACAACCATCAGCTCCGCTGGGAAGTTGTCCGCAGGGCCTGTTAATGCCCCGCGAGCGCCCGCCAGAGAACCACCAAACACATGTTAAACCGTGATGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTTCGTCCCTGTGTGGGCGGGCCTCAAAGTCATCAGCGGCTGAGTAAACGGCACTCTAGCGTAGTAGAAATTAACTCGCTGGGGACCGGACTTAGGCAGCTGTTAAACACGCGCCTCTGGCGCATATCTTCAGGTTGACCTCGGATAAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT------- 'Minutisphaera_sp._G156-2_JX474876' GAAGGATCATTAAAAAAACGTTGTGTGAGGCGGCCCCGGGCAATGCCAGTTGGCCGCTTAGACATCAACACCCTCTGTATATCTACCGTGTTGCTTTGGCGGGACGACAACCATCAGCTCCGCTGGGAAGTTGTCCGCAGGGCCTGTTAATGCCCCGCGAGCGCCCGCCAGAGAACCACCAAACACATGTTAAACCGTGATGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTTCGTCCCTGTGTGGGCGGGCCTCAAAGTCATCAGCGGCTGAGTAAACGGCACTCTAGCGTAGTAGAAATTAACTCGCTGGGGACCGGACTTAGGCAGCTGTTAAACACGCGCCTCTGGCGCATATCTTCAGGTTGACCTCGGATAAGGTAGGGATACCCGCTGAACTTAAGCATATCA--------- Minutisphaera_fimbriatispora_G155_1_JX474874 GRAGGATCATTAAAAAAAAGTTGTGTGAGGCGGTGCCTGGCAGTGCCAGGTAGCCGCTTATACATCAACACCCTCTGTATATCTACCGTGTTGCTTTGGCGGGACGGCAACC----------------AGTTGTCCGCAGGACCTGTTAAGGCCCCGCGAGTGCCCGCCGGAGAACCACCAAACTCATGTTAAACCGTGATGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTCCGCCCCC-TGTGGGCGGGCCTTAAAGTCATCAGCGGCTGAGCAAACGGCACTCTAGCGTAGTAGAAATTAACTCGCTGGGGACGGGGCTTGGGTAGCTGTTAAACACGCGTCTCTGGCGCACATCTTAAGGTTGACCTCGGATAAGGTAGRGATACCCGCTGAACTTAAGCATATCAATAAGCGGA Minutisphaera_fimbriatispora_G155_1_JX474873 GAAGGATCATTAAAAAAAAGTTGTGTGAGGCGGTGCCTGGCAGACCCATGTAGCCGCTTATACATCAACACCCTCTGTATATCTACCGTGTTGCTTTGGCGGGACGGCAACC----------------AGTTGTCCGCAGGACCTGTTAAGGCCCCGCGAGTGCCCGCCGGAGAACCACCAAACTCATGTTAAACCGTGATGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTCCGCCCCC-TGTGGGCGGGCCTTAAAGTCATCAGCGGCTGAGCAAACGGCACTCTAGCGTAGTAGAAATTAACTCGCTGGGGACGGGGCTTGGGTAGCTGTTAAACACGCGTCTCTGGCGCACATCTTAAGGTTGACCTCGGATAAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGA Minutisphaera_aspera_G427_1a_Type GAAGGATCATTAAAAG----TTGCTCGAGGCGGCCCCAGGCATCGCCAGGTGGCCGCTTAGACATCAACACCCTCTGTATATCTACCGCGTTGCTTTGGCGGGACGGCAGCCAGCAGCCCTGCTGGGAAGCTGTCCGTAGGGCCTCTCAAGGCCCCGCGAGCGCCCGCCAGAGAACCGTCAAACTCATGTTAAACCGTGGTGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCTTCCGTCCCCACGCGGGCGGGCCTCAAAGTCATCAGCGGCTGAGAGAACGGCGTTCTAGCGTAGTAGAAATTAACTCGCCAGGGACCGGCCTCAGGCAGCTGTCAAACCCGCGCCTTT-GCGCACATCTT-AGGTTGACCTCGGATAAGGTAGGGA--------------------------------- Minutisphaera_aspera_G427_1b_ITS -------CATTAAAAG----TTGCTCGAGGCGGCCCCAGGCATCGCCAGGTGGCCGCTTAGACATCAACACCCTCTGTATATCTACCGCGTTGCTTTGGCGGGACGGCAGCCAGCAGCCCTGCTGGGAAGCTGTCCGTAGGGCCTCTCAAGGCCCCGCGAGCGCCCGCCAGAGAACCGTCAAACTCATGTTAAACCGTGGTGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCTTCCGTCCCCACGCGGGCGGGCCTCAAAGTCATCAGCGGCTGAGAGAACGGCGTTCTAGCGTAGTAGAAATTAACTCGCCAGGGACCGGCCTCAGGCAGCTGTCAAACCCGCGCCTTT-GCGCACATCTT-AGGTTGACCTCGGATAAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGA Minutisphaera_parafimbriatispora_G156_4a -------CATTAAAAAAAAGTTGTGCGAGGCGGCCCCAGGCACTGCCAGGTGGCCGCTTAGACATCAACACCCTCTGTATATCTACCGCGTTGCTTTGGCGGGACGGCAGCCATCAGCTCCGCTGGGAAGCTGTCCGCAGGGCCTCTTAAAGCCCCGCGAGTGCCCGCCAGAGAACCACCAAACACATGTTAAACCGTGATGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTCCGCCTCCATGTGGGCGGGCCTCAAAGTTATCAGCGGCTGAGCGAACGGTATTCCAGCGTAGTAGAAATTAACTCGCTGGGGACCGGCCTCAGGTAGCTGTCGAACACACGCCTTTGGCGTATATTTTAAGGTTGACCTCGGATAAGGTAGGG---------------------------------- Minutisphaera_parafimbriatispora_G156_4b -------CATTAAAAAAAAGTTGTGCGAGGCGGCCCCAGGCACTGCCAGGTGGCCGCTTAGACATCAACACCCTCTGTATATCTACCGCGTTGCTTTGGCGGGACGGCAGCCATCAGCTCCGCTGGGAAGCTGTCCGCAGGGCCTCTTAAAGCCCCGCGAGTGCCCGCCAGAGAACCACCAAACACATGTTAAACCGTGATGTCTGAGCTTTACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTTTTCGAGCGTCATTACAACCGTCAAGCTCTGCTTGGTATTGGGCCTCCGCCTCCATGTGGGCGGGCCTCAAAGTTATCAGCGGCTGAGCGAACGGTATTCCAGCGTAGTAGAAATTAACTCGCTGGGGACCGGCCTCAGGTAGCTGTCGAACACACGCCTTTGGCGTATATTTTAAGGTTGACCTCGGATAAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 599; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 599; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 599; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1418715191609; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4024591599704521808; setID 1 8209437240472272828; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3479651432417822997; mqVersion 301; checksumv 0 3 2035238076 null getNumChars 599 numChars 599 getNumTaxa 16 numTaxa 16 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 189056.0 sumSquares 9.223372036854776E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4024591599704521808 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTaxa #4024591599704521808; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 880.1418714338520.5638318544928446089; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3479651432417822997 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 260; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;